From f8547838b28618acaf5761fa3f8828322e97e468 Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Tue, 12 Nov 2019 11:50:40 +0100
Subject: [PATCH] Update docstring for utils functions
---
PanACoTA/utils.py | 5 +++++
1 file changed, 5 insertions(+)
diff --git a/PanACoTA/utils.py b/PanACoTA/utils.py
index de8118c8..11eee75f 100755
--- a/PanACoTA/utils.py
+++ b/PanACoTA/utils.py
@@ -56,6 +56,10 @@ def init_logger(logfile_base, level, name, details=False, verbose=0, quiet=False
minimum level that must be considered.
name : str or None
if we need to name the logger (used for tests)
+ details : bool
+ if True, force creation of .log.details file. Otherwise, just create
+ it if needed according to level
+
verbose : int
be more verbose:
default (0): info in stdout, error and more in stderr ;
@@ -505,6 +509,7 @@ def sort_genomes_by_name(x):
variable to take into account for sorting. If format is ESCO.1512.00001 return\
ESCO and 00001. Otherwise, just return x itself (sort by alphabetical order)
"""
+ # get gembase name
if isinstance(x, tuple):
x = x[1][0]
--
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