diff --git a/pom.xml b/pom.xml
index 7ecea948517064ae638151ee34e5d7a738bfb9d0..a104bf4fb9e387037a5a297e8f045c17e14b71c4 100644
--- a/pom.xml
+++ b/pom.xml
@@ -11,7 +11,7 @@
</parent>
<artifactId>icy-connected-components</artifactId>
- <version>4.8.6</version>
+ <version>4.8.7</version>
<packaging>jar</packaging>
diff --git a/src/main/java/plugins/adufour/connectedcomponents/ConnectedComponent.java b/src/main/java/plugins/adufour/connectedcomponents/ConnectedComponent.java
index fdc1ab7bad74b6c17a81604524f261fd232161ff..6fad271bf9b35069b854d39ca9f2e79e10759531 100644
--- a/src/main/java/plugins/adufour/connectedcomponents/ConnectedComponent.java
+++ b/src/main/java/plugins/adufour/connectedcomponents/ConnectedComponent.java
@@ -61,7 +61,7 @@ public class ConnectedComponent extends Detection implements Iterable<Point3i>
/**
* Creates a new connected component with given initial capacity
*
- * @param initialCapacity
+ * @param initialCapacity int
*/
public ConnectedComponent(int initialCapacity)
{
@@ -167,7 +167,7 @@ public class ConnectedComponent extends Detection implements Iterable<Point3i>
* Computes the average intensity of the component on each channel of the given sequence, at the
* time point where this component was found
*
- * @param sequence
+ * @param sequence Sequence
* @return an array containing the average intensity of the component in each band
*/
public double[] computeMeanIntensity(Sequence sequence)
@@ -179,7 +179,8 @@ public class ConnectedComponent extends Detection implements Iterable<Point3i>
* Computes the average intensity of the component on each channel of the given sequence and the
* specified time point
*
- * @param sequence
+ * @param sequence Sequence
+ * @param t int
* @return an array containing the average intensity of the component in each band
*/
public double[] computeMeanIntensity(Sequence sequence, int t)
@@ -206,7 +207,7 @@ public class ConnectedComponent extends Detection implements Iterable<Point3i>
* Computes the minimum intensity of the component on each channel of the given sequence, at the
* time point where this component was found
*
- * @param sequence
+ * @param sequence Sequence
* @return an array containing the average intensity of the component in each band
*/
public double[] computeMinIntensity(Sequence sequence)
@@ -218,7 +219,8 @@ public class ConnectedComponent extends Detection implements Iterable<Point3i>
* Computes the minimum intensity of the component on each channel of the given sequence and the
* specified time point
*
- * @param sequence
+ * @param sequence Sequence
+ * @param t int
* @return an array containing the average intensity of the component in each band
*/
public double[] computeMinIntensity(Sequence sequence, int t)
@@ -247,7 +249,7 @@ public class ConnectedComponent extends Detection implements Iterable<Point3i>
* Computes the maximum intensity of the component on each channel of the given sequence, at the
* time point where this component was found
*
- * @param sequence
+ * @param sequence Sequence
* @return an array containing the average intensity of the component in each band
*/
public double[] computeMaxIntensity(Sequence sequence)
@@ -258,8 +260,9 @@ public class ConnectedComponent extends Detection implements Iterable<Point3i>
/**
* Computes the maximum intensity pixel of the component on each channel of the given sequence
* and the specified time point
- *
- * @param sequence
+ *
+ * @param sequence Sequence
+ * @param t int
* @return an array containing the average intensity of the component in each band
*/
public double[] computeMaxIntensity(Sequence sequence, int t)
@@ -289,7 +292,7 @@ public class ConnectedComponent extends Detection implements Iterable<Point3i>
*
* @param component
* the component to compute the distance to
- * @return
+ * @return double
*/
public double distanceTo(ConnectedComponent component)
{
@@ -313,7 +316,7 @@ public class ConnectedComponent extends Detection implements Iterable<Point3i>
* Returns an iterator over the internal points array. Useful to browse all points without
* duplicating the array
*
- * @return
+ * @return Point3i Iterator
*/
public Iterable<Point3i> getIterablePoints()
{
@@ -323,10 +326,10 @@ public class ConnectedComponent extends Detection implements Iterable<Point3i>
/**
* Computes the major axis of the object, which is the vector between the two most distant
* points of this component. Note that the result vector orientation is meaningless if the
- * component is spherical.<br/>
+ * component is spherical.<br>
* NOTE: this is an potentially expensive operation: O(N log N)
*
- * @return
+ * @return 3D Vector
*/
public Vector3d getMajorAxis()
{
@@ -401,7 +404,7 @@ public class ConnectedComponent extends Detection implements Iterable<Point3i>
/**
* Computes the mass center of this component
*
- * @return
+ * @return 3D Point
*/
public Point3d getMassCenter()
{
@@ -416,8 +419,8 @@ public class ConnectedComponent extends Detection implements Iterable<Point3i>
/**
* Returns the maximum distance between any point of this component and the specified point
*
- * @param point
- * @return
+ * @param point 3D Point
+ * @return double
*/
public double getMaxDistanceTo(Point3d point)
{
@@ -569,7 +572,7 @@ public class ConnectedComponent extends Detection implements Iterable<Point3i>
}
/**
- * @param component
+ * @param component ConnectedComponent
* @return true if this component intersects (e.g. has at least one voxel overlapping with) the
* specified component
*/
@@ -598,8 +601,8 @@ public class ConnectedComponent extends Detection implements Iterable<Point3i>
/**
* Creates a new component with the intersection between the current and specified components
*
- * @param component
- * @return
+ * @param component ConnectedComponent
+ * @return ConnectedComponent
*/
public ConnectedComponent intersection(ConnectedComponent component)
{
@@ -628,8 +631,10 @@ public class ConnectedComponent extends Detection implements Iterable<Point3i>
/**
* Paints this component onto the given sequence with the specified value
*
- * @param s
- * @param value
+ * @param s Sequence
+ * @param t int
+ * @param c int
+ * @param value double
*/
public void paintOnSequence(Sequence s, int t, int c, double value)
{
@@ -672,7 +677,7 @@ public class ConnectedComponent extends Detection implements Iterable<Point3i>
* Creates a new byte sequence filled with this component. The sequence has a unique time point,
* and the image size is equal to the bounding box of this component.
*
- * @return
+ * @return Sequence
*/
public Sequence toSequence()
{
diff --git a/src/main/java/plugins/adufour/connectedcomponents/ConnectedComponentDescriptor.java b/src/main/java/plugins/adufour/connectedcomponents/ConnectedComponentDescriptor.java
index 67fded23ed65b6d8a09b9d15d4776b9a97ffb838..dd037cbb5efe3ed313f1973a3979d7d4c68de1ef 100644
--- a/src/main/java/plugins/adufour/connectedcomponents/ConnectedComponentDescriptor.java
+++ b/src/main/java/plugins/adufour/connectedcomponents/ConnectedComponentDescriptor.java
@@ -84,7 +84,7 @@ public class ConnectedComponentDescriptor extends Plugin implements PluginBundle
}
/**
- * @param cc
+ * @param cc ConnectedComponent
* @return a triplet representing the radiuses of the best fitting ellipse (the third value is 0
* for 2D objects)
*/
@@ -175,7 +175,7 @@ public class ConnectedComponentDescriptor extends Plugin implements PluginBundle
* the input component
* @param bsCenter
* the computed center of the bounding sphere
- * @param maxBounds
+ * @param bsRadius
* the computed radius of the bounding sphere
*/
public void computeBoundingSphere(ConnectedComponent cc, Point3d bsCenter, VarDouble bsRadius)
@@ -185,6 +185,7 @@ public class ConnectedComponentDescriptor extends Plugin implements PluginBundle
}
/**
+ * @param cc ConnectedComponent
* @param contourPoints
* (set to <code>null</code> if not wanted) an output list of extracted contour
* points
@@ -300,7 +301,7 @@ public class ConnectedComponentDescriptor extends Plugin implements PluginBundle
/**
* Compute the sphericity (circularity in 2D) of the given component, measured as a weighted
- * ratio between the component's dimensions.<br/>
+ * ratio between the component's dimensions.<br>
* NOTE: the circularity index is adjusted to work with digitized contours, and partially
* corrects for digitization artifacts (see the
* {@link #computePerimeter(ConnectedComponent, ArrayList, Sequence)} method)
@@ -379,7 +380,7 @@ public class ConnectedComponentDescriptor extends Plugin implements PluginBundle
}
/**
- * @param cc
+ * @param cc ConnectedComponent
* @return The hull ratio, measured as the ratio between the object volume and its convex hull
* (envelope)
*/
@@ -391,7 +392,7 @@ public class ConnectedComponentDescriptor extends Plugin implements PluginBundle
}
/**
- * @param cc
+ * @param cc ConnectedComponent
* @return An array containing [contour, area] of the smallest convex envelope surrounding the
* object. The 2 values are returned together because their computation is simultaneous
* (in the 3D case only)
diff --git a/src/main/java/plugins/adufour/connectedcomponents/ConnectedComponents.java b/src/main/java/plugins/adufour/connectedcomponents/ConnectedComponents.java
index 8f4fe76764a43c5956c919d8b51d2ee8b9ac0e9e..1360ebefe9b056ebe31eefffa5fe16c2495a2d7f 100644
--- a/src/main/java/plugins/adufour/connectedcomponents/ConnectedComponents.java
+++ b/src/main/java/plugins/adufour/connectedcomponents/ConnectedComponents.java
@@ -1347,8 +1347,8 @@ public class ConnectedComponents extends EzPlug implements Block
*
* @param output
* a sequence of type INT
- * @param components
- * @param comparator
+ * @param components Map of List of ConnectedComponent
+ * @param comparator Comparator of ConnectedComponents
*/
public static void createLabeledSequence(Sequence output, Map<Integer, List<ConnectedComponent>> components,
Comparator<ConnectedComponent> comparator)