diff --git a/PanACoTA/utils.py b/PanACoTA/utils.py index de8118c8f8904ce71963d5afb6edca2d6aa67ac6..11eee75f6007b6d32a09fec6ada4d44e85575d81 100755 --- a/PanACoTA/utils.py +++ b/PanACoTA/utils.py @@ -56,6 +56,10 @@ def init_logger(logfile_base, level, name, details=False, verbose=0, quiet=False minimum level that must be considered. name : str or None if we need to name the logger (used for tests) + details : bool + if True, force creation of .log.details file. Otherwise, just create + it if needed according to level + verbose : int be more verbose: default (0): info in stdout, error and more in stderr ; @@ -505,6 +509,7 @@ def sort_genomes_by_name(x): variable to take into account for sorting. If format is ESCO.1512.00001 return\ ESCO and 00001. Otherwise, just return x itself (sort by alphabetical order) """ + # get gembase name if isinstance(x, tuple): x = x[1][0]