From de2ddde0d6eb5ef3e752291f5f054a0b11f9a506 Mon Sep 17 00:00:00 2001 From: asetGem <amandine.perrin@pasteur.fr> Date: Mon, 9 Nov 2020 15:44:00 +0100 Subject: [PATCH] adapt functional tests to new default iqtree --- test/test_functional/test_tree.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/test/test_functional/test_tree.py b/test/test_functional/test_tree.py index df0b9867..f9353792 100755 --- a/test/test_functional/test_tree.py +++ b/test/test_functional/test_tree.py @@ -277,7 +277,7 @@ def test_main_iqtree2_newdir(capsys): "-T 1 -m GTR -B 1000 --boot-trees --seqtype DNA " "--prefix test/data/tree/generated_by_func_tests/" "test_iqtree2/exp_pers4genomes.grp.aln.iqtree_tree " - "-quiet") in " ".join(iq_lines) + "--quiet") in " ".join(iq_lines) assert ("Alignment has 4 sequences with 6438 columns, " "81 distinct patterns") in " ".join(iq_lines) assert "Analysis results written to:" in " ".join(iq_lines) @@ -303,7 +303,7 @@ def test_main_iqtree2_newdir(capsys): assert ("IQtree command: iqtree2 -s test/data/align/exp_files/exp_pers4genomes.grp.aln " "-T 1 -m GTR -B 1000 --boot-trees --seqtype DNA --prefix test/data/tree/" "generated_by_func_tests/test_iqtree2/exp_pers4genomes.grp.aln.iqtree_tree " - "-quiet") in out + "--quiet") in out assert "END" in out -- GitLab