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Amandine PERRIN
pipeline_annotation
Commits
fb17e9b8
Commit
fb17e9b8
authored
Apr 19, 2017
by
Amandine PERRIN
Browse files
install freetype
parent
06e7a633
Pipeline
#1831
passed with stage
in 3 minutes and 31 seconds
Changes
1
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1
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fb17e9b8
...
...
@@ -6,30 +6,31 @@ RUN apt-get update &&\
apt-get
install
-y
\
python3-pip
\
wget
\
pkg-config
&&
\
pkg-config
\
freetype
*
&&
\
apt-get clean
# Update pip
RUN
pip3
install
--upgrade
pip
# Install barrnap
WORKDIR
/tmp
RUN
wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz
&&
\
tar
-xf
0.8.tar.gz
&&
\
rm
0.8.tar.gz
RUN
ln
-s
/tmp/barrnap-0.8/bin/barrnap /usr/local/bin
# Install prokka:
WORKDIR
/tmp
RUN
apt-get
install
-y
\
libdatetime-perl
\
libxml-simple-perl
\
libdigest-md5-perl
\
git
\
default-jre
\
bioperl
RUN
git clone https://github.com/tseemann/prokka.git
RUN
/tmp/prokka/bin/prokka
--setupdb
RUN
ln
-s
/tmp/prokka/bin/prokka /usr/local/bin
##
# Install barrnap
##
WORKDIR /tmp
##
RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\
##
tar -xf 0.8.tar.gz &&\
##
rm 0.8.tar.gz
##
##
RUN ln -s /tmp/barrnap-0.8/bin/barrnap /usr/local/bin
##
##
# Install prokka:
##
WORKDIR /tmp
##
RUN apt-get install -y\
##
libdatetime-perl \
##
libxml-simple-perl \
##
libdigest-md5-perl \
##
git \
##
default-jre \
##
bioperl
##
##
RUN git clone https://github.com/tseemann/prokka.git
##
RUN /tmp/prokka/bin/prokka --setupdb
##
RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin
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