From e1a53c00f2a38a9d573748559e26c558009b7450 Mon Sep 17 00:00:00 2001 From: Amandine PERRIN <amandine.perrin@pasteur.fr> Date: Thu, 5 Dec 2019 10:06:09 +0100 Subject: [PATCH] annotate is step 2. step 1 is prepare --- .../Genes/EXAM.1216.00002.gen | 0 .../Genes/EXAM.1219.00001.gen | 0 .../Genes/GEN2.1219.00001.gen | 0 .../Genes/GEN4.1111.00001.gen | 0 .../LSTINFO-list_genomes.lst | 0 .../LSTINFO/EXAM.1216.00002.lst | 0 .../LSTINFO/EXAM.1219.00001.lst | 0 .../LSTINFO/GEN2.1219.00001.lst | 0 .../LSTINFO/GEN4.1111.00001.lst | 0 .../PanACoTA-annotate_list_genomes.log | 0 .../PanACoTA-annotate_list_genomes.log.details | 0 .../PanACoTA-annotate_list_genomes.log.err | 0 .../Proteins/EXAM.1216.00002.prt | 0 .../Proteins/EXAM.1219.00001.prt | 0 .../Proteins/GEN2.1219.00001.prt | 0 .../Proteins/GEN4.1111.00001.prt | 0 .../QC_L90-list_genomes.png | Bin .../QC_nb-contigs-list_genomes.png | Bin .../Replicons/EXAM.1216.00002.fna | 0 .../Replicons/EXAM.1219.00001.fna | 0 .../Replicons/GEN2.1219.00001.fna | 0 .../Replicons/GEN4.1111.00001.fna | 0 .../discarded-list_genomes.lst | 0 .../gff3/EXAM.1216.00002.gff | 0 .../gff3/EXAM.1219.00001.gff | 0 .../gff3/GEN2.1219.00001.gff | 0 .../gff3/GEN4.1111.00001.gff | 0 .../tmp_files/genome1.fst_prodigal-split5N.fna | 0 .../genome1.fst_prodigal-split5N.fna-prodigal.log | 0 ...enome1.fst_prodigal-split5N.fna-prodigal.log.err | 0 .../EXAM.1219.00001.faa | 0 .../EXAM.1219.00001.ffn | 0 .../EXAM.1219.00001.gff | 0 .../tmp_files/genome2.fst_prodigal-split5N.fna | 0 .../genome2.fst_prodigal-split5N.fna-prodigal.log | 0 ...enome2.fst_prodigal-split5N.fna-prodigal.log.err | 0 .../GEN2.1219.00001.faa | 0 .../GEN2.1219.00001.ffn | 0 .../GEN2.1219.00001.gff | 0 .../tmp_files/genome3-chromo.fst-all.fna | 0 .../genome3-chromo.fst-all.fna_prodigal-split5N.fna | 0 ...mo.fst-all.fna_prodigal-split5N.fna-prodigal.log | 0 ...st-all.fna_prodigal-split5N.fna-prodigal.log.err | 0 .../EXAM.1216.00002.faa | 0 .../EXAM.1216.00002.ffn | 0 .../EXAM.1216.00002.gff | 0 .../tmp_files/genome4.fst_prodigal-split5N.fna | 0 .../genome4.fst_prodigal-split5N.fna-prodigal.log | 0 ...enome4.fst_prodigal-split5N.fna-prodigal.log.err | 0 .../GEN4.1111.00001.faa | 0 .../GEN4.1111.00001.ffn | 0 .../GEN4.1111.00001.gff | 0 52 files changed, 0 insertions(+), 0 deletions(-) rename Examples/{1-res-Annotate-prodigal => 2-res-Annotate-prodigal}/Genes/EXAM.1216.00002.gen (100%) rename Examples/{1-res-Annotate-prodigal => 2-res-Annotate-prodigal}/Genes/EXAM.1219.00001.gen (100%) rename Examples/{1-res-Annotate-prodigal => 2-res-Annotate-prodigal}/Genes/GEN2.1219.00001.gen (100%) rename Examples/{1-res-Annotate-prodigal => 2-res-Annotate-prodigal}/Genes/GEN4.1111.00001.gen (100%) rename Examples/{1-res-Annotate-prodigal => 2-res-Annotate-prodigal}/LSTINFO-list_genomes.lst (100%) rename Examples/{1-res-Annotate-prodigal => 2-res-Annotate-prodigal}/LSTINFO/EXAM.1216.00002.lst (100%) rename Examples/{1-res-Annotate-prodigal => 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Examples/2-res-Annotate-prodigal/tmp_files/genome1.fst_prodigal-split5N.fna-prodigalRes/EXAM.1219.00001.gff diff --git a/Examples/1-res-Annotate-prodigal/tmp_files/genome2.fst_prodigal-split5N.fna b/Examples/2-res-Annotate-prodigal/tmp_files/genome2.fst_prodigal-split5N.fna similarity index 100% rename from Examples/1-res-Annotate-prodigal/tmp_files/genome2.fst_prodigal-split5N.fna rename to Examples/2-res-Annotate-prodigal/tmp_files/genome2.fst_prodigal-split5N.fna diff --git a/Examples/1-res-Annotate-prodigal/tmp_files/genome2.fst_prodigal-split5N.fna-prodigal.log b/Examples/2-res-Annotate-prodigal/tmp_files/genome2.fst_prodigal-split5N.fna-prodigal.log similarity index 100% rename from Examples/1-res-Annotate-prodigal/tmp_files/genome2.fst_prodigal-split5N.fna-prodigal.log rename to Examples/2-res-Annotate-prodigal/tmp_files/genome2.fst_prodigal-split5N.fna-prodigal.log diff --git a/Examples/1-res-Annotate-prodigal/tmp_files/genome2.fst_prodigal-split5N.fna-prodigal.log.err 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b/Examples/2-res-Annotate-prodigal/tmp_files/genome2.fst_prodigal-split5N.fna-prodigalRes/GEN2.1219.00001.ffn similarity index 100% rename from Examples/1-res-Annotate-prodigal/tmp_files/genome2.fst_prodigal-split5N.fna-prodigalRes/GEN2.1219.00001.ffn rename to Examples/2-res-Annotate-prodigal/tmp_files/genome2.fst_prodigal-split5N.fna-prodigalRes/GEN2.1219.00001.ffn diff --git a/Examples/1-res-Annotate-prodigal/tmp_files/genome2.fst_prodigal-split5N.fna-prodigalRes/GEN2.1219.00001.gff b/Examples/2-res-Annotate-prodigal/tmp_files/genome2.fst_prodigal-split5N.fna-prodigalRes/GEN2.1219.00001.gff similarity index 100% rename from Examples/1-res-Annotate-prodigal/tmp_files/genome2.fst_prodigal-split5N.fna-prodigalRes/GEN2.1219.00001.gff rename to Examples/2-res-Annotate-prodigal/tmp_files/genome2.fst_prodigal-split5N.fna-prodigalRes/GEN2.1219.00001.gff diff --git a/Examples/1-res-Annotate-prodigal/tmp_files/genome3-chromo.fst-all.fna b/Examples/2-res-Annotate-prodigal/tmp_files/genome3-chromo.fst-all.fna similarity index 100% rename from Examples/1-res-Annotate-prodigal/tmp_files/genome3-chromo.fst-all.fna rename to Examples/2-res-Annotate-prodigal/tmp_files/genome3-chromo.fst-all.fna diff --git a/Examples/1-res-Annotate-prodigal/tmp_files/genome3-chromo.fst-all.fna_prodigal-split5N.fna b/Examples/2-res-Annotate-prodigal/tmp_files/genome3-chromo.fst-all.fna_prodigal-split5N.fna similarity index 100% rename from Examples/1-res-Annotate-prodigal/tmp_files/genome3-chromo.fst-all.fna_prodigal-split5N.fna rename to Examples/2-res-Annotate-prodigal/tmp_files/genome3-chromo.fst-all.fna_prodigal-split5N.fna diff --git a/Examples/1-res-Annotate-prodigal/tmp_files/genome3-chromo.fst-all.fna_prodigal-split5N.fna-prodigal.log b/Examples/2-res-Annotate-prodigal/tmp_files/genome3-chromo.fst-all.fna_prodigal-split5N.fna-prodigal.log similarity index 100% rename from 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from Examples/1-res-Annotate-prodigal/tmp_files/genome3-chromo.fst-all.fna_prodigal-split5N.fna-prodigalRes/EXAM.1216.00002.faa rename to Examples/2-res-Annotate-prodigal/tmp_files/genome3-chromo.fst-all.fna_prodigal-split5N.fna-prodigalRes/EXAM.1216.00002.faa diff --git a/Examples/1-res-Annotate-prodigal/tmp_files/genome3-chromo.fst-all.fna_prodigal-split5N.fna-prodigalRes/EXAM.1216.00002.ffn b/Examples/2-res-Annotate-prodigal/tmp_files/genome3-chromo.fst-all.fna_prodigal-split5N.fna-prodigalRes/EXAM.1216.00002.ffn similarity index 100% rename from Examples/1-res-Annotate-prodigal/tmp_files/genome3-chromo.fst-all.fna_prodigal-split5N.fna-prodigalRes/EXAM.1216.00002.ffn rename to Examples/2-res-Annotate-prodigal/tmp_files/genome3-chromo.fst-all.fna_prodigal-split5N.fna-prodigalRes/EXAM.1216.00002.ffn diff --git a/Examples/1-res-Annotate-prodigal/tmp_files/genome3-chromo.fst-all.fna_prodigal-split5N.fna-prodigalRes/EXAM.1216.00002.gff 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rename to Examples/2-res-Annotate-prodigal/tmp_files/genome4.fst_prodigal-split5N.fna-prodigalRes/GEN4.1111.00001.faa diff --git a/Examples/1-res-Annotate-prodigal/tmp_files/genome4.fst_prodigal-split5N.fna-prodigalRes/GEN4.1111.00001.ffn b/Examples/2-res-Annotate-prodigal/tmp_files/genome4.fst_prodigal-split5N.fna-prodigalRes/GEN4.1111.00001.ffn similarity index 100% rename from Examples/1-res-Annotate-prodigal/tmp_files/genome4.fst_prodigal-split5N.fna-prodigalRes/GEN4.1111.00001.ffn rename to Examples/2-res-Annotate-prodigal/tmp_files/genome4.fst_prodigal-split5N.fna-prodigalRes/GEN4.1111.00001.ffn diff --git a/Examples/1-res-Annotate-prodigal/tmp_files/genome4.fst_prodigal-split5N.fna-prodigalRes/GEN4.1111.00001.gff b/Examples/2-res-Annotate-prodigal/tmp_files/genome4.fst_prodigal-split5N.fna-prodigalRes/GEN4.1111.00001.gff similarity index 100% rename from Examples/1-res-Annotate-prodigal/tmp_files/genome4.fst_prodigal-split5N.fna-prodigalRes/GEN4.1111.00001.gff rename to Examples/2-res-Annotate-prodigal/tmp_files/genome4.fst_prodigal-split5N.fna-prodigalRes/GEN4.1111.00001.gff -- GitLab