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Bioimage Analysis
Active Contour
Commits
61f8ef25
Commit
61f8ef25
authored
Aug 25, 2020
by
Amandine TOURNAY
Browse files
Mavenized plugin
parent
5eaaaed2
Changes
12
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.gitignore
View file @
61f8ef25
bin
pluginfile-active-contours*.jar
ActiveContours.jar
target/
.idea/
*.iml
.classpath
.project
pom.xml
0 → 100644
View file @
61f8ef25
<?xml version="1.0" encoding="UTF-8"?>
<project
xmlns=
"http://maven.apache.org/POM/4.0.0"
xmlns:xsi=
"http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation=
"http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"
>
<modelVersion>
4.0.0
</modelVersion>
<groupId>
org.bioimageanalysis.icy
</groupId>
<artifactId>
icy-active-contours
</artifactId>
<version>
4.4.10
</version>
<packaging>
jar
</packaging>
<name>
Actve Contours
</name>
<description>
Automatically segment the boundary of a nucleus or cell starting from an approximate ROI. It supports 2D and 3D processing
(requires a 3D starter ROI) and tracking of slowly moving cells. Ideal to study cell morphodynamics.
</description>
<properties>
<project.build.sourceEncoding>
UTF-8
</project.build.sourceEncoding>
<jdk.version>
1.8
</jdk.version>
<maven.compiler.source>
1.8
</maven.compiler.source>
<maven.compiler.target>
1.8
</maven.compiler.target>
<outputJar>
${project.build.outputDirectory}/../plugin
</outputJar>
</properties>
<build>
<finalName>
${project.artifactId}
</finalName>
<plugins>
<plugin>
<groupId>
org.apache.maven.plugins
</groupId>
<artifactId>
maven-jar-plugin
</artifactId>
<version>
3.1.2
</version>
<configuration>
<outputDirectory>
${outputJar}
</outputDirectory>
<archive>
<manifest>
<addClasspath>
true
</addClasspath>
<mainClass>
plugins.adufour.activecontours
</mainClass>
</manifest>
</archive>
</configuration>
</plugin>
</plugins>
</build>
<dependencies>
<dependency>
<groupId>
org.bioimageanalysis.icy
</groupId>
<artifactId>
icy-kernel
</artifactId>
<version>
2.1.0
</version>
</dependency>
<dependency>
<groupId>
org.bioimageanalysis.icy
</groupId>
<artifactId>
icy-3d-mesh-roi
</artifactId>
<version>
1.4.7
</version>
</dependency>
<dependency>
<groupId>
org.bioimageanalysis.icy
</groupId>
<artifactId>
icy-blocks
</artifactId>
<version>
1.0.1
</version>
</dependency>
<dependency>
<groupId>
org.bioimageanalysis.icy
</groupId>
<artifactId>
icy-fill-holes-in-roi
</artifactId>
<version>
1.1
</version>
</dependency>
<dependency>
<groupId>
org.bioimageanalysis.icy
</groupId>
<artifactId>
icy-filter-toolbox
</artifactId>
<version>
4.3.1
</version>
</dependency>
<dependency>
<groupId>
org.bioimageanalysis.icy
</groupId>
<artifactId>
icy-hk-means
</artifactId>
<version>
2.9.1
</version>
</dependency>
<dependency>
<groupId>
org.bioimageanalysis.icy
</groupId>
<artifactId>
icy-track-manager
</artifactId>
<version>
1.4.5
</version>
</dependency>
<dependency>
<groupId>
java3d
</groupId>
<artifactId>
j3d-core
</artifactId>
<version>
1.3.1
</version>
</dependency>
<dependency>
<groupId>
org.jfree
</groupId>
<artifactId>
jfreechart
</artifactId>
<version>
1.5.0
</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>
icy
</id>
<url>
https://icy-nexus.pasteur.fr/repository/Icy/
</url>
</repository>
</repositories>
<distributionManagement>
<snapshotRepository>
<id>
icy-dev
</id>
<name>
icy-dev
</name>
<url>
https://icy-nexus-dev.pasteur.cloud/repository/icy-core/
</url>
</snapshotRepository>
<repository>
<id>
icy-prod
</id>
<name>
icy-prod
</name>
<url>
https://icy-nexus.pasteur.fr/repository/icy-core/
</url>
</repository>
</distributionManagement>
</project>
\ No newline at end of file
src/plugins/adufour/activecontours/ActiveContour.java
→
src/
main/java/
plugins/adufour/activecontours/ActiveContour.java
View file @
61f8ef25
File moved
src/plugins/adufour/activecontours/ActiveContours.java
→
src/
main/java/
plugins/adufour/activecontours/ActiveContours.java
View file @
61f8ef25
File moved
src/plugins/adufour/activecontours/ActiveContoursOverlay.java
→
src/
main/java/
plugins/adufour/activecontours/ActiveContoursOverlay.java
View file @
61f8ef25
File moved
src/plugins/adufour/activecontours/DeformationProfiler.java
→
src/
main/java/
plugins/adufour/activecontours/DeformationProfiler.java
View file @
61f8ef25
File moved
src/plugins/adufour/activecontours/Mesh3D.java
→
src/
main/java/
plugins/adufour/activecontours/Mesh3D.java
View file @
61f8ef25
File moved
src/plugins/adufour/activecontours/Polygon2D.java
→
src/
main/java/
plugins/adufour/activecontours/Polygon2D.java
View file @
61f8ef25
File moved
src/plugins/adufour/activecontours/ReSampler.java
→
src/
main/java/
plugins/adufour/activecontours/ReSampler.java
View file @
61f8ef25
File moved
src/plugins/adufour/activecontours/SaveMeshTracksToVTK.java
→
src/
main/java/
plugins/adufour/activecontours/SaveMeshTracksToVTK.java
View file @
61f8ef25
File moved
src/plugins/adufour/activecontours/SlidingWindow.java
→
src/
main/java/
plugins/adufour/activecontours/SlidingWindow.java
View file @
61f8ef25
File moved
src/plugins/adufour/activecontours/TopologyException.java
→
src/
main/java/
plugins/adufour/activecontours/TopologyException.java
View file @
61f8ef25
File moved
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