diff --git a/LICENCE-files/avis-licence.txt b/LICENCE-files/avis-licence.txt deleted file mode 100644 index 036f89a72936a30b0773c7db84044ebc95488714..0000000000000000000000000000000000000000 --- a/LICENCE-files/avis-licence.txt +++ /dev/null @@ -1,34 +0,0 @@ -#!/usr/bin/env python3 -# coding: utf-8 - -# ############################################################################### -# This file is part of PanACOTA. # -# # -# Authors: Amandine Perrin # -# Copyright © 2018-2020 Institut Pasteur (Paris). # -# See the COPYRIGHT file for details. # -# # -# PanACOTA is a software providing tools for large scale bacterial comparative # -# genomics. From a set of complete and/or draft genomes, you can: # -# - Do a quality control of your strains, to eliminate poor quality # -# genomes, which would not give any information for the comparative study # -# - Uniformly annotate all genomes # -# - Do a Pan-genome # -# - Do a Core or Persistent genome # -# - Align all Core/Persistent families # -# - Infer a phylogenetic tree from the Core/Persistent families # -# # -# PanACOTA is free software: you can redistribute it and/or modify it under the # -# terms of the Affero GNU General Public License as published by the Free # -# Software Foundation, either version 3 of the License, or (at your option) # -# any later version. # -# # -# PanACOTA is distributed in the hope that it will be useful, but WITHOUT ANY # -# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # -# FOR A PARTICULAR PURPOSE. See the Affero GNU General Public License # -# for more details. # -# # -# You should have received a copy of the Affero GNU General Public License # -# along with PanACOTA (COPYING file). # -# If not, see <https://www.gnu.org/licenses/>. # -# ############################################################################### \ No newline at end of file diff --git a/LICENCE-files/example-header.png b/LICENCE-files/example-header.png deleted file mode 100644 index afd06818b0de38bb79b1d4171a3c402c10467514..0000000000000000000000000000000000000000 Binary files a/LICENCE-files/example-header.png and /dev/null differ diff --git a/LICENCE-files/example-header.txt.md b/LICENCE-files/example-header.txt.md deleted file mode 100644 index 695ffd561eebc19a64634d72e13c7dd70e72b4b8..0000000000000000000000000000000000000000 --- a/LICENCE-files/example-header.txt.md +++ /dev/null @@ -1,18 +0,0 @@ -$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$ -$ $ -$ up so discovery my middleton eagerness dejection explained. 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Suspicion neglected he resolving agreement perceived an. $ -$ $ -$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$ \ No newline at end of file diff --git a/LICENCE-files/list-source-files.txt b/LICENCE-files/list-source-files.txt deleted file mode 100644 index 42bbfb8e4f66d1bb5496cc67b8620dc97f3364cb..0000000000000000000000000000000000000000 --- a/LICENCE-files/list-source-files.txt +++ /dev/null @@ -1,28 +0,0 @@ -genomeAPCAT/__init__.py -genomeAPCAT/utils.py -genomeAPCAT/utils_pangenome.py -genomeAPCAT/align_module/__init__.py -genomeAPCAT/align_module/alignment.py -genomeAPCAT/align_module/get_seqs.py -genomeAPCAT/align_module/pan_to_pergenome.py -genomeAPCAT/align_module/post_align.py -genomeAPCAT/annote_module/__init__.py -genomeAPCAT/annote_module/format_functions.py -genomeAPCAT/annote_module/genome_seq_functions.py -genomeAPCAT/annote_module/prokka_functions.py -genomeAPCAT/corepers_module/__init__.py -genomeAPCAT/corepers_module/persistent_functions.py -genomeAPCAT/pangenome_module/__init__.py -genomeAPCAT/pangenome_module/mmseqs_functions.py -genomeAPCAT/pangenome_module/post_treatment.py -genomeAPCAT/pangenome_module/protein_seq_functions.py -genomeAPCAT/subcommands/__init__.py -genomeAPCAT/subcommands/align.py -genomeAPCAT/subcommands/annote.py -genomeAPCAT/subcommands/corepers.py -genomeAPCAT/subcommands/pangenome.py -genomeAPCAT/subcommands/tree.py -genomeAPCAT/tree_module/__init__.py -genomeAPCAT/tree_module/fastme_func.py -genomeAPCAT/tree_module/fasttree_func.py -genomeAPCAT/tree_module/quicktree_func.py