Recover full dockerfile

(with barrnap and prokka installations)

Dockerfile

@@ -8,38 +8,28 @@ RUN apt-get update &&\
 RUN apt-get install -y \
         wget \
         python3-pip
-## # Install packages required to install matplotlib
-## RUN apt-get install -y \
-##         pkg-config \
-##         libagg-dev \
-##         libpng-dev \
-##         libjpeg8-dev \
-##         libfreetype6-dev
 
 # Update pip
 RUN pip3 install --upgrade pip
 
-# Install matplotlib (too long to do each time)
-# RUN pip3 install matplotlib
+# Install barrnap
+WORKDIR /tmp
+RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\
+    tar -xf 0.8.tar.gz &&\
+    rm 0.8.tar.gz
+RUN ln -s /tmp/barrnap-0.8/bin/barrnap /usr/local/bin
+# Remove heavy useless files
+RUN rm -r /tmp/barrnap-0.8/examples /tmp/barrnap-0.8/build/*.aln
 
-## # Install barrnap
-## WORKDIR /tmp
-## RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\
-##     tar -xf 0.8.tar.gz &&\
-##     rm 0.8.tar.gz
-##
-## RUN ln -s /tmp/barrnap-0.8/bin/barrnap /usr/local/bin
-##
-## # Install prokka:
-## WORKDIR /tmp
-## RUN apt-get install -y\
-##         libdatetime-perl \
-##         libxml-simple-perl \
-##         libdigest-md5-perl \
-##         git \
-##         default-jre \
-##         bioperl
-##
-## RUN git clone https://github.com/tseemann/prokka.git
-## RUN /tmp/prokka/bin/prokka --setupdb
-## RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin
+# Install prokka:
+WORKDIR /tmp
+RUN apt-get install -y\
+        libdatetime-perl \
+        libxml-simple-perl \
+        libdigest-md5-perl \
+        git \
+        default-jre \
+        bioperl
+RUN git clone https://github.com/tseemann/prokka.git
+RUN /tmp/prokka/bin/prokka --setupdb
+RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin