diff --git a/pom.xml b/pom.xml
index ee4c36fff919c0afab7973220d1d5e39c7ecb6e6..d3adf4d7ee312f4e019f848d95653415c5f2978f 100644
--- a/pom.xml
+++ b/pom.xml
@@ -7,11 +7,11 @@
<parent>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>pom-icy</artifactId>
- <version>3.0.0-a.1</version>
+ <version>3.0.0-a.3</version>
</parent>
<artifactId>vecmath</artifactId>
- <version>2.0.0-a.1</version>
+ <version>2.0.0-a.2</version>
<name>Vecmath</name>
<description>Provides 3D vector mathematics classes.</description>
@@ -23,11 +23,4 @@
<version>1.5.2</version>
</dependency>
</dependencies>
-
- <repositories>
- <repository>
- <id>icy</id>
- <url>https://nexus-icy.pasteur.cloud/repository/icy/</url>
- </repository>
- </repositories>
</project>
\ No newline at end of file
diff --git a/src/main/java/plugins/stef/library/VecmathPlugin.java b/src/main/java/plugins/stef/library/VecmathPlugin.java
index f584a73c30b90aa767a28e17b3064f783ed0b2ab..f7f30ff9541e0024876859cb6d6a1b6301629f82 100644
--- a/src/main/java/plugins/stef/library/VecmathPlugin.java
+++ b/src/main/java/plugins/stef/library/VecmathPlugin.java
@@ -1,9 +1,26 @@
+/*
+ * Copyright (c) 2010-2024. Institut Pasteur.
+ *
+ * This file is part of Icy.
+ * Icy is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * Icy is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Icy. If not, see <https://www.gnu.org/licenses/>.
+ */
+
package plugins.stef.library;
import org.bioimageanalysis.icy.extension.plugin.abstract_.Plugin;
import org.bioimageanalysis.icy.extension.plugin.annotation_.IcyPluginIcon;
import org.bioimageanalysis.icy.extension.plugin.annotation_.IcyPluginName;
-import org.bioimageanalysis.icy.extension.plugin.interface_.PluginLibrary;
/**
* Vecmath library for Icy
@@ -11,7 +28,7 @@ import org.bioimageanalysis.icy.extension.plugin.interface_.PluginLibrary;
* @author Stephane Dallongeville
*/
@IcyPluginName("Vecmath")
-@IcyPluginIcon(path = "/java.svg")
-public class VecmathPlugin extends Plugin implements PluginLibrary {
+@IcyPluginIcon(path = "/plugins/stef/library/vecmath/java.svg")
+public class VecmathPlugin extends Plugin {
//
}
diff --git a/src/main/resources/java.svg b/src/main/resources/plugins/stef/library/vecmath/java.svg
similarity index 100%
rename from src/main/resources/java.svg
rename to src/main/resources/plugins/stef/library/vecmath/java.svg
diff --git a/src/main/resources_old/COPYRIGHT.txt b/src/main/resources_old/COPYRIGHT.txt
deleted file mode 100644
index 177e113992a498482db7b4a3de5aa960ff1b1f2a..0000000000000000000000000000000000000000
--- a/src/main/resources_old/COPYRIGHT.txt
+++ /dev/null
@@ -1,77 +0,0 @@
-Copyright 1996-2008 Sun Microsystems, Inc., 4150 Network Circle, Santa
-Clara, California 95054, U.S.A. All rights reserved.
-
-Sun Microsystems, Inc. has intellectual property rights relating to
-technology embodied in the product that is described in this
-document. In particular, and without limitation, these intellectual
-property rights may include one or more of the U.S. patents listed at
-http://www.sun.com/patents and one or more additional patents or
-pending patent applications in the U.S. and in other countries.
-
-U.S. Government Rights - Commercial software. Government users are
-subject to the Sun Microsystems, Inc. standard license agreement and
-applicable provisions of the FAR and its supplements.
-
-Use is subject to license terms.
-
-This distribution may include materials developed by third parties.
-
-Parts of the product may be derived from Berkeley BSD systems,
-licensed from the University of California. UNIX is a registered
-trademark in the U.S. and in other countries, exclusively licensed
-through X/Open Company, Ltd.
-
-Sun, Sun Microsystems, the Sun logo, Java, Solaris, Java 3D, the 100%
-Pure Java logo, the Duke logo and the Java Coffee Cup logo are
-trademarks or registered trademarks of Sun Microsystems, Inc. in the
-U.S. and other countries.
-
-This product is covered and controlled by U.S. Export Control laws and
-may be subject to the export or import laws in other countries.
-Nuclear, missile, chemical biological weapons or nuclear maritime end
-uses or end users, whether direct or indirect, are strictly
-prohibited. Export or reexport to countries subject to U.S. embargo or
-to entities identified on U.S. export exclusion lists, including, but
-not limited to, the denied persons and specially designated nationals
-lists is strictly prohibited.
-
-Copyright 1996-2008 Sun Microsystems, Inc., 4150 Network Circle, Santa
-Clara, California 95054, Etats-Unis. Tous droits réservés.
-
-Sun Microsystems, Inc. détient les droits de propriété intellectuels
-relatifs à la technologie incorporée dans le produit qui est décrit
-dans ce document. En particulier, et ce sans limitation, ces droits de
-propriété intellectuelle peuvent inclure un ou plus des brevets
-américains listés à l'adresse http://www.sun.com/patents et un ou les
-brevets supplémentaires ou les applications de brevet en attente aux
-Etats - Unis et dans les autres pays.
-
-L'utilisation est soumise aux termes de la Licence.
-
-Cette distribution peut comprendre des composants développés par des
-tierces parties.
-
-Des parties de ce produit pourront être dérivées des systèmes Berkeley
-BSD licenciés par l'Université de Californie. UNIX est une marque
-déposée aux Etats-Unis et dans d'autres pays et licenciée
-exclusivement par X/Open Company, Ltd.
-
-Sun, Sun Microsystems, le logo Sun, Java, Solaris, Java 3D, le logo
-100% Pure Java, le logo Duke et le logo Java Coffee Cup sont des
-marques de fabrique ou des marques déposées de Sun Microsystems,
-Inc. aux Etats-Unis et dans d'autres pays.
-
-Ce produit est soumis à la législation américaine en matière de
-contrôle des exportations et peut être soumis à la règlementation en
-vigueur dans d'autres pays dans le domaine des exportations et
-importations. Les utilisations, ou utilisateurs finaux, pour des armes
-nucléaires,des missiles, des armes biologiques et chimiques ou du
-nucléaire maritime, directement ou indirectement, sont strictement
-interdites. Les exportations ou réexportations vers les pays sous
-embargo américain, ou vers des entités figurant sur les listes
-d'exclusion d'exportation américaines, y compris, mais de manière non
-exhaustive, la liste de personnes qui font objet d'un ordre de ne pas
-participer, d'une façon directe ou indirecte, aux exportations des
-produits ou des services qui sont régis par la législation américaine
-en matière de contrôle des exportations et la liste de ressortissants
-spécifiquement désignés, sont rigoureusement interdites.
diff --git a/src/main/resources_old/LICENSE.txt b/src/main/resources_old/LICENSE.txt
deleted file mode 100644
index c5b3f6484467af7d7f6519f9dd29c9b178a2ac4a..0000000000000000000000000000000000000000
--- a/src/main/resources_old/LICENSE.txt
+++ /dev/null
@@ -1,346 +0,0 @@
-The GNU General Public License (GPL)
-
-Version 2, June 1991
-
-Copyright (C) 1989, 1991 Free Software Foundation, Inc.
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
-
-Everyone is permitted to copy and distribute verbatim copies of this license
-document, but changing it is not allowed.
-
-Preamble
-
-The licenses for most software are designed to take away your freedom to share
-and change it. By contrast, the GNU General Public License is intended to
-guarantee your freedom to share and change free software--to make sure the
-software is free for all its users. This General Public License applies to
-most of the Free Software Foundation's software and to any other program whose
-authors commit to using it. (Some other Free Software Foundation software is
-covered by the GNU Library General Public License instead.) You can apply it to
-your programs, too.
-
-When we speak of free software, we are referring to freedom, not price. Our
-General Public Licenses are designed to make sure that you have the freedom to
-distribute copies of free software (and charge for this service if you wish),
-that you receive source code or can get it if you want it, that you can change
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-follow.
-
-TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
-
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- Yoyodyne, Inc., hereby disclaims all copyright interest in the program
- 'Gnomovision' (which makes passes at compilers) written by James Hacker.
-
- signature of Ty Coon, 1 April 1989
-
- Ty Coon, President of Vice
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-This General Public License does not permit incorporating your program into
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-library. If this is what you want to do, use the GNU Library General Public
-License instead of this License.
-
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-"CLASSPATH" EXCEPTION TO THE GPL
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diff --git a/src/main/resources_old/icon.png b/src/main/resources_old/icon.png
deleted file mode 100644
index c5c1b6cbbe46e902e0f664e4c82d655cd222d5be..0000000000000000000000000000000000000000
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diff --git a/src/main/resources_old/javax/vecmath/AxisAngle4d.class b/src/main/resources_old/javax/vecmath/AxisAngle4d.class
deleted file mode 100644
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diff --git a/src/main/resources_old/javax/vecmath/AxisAngle4f.class b/src/main/resources_old/javax/vecmath/AxisAngle4f.class
deleted file mode 100644
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diff --git a/src/main/resources_old/javax/vecmath/Color3b.class b/src/main/resources_old/javax/vecmath/Color3b.class
deleted file mode 100644
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diff --git a/src/main/resources_old/javax/vecmath/Color3f.class b/src/main/resources_old/javax/vecmath/Color3f.class
deleted file mode 100644
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diff --git a/src/main/resources_old/javax/vecmath/Color4b.class b/src/main/resources_old/javax/vecmath/Color4b.class
deleted file mode 100644
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diff --git a/src/main/resources_old/javax/vecmath/Color4f.class b/src/main/resources_old/javax/vecmath/Color4f.class
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diff --git a/src/main/resources_old/javax/vecmath/ExceptionStrings.properties b/src/main/resources_old/javax/vecmath/ExceptionStrings.properties
deleted file mode 100644
index ca56746ce81ad312e71dad9de438f893033f360a..0000000000000000000000000000000000000000
--- a/src/main/resources_old/javax/vecmath/ExceptionStrings.properties
+++ /dev/null
@@ -1,86 +0,0 @@
-Matrix3d0=Matrix3d setElement
-Matrix3d1=Matrix3d getElement
-Matrix3d2=Matrix3d getRow
-Matrix3d4=Matrix3d getColumn
-Matrix3d6=Matrix3d setRow
-Matrix3d9=Matrix3d setColumn
-Matrix3d12=cannot invert matrix
-Matrix3d13=Logic error: imax < 0
-Matrix3f0=Matrix3f setElement
-Matrix3f1=Matrix3d getRow
-Matrix3f3=Matrix3d getColumn
-Matrix3f5=Matrix3f getElement
-Matrix3f6=Matrix3f setRow
-Matrix3f9=Matrix3f setColumn
-Matrix3f12=cannot invert matrix
-Matrix3f13=Logic error: imax < 0
-Matrix4d0=Matrix4d setElement
-Matrix4d1=Matrix4d getElement
-Matrix4d2=Matrix4d getRow
-Matrix4d3=Matrix4d getColumn
-Matrix4d4=Matrix4d setRow
-Matrix4d7=Matrix4d setColumn
-Matrix4d10=cannot invert matrix
-Matrix4d11=Logic error: imax < 0
-Matrix4f0=Matrix4f setElement
-Matrix4f1=Matrix4f getElement
-Matrix4f2=Matrix4f getRow
-Matrix4f4=Matrix4f getColumn
-Matrix4f6=Matrix4f setRow
-Matrix4f9=Matrix4f setColumn
-Matrix4f12=cannot invert matrix
-Matrix4f13=Logic error: imax < 0
-GMatrix0=GMatrix.mul:array dimension mismatch
-GMatrix1=GMatrix.mul(GMatrix, GMatrix) dimension mismatch
-GMatrix2=GMatrix.mul(GVector, GVector): matrix does not have enough rows
-GMatrix3=GMatrix.mul(GVector, GVector): matrix does not have enough columns
-GMatrix4=GMatrix.add(GMatrix): row dimension mismatch
-GMatrix5=GMatrix.add(GMatrix): column dimension mismatch
-GMatrix6=GMatrix.add(GMatrix, GMatrix): row dimension mismatch
-GMatrix7=GMatrix.add(GMatrix, GMatrix): column dimension mismatch
-GMatrix8=GMatrix.add(GMatrix): input matrices dimensions do not match this matrix dimensions
-GMatrix9=GMatrix.sub(GMatrix): row dimension mismatch
-GMatrix10=GMatrix.sub(GMatrix, GMatrix): row dimension mismatch
-GMatrix11=GMatrix.sub(GMatrix, GMatrix): column dimension mismatch
-GMatrix12=GMatrix.sub(GMatrix, GMatrix): input matrix dimensions do not match dimensions for this matrix
-GMatrix13=GMatrix.negate(GMatrix, GMatrix): input matrix dimensions do not match dimensions for this matrix
-GMatrix14=GMatrix.mulTransposeBoth matrix dimension mismatch
-GMatrix15=GMatrix.mulTransposeRight matrix dimension mismatch
-GMatrix16=GMatrix.mulTransposeLeft matrix dimension mismatch
-GMatrix17=GMatrix.transpose(GMatrix) mismatch in matrix dimensions
-GMatrix18=GMatrix.SVD: dimension mismatch with V matrix
-GMatrix19=cannot perform LU decomposition on a non square matrix
-GMatrix20=row permutation must be same dimension as matrix
-GMatrix21=cannot invert matrix
-GMatrix22=cannot invert non square matrix
-GMatrix24=Logic error: imax < 0
-GMatrix25=GMatrix.SVD: dimension mismatch with U matrix
-GMatrix26=GMatrix.SVD: dimension mismatch with W matrix
-GMatrix27=LU must have same dimensions as this matrix
-GMatrix28=GMatrix.sub(GMatrix): column dimension mismatch
-GVector0=GVector.normalize( GVector) input vector and this vector lengths not matched
-GVector1=GVector.scale(double, GVector) input vector and this vector lengths not matched
-GVector2=GVector.scaleAdd(GVector, GVector) input vector dimensions not matched
-GVector3=GVector.scaleAdd(GVector, GVector) input vectors and this vector dimensions not matched
-GVector4=GVector.add(GVector) input vectors and this vector dimensions not matched
-GVector5=GVector.add(GVector, GVector) input vector dimensions not matched
-GVector6=GVector.add(GVector, GVector) input vectors and this vector dimensions not matched
-GVector7=GVector.sub(GVector) input vector and this vector dimensions not matched
-GVector8=GVector.sub(GVector, GVector) input vector dimensions not matched
-GVector9=GVector.sub(GMatrix, GVector) input vectors and this vector dimensions not matched
-GVector10=GVector.mul(GMatrix, GVector) matrix and vector dimensions not matched
-GVector11=GVector.mul(GMatrix, GVector) matrix this vector dimensions not matched
-GVector12=GVector.mul(GVector, GMatrix) matrix and vector dimensions not matched
-GVector13=GVector.mul(GVector, GMatrix) matrix this vector dimensions not matched
-GVector14=GVector.dot(GVector) input vector and this vector have different sizes
-GVector15=matrix dimensions are not compatible
-GVector16=b vector does not match matrix dimension
-GVector17=GVector.interpolate(GVector, GVector, float) input vectors have different lengths
-GVector18=GVector.interpolate(GVector, GVector, float) input vectors and this vector have different lengths
-GVector19=GVector.interpolate(GVector, float) input vector and this vector have different lengths
-GVector20=GVector.interpolate(GVector, GVector, double) input vectors have different lengths
-GVector21=GVector.interpolate(GVector, GVector, double) input vectors and this vector have different lengths
-GVector22=GVector.interpolate(GVector, double) input vectors and this vector have different lengths
-GVector23=matrix dimensions are not compatible
-GVector24=permutation vector does not match matrix dimension
-GVector25=LUDBackSolve non square matrix
diff --git a/src/main/resources_old/javax/vecmath/GMatrix.class b/src/main/resources_old/javax/vecmath/GMatrix.class
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diff --git a/src/main/resources_old/javax/vecmath/GVector.class b/src/main/resources_old/javax/vecmath/GVector.class
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diff --git a/src/main/resources_old/javax/vecmath/Matrix3d.class b/src/main/resources_old/javax/vecmath/Matrix3d.class
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diff --git a/src/main/resources_old/javax/vecmath/Matrix3f.class b/src/main/resources_old/javax/vecmath/Matrix3f.class
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diff --git a/src/main/resources_old/javax/vecmath/Matrix4d.class b/src/main/resources_old/javax/vecmath/Matrix4d.class
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diff --git a/src/main/resources_old/javax/vecmath/MismatchedSizeException.class b/src/main/resources_old/javax/vecmath/MismatchedSizeException.class
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diff --git a/src/main/resources_old/javax/vecmath/Point2d.class b/src/main/resources_old/javax/vecmath/Point2d.class
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