From e7dfba08efd2dcc2ebcd7e1764b9d1926b9772fe Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Mon, 2 Jan 2023 18:46:22 +0100
Subject: [PATCH] indent error
---
test/test_unit/test_tree/test_fastme.py | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/test/test_unit/test_tree/test_fastme.py b/test/test_unit/test_tree/test_fastme.py
index 4069c132..b1fb1008 100755
--- a/test/test_unit/test_tree/test_fastme.py
+++ b/test/test_unit/test_tree/test_fastme.py
@@ -249,7 +249,8 @@ def test_run_tree(caplog):
threads = 1
model = 'T'
write_boot = False
- fme.run_tree(ALIGNMENT, boot, GENEPATH, quiet, threads, model=model, wb=write_boot)
+ write_matrix = False
+ fme.run_tree(ALIGNMENT, boot, GENEPATH, quiet, threads, model=model, wb=write_boot, matrix=write_matrix)
assert "Converting fasta alignment to PHYLIP-relaxed format" in caplog.text
assert "Running FastME..." in caplog.text
assert ("fastme "
@@ -274,7 +275,7 @@ def test_run_tree(caplog):
threads = 1
model = 'T'
write_boot = True
- fme.run_tree(ALIGNMENT, boot, GENEPATH, quiet, threads, model=model, wb=write_boot)
+ fme.run_tree(ALIGNMENT, boot, GENEPATH, quiet, threads, model=model, matrix=write_matrix, wb=write_boot)
assert "Phylip alignment file already existing." in caplog.text
assert ("The Phylip alignment file "
"test/data/tree/generated_by_unit-tests/exp_pers4genomes.grp.aln.phylip "
--
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