- 27 Apr, 2021 2 commits
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Amandine PERRIN authored
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Amandine PERRIN authored
gembase format is ESCO.0421.00001.prt for filenames and ESCO.0421.00001.00001i_0001 for protein names gembase complete genomes format is ESCO.0421.00001.C001.prt nd EXCO.0421.00001.C001_0001 for protein names -> now, genome names can contain a '.' (but still no '_')
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- 25 Mar, 2021 6 commits
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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- 12 Mar, 2021 9 commits
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
before, it was always the case. Now, there is an option to give a subset of genomes. In all module, give no subset, still run on all genomes
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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- 09 Mar, 2021 13 commits
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
- save family number as int and not str - raise error if no family found
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Amandine PERRIN authored
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Amandine PERRIN authored
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- 08 Mar, 2021 2 commits
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Amandine PERRIN authored
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Amandine PERRIN authored
Before, we used a pool of size 1 to run mmseqs_clust inside, and showed a progress bar in the main thread. Now, run_mmseqs_clust runs in the main thread, and a progressbar is running in a separate thread, that is stoped when mmseqs_clust has finished.
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- 05 Mar, 2021 8 commits
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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Amandine PERRIN authored
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