From e1f898b7c87e15cd9025d36fc3a6215fdd8ca2b4 Mon Sep 17 00:00:00 2001 From: Amandine PERRIN <amandine.perrin@pasteur.fr> Date: Thu, 3 Oct 2019 15:04:29 +0200 Subject: [PATCH] Add mash installation --- for_tests/Dockerfile | 11 ++++++++++- 1 file changed, 10 insertions(+), 1 deletion(-) diff --git a/for_tests/Dockerfile b/for_tests/Dockerfile index af92d370..93598740 100644 --- a/for_tests/Dockerfile +++ b/for_tests/Dockerfile @@ -1,4 +1,4 @@ -from ubuntu:latest +from ubuntu:18.04 # Update apt-get packages RUN apt-get update &&\ @@ -14,6 +14,15 @@ RUN apt-get install -y \ RUN pip3 install --upgrade pip +# Install mash +WORKDIR /tmp +RUN wget https://github.com/marbl/Mash/releases/download/v2.2/mash-Linux64-v2.2.tar &&\ + tar -xf mash-Linux64-v2.2.tar &&\ + rm mash-Linux64-v2.2.tar &&\ + mv /tmp/mash-Linux64-v2.2/mash /usr/local/bin &&\ + rm -r mash-Linux64-v2.2 + + # Install barrnap WORKDIR /tmp RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\ -- GitLab