From d2b737df77d4c620c05902a6dc893ee6f0b838d9 Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Thu, 7 Sep 2023 23:24:30 +0200
Subject: [PATCH] barrnap not installed in test image
---
test/test_install/test_make_all-installed.py | 20 ++++++++++----------
1 file changed, 10 insertions(+), 10 deletions(-)
diff --git a/test/test_install/test_make_all-installed.py b/test/test_install/test_make_all-installed.py
index ddf2920..6a854dc 100755
--- a/test/test_install/test_make_all-installed.py
+++ b/test/test_install/test_make_all-installed.py
@@ -92,7 +92,7 @@ def test_upgrade(install_panacota):
"""
Test upgrading PanACoTA when dependencies are still installed
"""
- assert utils.check_installed("barrnap")
+ # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
assert utils.check_installed("FastTreeMP")
assert utils.check_installed("PanACoTA")
@@ -100,7 +100,7 @@ def test_upgrade(install_panacota):
cmd = "python3 make upgrade"
error = "Error upgrade"
utils.run_cmd(cmd, error)
- assert utils.check_installed("barrnap")
+ # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
assert utils.check_installed("PanACoTA")
assert utils.check_installed("FastTreeMP")
@@ -121,14 +121,14 @@ def test_upgrade_notinstalled():
cmd = "python3 make uninstall"
error = "Error trying to uninstall PanACoTa"
utils.run_cmd(cmd, error)
- assert utils.check_installed("barrnap")
+ # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
assert utils.check_installed("FastTreeMP")
assert not utils.check_installed("PanACoTA")
cmd = "python3 make upgrade"
error = "Error upgrade"
utils.run_cmd(cmd, error)
- assert utils.check_installed("barrnap")
+ # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
assert utils.check_installed("PanACoTA")
assert utils.check_installed("FastTreeMP")
@@ -146,7 +146,7 @@ def test_uninstall(install_panacota):
"""
Test uninstalling PanACoTA when dependencies are still installed
"""
- assert utils.check_installed("barrnap")
+ # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
assert utils.check_installed("PanACoTA")
assert utils.check_installed("FastTreeMP")
@@ -154,7 +154,7 @@ def test_uninstall(install_panacota):
error = "Error uninstalling"
utils.run_cmd(cmd, error)
assert not utils.check_installed("PanACoTA")
- assert utils.check_installed("barrnap")
+ # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
assert utils.check_installed("mash")
assert utils.check_installed("FastTreeMP")
@@ -177,12 +177,12 @@ def test_develop():
error = "Error trying to uninstall PanACoTa"
utils.run_cmd(cmd, error)
assert not utils.check_installed("PanACoTA")
- assert utils.check_installed("barrnap")
+ # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
cmd = "python3 make develop"
error = "Error develop"
utils.run_cmd(cmd, error)
- assert utils.check_installed("barrnap")
+ # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
assert utils.check_installed("PanACoTA")
# Check installed in developper mode (egg-info file is present)
@@ -226,12 +226,12 @@ def test_install_user():
utils.run_cmd(cmd, error)
cmd = "python3 make --user"
error = "Error trying to install PanACoTA from base"
- assert utils.check_installed("barrnap")
+ # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
assert not utils.check_installed("PanACoTA")
assert utils.check_installed("FastTreeMP")
utils.run_cmd(cmd, error)
- assert utils.check_installed("barrnap")
+ # assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
assert utils.check_installed("PanACoTA")
assert utils.check_installed("FastTreeMP")
--
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