From f500aeed52a77afd5483dde5e97e0bbdb0f01320 Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Mon, 24 Aug 2020 10:04:48 +0200
Subject: [PATCH] Remove useless optional argument when launchiing formatting
---
PanACoTA/annotate_module/general_format_functions.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/PanACoTA/annotate_module/general_format_functions.py b/PanACoTA/annotate_module/general_format_functions.py
index 6c23d023..594325e8 100644
--- a/PanACoTA/annotate_module/general_format_functions.py
+++ b/PanACoTA/annotate_module/general_format_functions.py
@@ -179,7 +179,7 @@ def handle_genome(args):
logger = logging.getLogger('format.handle_genome')
# Handle genome
ok_format = format_one_genome(gpath, name, annot_path, lst_dir,
- prot_dir, gene_dir, rep_dir, gff_dir, logger, changed_name=changed)
+ prot_dir, gene_dir, rep_dir, gff_dir, logger)
return ok_format, genome
--
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