Commit fe4fd8c2 authored by Amandine  PERRIN's avatar Amandine PERRIN
Browse files

Recover full dockerfile

(with barrnap and prokka installations)
parent 43c36d08
Pipeline #1843 passed with stage
in 12 minutes and 36 seconds
......@@ -8,38 +8,28 @@ RUN apt-get update &&\
RUN apt-get install -y \
wget \
python3-pip
## # Install packages required to install matplotlib
## RUN apt-get install -y \
## pkg-config \
## libagg-dev \
## libpng-dev \
## libjpeg8-dev \
## libfreetype6-dev
# Update pip
RUN pip3 install --upgrade pip
# Install matplotlib (too long to do each time)
# RUN pip3 install matplotlib
# Install barrnap
WORKDIR /tmp
RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\
tar -xf 0.8.tar.gz &&\
rm 0.8.tar.gz
RUN ln -s /tmp/barrnap-0.8/bin/barrnap /usr/local/bin
# Remove heavy useless files
RUN rm -r /tmp/barrnap-0.8/examples /tmp/barrnap-0.8/build/*.aln
## # Install barrnap
## WORKDIR /tmp
## RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\
## tar -xf 0.8.tar.gz &&\
## rm 0.8.tar.gz
##
## RUN ln -s /tmp/barrnap-0.8/bin/barrnap /usr/local/bin
##
## # Install prokka:
## WORKDIR /tmp
## RUN apt-get install -y\
## libdatetime-perl \
## libxml-simple-perl \
## libdigest-md5-perl \
## git \
## default-jre \
## bioperl
##
## RUN git clone https://github.com/tseemann/prokka.git
## RUN /tmp/prokka/bin/prokka --setupdb
## RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin
# Install prokka:
WORKDIR /tmp
RUN apt-get install -y\
libdatetime-perl \
libxml-simple-perl \
libdigest-md5-perl \
git \
default-jre \
bioperl
RUN git clone https://github.com/tseemann/prokka.git
RUN /tmp/prokka/bin/prokka --setupdb
RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin
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