Commit ea85c66d authored by Amandine  PERRIN's avatar Amandine PERRIN
Browse files

change tab to space between rep name and info in Replicons directory

parent 647a117b
Pipeline #66654 passed with stages
in 5 minutes and 38 seconds
......@@ -1148,7 +1148,7 @@ def get_genome_contigs_and_rename(gembase_name, gpath, outfile, logger):
# - add its name with its original name to
# - write header ("<contig name> <size>") to replicon file
if prev_cont:
cont = "\t".join([prev_cont, str(cont_size)]) + "\n"
cont = " ".join([prev_cont, str(cont_size)]) + "\n"
prevcont_nohead = prev_cont.split(">")[1]
prev_orig_name_nohead = prev_orig_name.split(">")[1]
if prev_orig_name_nohead:
......@@ -1172,7 +1172,7 @@ def get_genome_contigs_and_rename(gembase_name, gpath, outfile, logger):
cont_size += len(line.strip())
# Write last contig, if there is one (if gpath not empty)
if prev_cont:
cont = "\t".join([prev_cont, str(cont_size)]) + "\n"
cont = " ".join([prev_cont, str(cont_size)]) + "\n"
prevcont_nohead = "".join(prev_cont.split(">")[1:])
prev_orig_name_nohead = prev_orig_name.split(">")[1]
if prev_orig_name_nohead:
......
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