diff --git a/PanACoTA/annotate_module/general_format_functions.py b/PanACoTA/annotate_module/general_format_functions.py index 6c23d0237b506015bf3ec0ff46ff77154ec85789..594325e830161fe432e67b6a52681c7f442dbf99 100644 --- a/PanACoTA/annotate_module/general_format_functions.py +++ b/PanACoTA/annotate_module/general_format_functions.py @@ -179,7 +179,7 @@ def handle_genome(args): logger = logging.getLogger('format.handle_genome') # Handle genome ok_format = format_one_genome(gpath, name, annot_path, lst_dir, - prot_dir, gene_dir, rep_dir, gff_dir, logger, changed_name=changed) + prot_dir, gene_dir, rep_dir, gff_dir, logger) return ok_format, genome