diff --git a/PanACoTA/annotate_module/genome_seq_functions.py b/PanACoTA/annotate_module/genome_seq_functions.py index c5b2105ced96711f651445feef04b4e0345c7f5d..26761fb19d0ce16537bdc8d82dc2ad9e167a6690 100755 --- a/PanACoTA/annotate_module/genome_seq_functions.py +++ b/PanACoTA/annotate_module/genome_seq_functions.py @@ -117,7 +117,7 @@ def analyse_genome(genome, dbpath, tmp_path, cut, pat, genomes, soft): pattern on which contigs must be cut. ex: "NNNNN" genomes : dict {genome_file: [genome_name]} as input, and will be changed to\ - -> {genome_file: [genome_name, path, path_annotate, gsize, nbcont, L90]} + {genome_file: [genome_name, path, path_annotate, gsize, nbcont, L90]} soft : str soft used (prokka, prodigal, or None if called by prepare module) @@ -125,6 +125,8 @@ def analyse_genome(genome, dbpath, tmp_path, cut, pat, genomes, soft): ------- bool True if genome analysis went well, False otherwise + Modifies 'genomes' for the analysed genome: -> {genome_file: [genome_name, path, + path_annotate, gsize, nbcont, L90]} """ gpath, grespath = get_output_dir(soft, dbpath, tmp_path, genome, cut, pat) # Open original sequence file