diff --git a/.gitignore b/.gitignore index 517b373b236976d2739f7f1621b70204f403ecf2..23efeb8c67cfc0bab8b0d9644729c9d8ca42eb34 100644 --- a/.gitignore +++ b/.gitignore @@ -1,2 +1,6 @@ bin pluginfile-track-manager*.jar +.idea/ +target/ +.settings/ +*.iml \ No newline at end of file diff --git a/pom.xml b/pom.xml new file mode 100644 index 0000000000000000000000000000000000000000..3b4db040e815168ff1d0d6d57a31b21b43aed67d --- /dev/null +++ b/pom.xml @@ -0,0 +1,80 @@ +<?xml version="1.0" encoding="UTF-8"?> +<project xmlns="http://maven.apache.org/POM/4.0.0" + xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" + xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"> + <modelVersion>4.0.0</modelVersion> + + <groupId>org.bioimageanalysis.icy</groupId> + <artifactId>track-manager</artifactId> + <version>1.4.5</version> + + <name>Track Manager</name> + <description> + he track manager enables the use of DSP-like trackProcessors. + This can affect the display of tracks, selection in time or by ROIs, and also compute some views like the overlaid and animated local flow graph, polar graph. + </description> + + <properties> + <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding> + <jdk.version>1.8</jdk.version> + + <maven.compiler.source>1.8</maven.compiler.source> + <maven.compiler.target>1.8</maven.compiler.target> + + <outputJar>${project.build.outputDirectory}/../plugin</outputJar> + </properties> + + <build> + <finalName>${project.artifactId}</finalName> + + <plugins> + <plugin> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-jar-plugin</artifactId> + <version>3.1.2</version> + <configuration> + <outputDirectory>${outputJar}</outputDirectory> + <archive> + <manifest> + <addClasspath>true</addClasspath> + <mainClass>plugins.fab.trackmanager.TrackManager</mainClass> + </manifest> + </archive> + </configuration> + </plugin> + </plugins> + </build> + + <dependencies> + <dependency> + <groupId>org.bioimageanalysis.icy</groupId> + <artifactId>icy-kernel</artifactId> + <version>2.1.0</version> + </dependency> + <dependency> + <groupId>org.bioimageanalysis.icy</groupId> + <artifactId>icy-connected-components</artifactId> + <version>4.8.5</version> + </dependency> + </dependencies> + + <repositories> + <repository> + <id>icy</id> + <url>https://icy-nexus.pasteur.fr/repository/Icy/</url> + </repository> + </repositories> + + <distributionManagement> + <repository> + <id>icy-prod</id> + <name>icy-prod</name> + <url>https://icy-nexus.pasteur.fr/repository/icy-core/</url> + </repository> + <snapshotRepository> + <id>icy-dev</id> + <name>icy-dev</name> + <url>https://icy-nexus-dev.pasteur.cloud/repository/icy-core/</url> + </snapshotRepository> + </distributionManagement> +</project> \ No newline at end of file diff --git a/src/plugins/fab/trackmanager/Link.java b/src/main/java/plugins/fab/trackmanager/Link.java similarity index 100% rename from src/plugins/fab/trackmanager/Link.java rename to src/main/java/plugins/fab/trackmanager/Link.java diff --git a/src/plugins/fab/trackmanager/PluginTrackManagerProcessor.java b/src/main/java/plugins/fab/trackmanager/PluginTrackManagerProcessor.java similarity index 100% rename from src/plugins/fab/trackmanager/PluginTrackManagerProcessor.java rename to src/main/java/plugins/fab/trackmanager/PluginTrackManagerProcessor.java diff --git a/src/plugins/fab/trackmanager/TrackDetection.java b/src/main/java/plugins/fab/trackmanager/TrackDetection.java similarity index 100% rename from src/plugins/fab/trackmanager/TrackDetection.java rename to src/main/java/plugins/fab/trackmanager/TrackDetection.java diff --git a/src/plugins/fab/trackmanager/TrackGroup.java b/src/main/java/plugins/fab/trackmanager/TrackGroup.java similarity index 100% rename from src/plugins/fab/trackmanager/TrackGroup.java rename to src/main/java/plugins/fab/trackmanager/TrackGroup.java diff --git a/src/plugins/fab/trackmanager/TrackLengthDialog.java b/src/main/java/plugins/fab/trackmanager/TrackLengthDialog.java similarity index 100% rename from src/plugins/fab/trackmanager/TrackLengthDialog.java rename to src/main/java/plugins/fab/trackmanager/TrackLengthDialog.java diff --git a/src/plugins/fab/trackmanager/TrackManager.java b/src/main/java/plugins/fab/trackmanager/TrackManager.java similarity index 100% rename from src/plugins/fab/trackmanager/TrackManager.java rename to src/main/java/plugins/fab/trackmanager/TrackManager.java diff --git a/src/plugins/fab/trackmanager/TrackManagerPainter.java b/src/main/java/plugins/fab/trackmanager/TrackManagerPainter.java similarity index 100% rename from src/plugins/fab/trackmanager/TrackManagerPainter.java rename to src/main/java/plugins/fab/trackmanager/TrackManagerPainter.java diff --git a/src/plugins/fab/trackmanager/TrackManagerProcessorListener.java b/src/main/java/plugins/fab/trackmanager/TrackManagerProcessorListener.java similarity index 100% rename from src/plugins/fab/trackmanager/TrackManagerProcessorListener.java rename to src/main/java/plugins/fab/trackmanager/TrackManagerProcessorListener.java diff --git a/src/plugins/fab/trackmanager/TrackPainterChangeEvent.java b/src/main/java/plugins/fab/trackmanager/TrackPainterChangeEvent.java similarity index 100% rename from src/plugins/fab/trackmanager/TrackPainterChangeEvent.java rename to src/main/java/plugins/fab/trackmanager/TrackPainterChangeEvent.java diff --git a/src/plugins/fab/trackmanager/TrackPainterListener.java b/src/main/java/plugins/fab/trackmanager/TrackPainterListener.java similarity index 100% rename from src/plugins/fab/trackmanager/TrackPainterListener.java rename to src/main/java/plugins/fab/trackmanager/TrackPainterListener.java diff --git a/src/plugins/fab/trackmanager/TrackPanel.java b/src/main/java/plugins/fab/trackmanager/TrackPanel.java similarity index 100% rename from src/plugins/fab/trackmanager/TrackPanel.java rename to src/main/java/plugins/fab/trackmanager/TrackPanel.java diff --git a/src/plugins/fab/trackmanager/TrackPool.java b/src/main/java/plugins/fab/trackmanager/TrackPool.java similarity index 100% rename from src/plugins/fab/trackmanager/TrackPool.java rename to src/main/java/plugins/fab/trackmanager/TrackPool.java diff --git a/src/plugins/fab/trackmanager/TrackSegment.java b/src/main/java/plugins/fab/trackmanager/TrackSegment.java similarity index 100% rename from src/plugins/fab/trackmanager/TrackSegment.java rename to src/main/java/plugins/fab/trackmanager/TrackSegment.java