diff --git a/pom.xml b/pom.xml
index 6e46d76d04fe60ac74714dd297bc737c6f66683e..2e57140723bb7d9f26472f1d0c4f5452a7615ded 100644
--- a/pom.xml
+++ b/pom.xml
@@ -1,19 +1,19 @@
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
- xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
- xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+ xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<!-- Inherited Icy Parent POM -->
<parent>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>parent-pom-plugin</artifactId>
- <version>1.0.3</version>
+ <version>1.0.6</version>
</parent>
<!-- Project Information -->
<artifactId>mice-profiler-tracker</artifactId>
- <version>7.1.2</version>
+ <version>7.1.3</version>
<packaging>jar</packaging>
@@ -60,6 +60,19 @@
<!-- Project build configuration -->
<build>
+ <plugins>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-javadoc-plugin</artifactId>
+ <configuration>
+ <!-- disable javadoc errors for substance (too many errors
+ and we don't care really) -->
+ <additionalOptions>
+ <additionalOption>-Xdoclint:none</additionalOption>
+ </additionalOptions>
+ </configuration>
+ </plugin>
+ </plugins>
</build>
<!-- List of project's dependencies -->
diff --git a/src/main/java/plugins/fab/MiceProfiler/MiceProfilerLabelAnalyser.java b/src/main/java/plugins/fab/MiceProfiler/MiceProfilerLabelAnalyser.java
index 0e835643b68dcc01f8ef07ba3d8e1b03f4cb6a46..cfea292485d842b927c2cc0e0ac0335b81a6537f 100644
--- a/src/main/java/plugins/fab/MiceProfiler/MiceProfilerLabelAnalyser.java
+++ b/src/main/java/plugins/fab/MiceProfiler/MiceProfilerLabelAnalyser.java
@@ -18,19 +18,6 @@
*/
package plugins.fab.MiceProfiler;
-import icy.file.xls.XlsManager;
-import icy.gui.dialog.ActionDialog;
-import icy.gui.dialog.SaveDialog;
-import icy.gui.frame.IcyFrame;
-import icy.gui.util.GuiUtil;
-import icy.main.Icy;
-import icy.plugin.abstract_.Plugin;
-import icy.plugin.interface_.PluginImageAnalysis;
-import icy.swimmingPool.SwimmingObject;
-import icy.swimmingPool.SwimmingPoolEvent;
-import icy.swimmingPool.SwimmingPoolListener;
-import icy.type.point.Point3D;
-
import java.awt.BasicStroke;
import java.awt.BorderLayout;
import java.awt.Color;
@@ -56,9 +43,6 @@ import javax.swing.JRadioButton;
import javax.swing.JScrollPane;
import javax.swing.JTextField;
-import jmapps.ui.MessageDialog;
-import jxl.format.Colour;
-
import org.jfree.chart.ChartFactory;
import org.jfree.chart.ChartPanel;
import org.jfree.chart.JFreeChart;
@@ -69,1613 +53,1596 @@ import org.jfree.data.xy.XYSeries;
import org.jfree.data.xy.XYSeriesCollection;
import org.jfree.data.xy.YIntervalSeries;
import org.jfree.data.xy.YIntervalSeriesCollection;
-import org.jfree.ui.RectangleInsets;
-import plugins.kernel.roi.roi3d.ROI3DArea;
+import icy.file.xls.XlsManager;
+import icy.gui.dialog.ActionDialog;
+import icy.gui.dialog.SaveDialog;
+import icy.gui.frame.IcyFrame;
+import icy.gui.util.GuiUtil;
+import icy.main.Icy;
+import icy.plugin.abstract_.Plugin;
+import icy.plugin.interface_.PluginBundled;
+import icy.plugin.interface_.PluginImageAnalysis;
+import icy.swimmingPool.SwimmingObject;
+import icy.swimmingPool.SwimmingPoolEvent;
+import icy.swimmingPool.SwimmingPoolListener;
+import jmapps.ui.MessageDialog;
+import jxl.format.Colour;
/**
* @author Fab
- *
- * Goal : extract graphs from animal pool.
- * Take its source from the swimming pool.
- * Can be multi instanced.
- *
+ * Goal : extract graphs from animal pool.
+ * Take its source from the swimming pool.
+ * Can be multi instanced.
*/
-public class MiceProfilerLabelAnalyser extends Plugin implements PluginImageAnalysis, SwimmingPoolListener , ActionListener {
-
- JPanel mainPanel = GuiUtil.generatePanel();
- IcyFrame icyFrame = GuiUtil.generateTitleFrame("Label Analyser", mainPanel, new Dimension(0,0), true, true ,true ,true );
-
- ArrayList<EventSelector> eventSelectorList = null;
- JFreeChart chart;
- XYSeriesCollection xyDataset = new XYSeriesCollection();
- YIntervalSeriesCollection yintervalseriescollection = new YIntervalSeriesCollection();
-
- JTextField binSizeTextField = new JTextField("150");
- JTextField fpsTextField = new JTextField("15");
- JTextField totalTimeTextField = new JTextField("7200");
- ArrayList<AnimalPoolSelector> animalList = new ArrayList<AnimalPoolSelector>();
- IcyFrame graphFrame = new IcyFrame("graph" , true , true, true , true );
- //JCheckBox displayLegendCheckBox = new JCheckBox("display Legend", false);
- JCheckBoxMenuItem displayLegendCheckBoxMenuItem = new JCheckBoxMenuItem("display Legend", true );
-
-
-
- //JButton extractDataToProbabilityGridButton = new JButton("Compute decision graph script");
- JMenuItem extractDataToProbabilityGridMenuItem = new JMenuItem("Compute decision graph script to console");
- JTextField extractDataToProbabilityTimeValue = new JTextField("150");
- //JButton extractCurrentDataGraphToExcelButton = new JButton("Export current graph to xls");
-
- JMenuItem extractCurrentDataGraphToExcelMenuItem = new JMenuItem("Export current graph to xls");
- JMenuItem extractCurrentDataGraphWithAllLabelDensityToExcelMenuItem = new JMenuItem("Export graphs to xls (one per label-density)");
- //JButton extractAllDataToGraphAndExcel = new JButton("Export all datas (in pools) to xls");
- JMenuItem extractAllDataToGraphAndExcelMenuItem = new JMenuItem("Export all datas (in pools) to xls");
-
- public MiceProfilerLabelAnalyser() {
-
- // CHECK IF ANIMAL ARE LOADED IN SWIMMING POOL. IF NOT RETURN.
-
- animalList.clear();
- ArrayList<SwimmingObject> liste = Icy.getMainInterface().getSwimmingPool().getObjects();
- for ( SwimmingObject so : liste )
- {
- if ( so.getObject() instanceof Animal )
- {
- animalList.add( new AnimalPoolSelector ( (Animal) so.getObject() ) );
- }
- }
-
- if ( animalList.size()==0 )
- {
- MessageDialog.createInfoDialog( null , "No animal loaded, please run VideoLabelMaker first." );
- return;
- }
-
- // END OF ANIMAL LOADED CHECK
-
- Icy.getMainInterface().getSwimmingPool().addListener( this );
-
- chart = ChartFactory.createXYLineChart(
- "",
- "t",
- "y",
- yintervalseriescollection,
- PlotOrientation.VERTICAL,
- true, // true ,
- false,
- false
- );
-
- XYPlot xyplot = (XYPlot)chart.getPlot();
- xyplot.setInsets(new org.jfree.chart.ui.RectangleInsets(5D, 5D, 5D, 20D));
- xyplot.setBackgroundPaint(Color.lightGray);
- xyplot.setAxisOffset(new org.jfree.chart.ui.RectangleInsets(5D, 5D, 5D, 5D));
- xyplot.setDomainGridlinePaint(Color.white);
- xyplot.setRangeGridlinePaint(Color.white);
- DeviationRenderer deviationrenderer = new DeviationRenderer(true, false);
- for ( int i=0; i<100 ; i++ )
- {
- deviationrenderer.setSeriesStroke(i, new BasicStroke(3F, 1, 1));
- deviationrenderer.setSeriesStroke(i+1, new BasicStroke(3F, 1, 1));
- deviationrenderer.setSeriesFillPaint(0, new Color(255, 200, 200));
- deviationrenderer.setSeriesFillPaint(1, new Color(200, 200, 255));
- deviationrenderer.setSeriesFillPaint(3, new Color(200, 255, 200));
- deviationrenderer.setSeriesFillPaint(2, new Color(255, 255, 200));
- }
- xyplot.setRenderer(deviationrenderer);
-
-
- refreshData();
-
- icyFrame.addToDesktopPane();
- icyFrame.pack();
- icyFrame.setSize( 800, 600 );
- icyFrame.center();
- icyFrame.toFront();
- icyFrame.setVisible( true );
-
- graphFrame.addToDesktopPane();
- // graphFrame.center();
- graphFrame.setVisible( true );
- icyFrame.toFront();
-
- extractCurrentDataGraphToExcelMenuItem.addActionListener( this );
- extractAllDataToGraphAndExcelMenuItem.addActionListener( this );
- //displayLegendCheckBoxMenuItem.addActionListener( this );
- extractDataToProbabilityGridMenuItem.addActionListener( this );
- extractCurrentDataGraphWithAllLabelDensityToExcelMenuItem.addActionListener( this );
-
- JMenuBar menuBar = new JMenuBar();
- JMenu menuExport = new JMenu("Export");
- menuExport.add( extractCurrentDataGraphToExcelMenuItem );
- menuExport.add( extractAllDataToGraphAndExcelMenuItem );
- menuExport.add( extractDataToProbabilityGridMenuItem );
- menuExport.add( extractCurrentDataGraphWithAllLabelDensityToExcelMenuItem );
- menuBar.add( menuExport );
-
-// JMenu menuGraph = new JMenu("Graph");
-// menuGraph.add( displayLegendCheckBoxMenuItem );
-// menuBar.add( menuGraph );
-
-
-
-
- icyFrame.setJMenuBar( menuBar );
-
- }
-
- /**
- * refresh graphs
- * @param file
- */
- void refreshGraph( boolean xlsExport, String file )
- {
-
- XlsManager xls=null;
- int cursorX = 0;
- int cursorY = 1;
-
-
- if ( xlsExport )
- {
- String saveFileName = file;
- if ( file== null )
- {
- saveFileName = SaveDialog.chooseFile("Export current graph to xls file", System.getProperty("user.home") ,"outputGraph.xls", ".xls");
- if ( saveFileName == null ) return;
- }
-
- try {
- xls = new XlsManager( new File( saveFileName ));
- xls.createNewPage("Mice profiler graph export");
-
- } catch (IOException e) {
-
- e.printStackTrace();
- }
- }
-
- int binSize = Integer.parseInt( binSizeTextField.getText() );
- int endFrame = Integer.parseInt( totalTimeTextField.getText() );
- float fps = Float.parseFloat( fpsTextField.getText() );
-
-
- xyDataset.removeAllSeries();
- yintervalseriescollection.removeAllSeries();
-
- // creation des series:
-
- // no pool
-
- for ( EventSelector eventSelector : eventSelectorList )
- {
-
- for ( AnimalPoolSelector animalSelector : animalList )
- {
-
- if ( animalSelector.noPool.isSelected() )
- {
-
- if ( animalSelector.enable.isSelected() )
- {
-
- if ( eventSelector.nbEventCheckBox.isSelected() )
- {
- EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList.get( eventSelector.eventNumber );
- String titreSerie = animalSelector.animal.animalName+" np Event Nb"+eventTimeLine.criteriaName;
- XYSeries seriesXY = new XYSeries( titreSerie );
-
- if ( xlsExport )
- {
- cursorX++;
- xls.setLabel( cursorX , 0, titreSerie );
- cursorY=1;
- }
-
- YIntervalSeries yintervalseries = new YIntervalSeries( animalSelector.animal.animalName+" np Event Nb"+eventTimeLine.criteriaName );
-
- for ( int t = 0 ; t<endFrame ; t+=binSize )
- {
- double value = eventTimeLine.getNbEvent( t, t+binSize -1);
- yintervalseries.add( t/fps , value , value , value );
-
- if ( xlsExport )
- {
- xls.setNumber( 0 , cursorY , t/fps ); // legende
- xls.setNumber( cursorX , cursorY , value ); // valeur
- cursorY++;
- }
-
- }
- yintervalseriescollection.addSeries( yintervalseries );
-
- }
-
- if ( eventSelector.lengthCheckBox.isSelected() )
- {
- EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList.get( eventSelector.eventNumber );
- XYSeries seriesXY = new XYSeries(animalSelector.animal.animalName+" np Event l"+eventTimeLine.criteriaName );
-
- String titreSerie = animalSelector.animal.animalName+" np Event l"+eventTimeLine.criteriaName;
- YIntervalSeries yintervalseries = new YIntervalSeries( titreSerie );
-
- if ( xlsExport )
- {
- cursorX++;
- xls.setLabel( cursorX , 0, titreSerie );
- cursorY=1;
- }
-
- for ( int t = 0 ; t<endFrame ; t+=binSize )
- {
- double value = eventTimeLine.getLengthEvent( t, t+binSize -1);
- yintervalseries.add( t/fps , value , value , value );
-
- if ( xlsExport )
- {
- xls.setNumber( 0 , cursorY , t/fps ); // legende
- xls.setNumber( cursorX , cursorY , value ); // valeur
- cursorY++;
- }
-
- }
- yintervalseriescollection.addSeries( yintervalseries );
-
- }
-
- // critere discret
- if ( eventSelector.displayDiscreteValueCheckBox.isSelected() )
- {
- EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList.get( eventSelector.eventNumber );
- XYSeries seriesXY = new XYSeries(animalSelector.animal.animalName+" dv Event "+eventTimeLine.criteriaName );
-
- String titreSerie = animalSelector.animal.animalName+" dv Event "+eventTimeLine.criteriaName;
-
- YIntervalSeries yintervalseries = new YIntervalSeries( titreSerie );
-
- if ( xlsExport )
- {
- cursorX++;
- xls.setLabel( cursorX , 0, titreSerie );
- cursorY=1;
- }
-
- for ( int t = 0 ; t<endFrame ; t+=binSize )
- {
-
- double value = eventTimeLine.getMeanValue( t, t+binSize -1);
- yintervalseries.add( t/fps , value , value , value );
-
- if ( xlsExport )
- {
- xls.setNumber( 0 , cursorY , t/fps ); // legende
- xls.setNumber( cursorX , cursorY , value ); // valeur
- cursorY++;
- }
-
- }
- yintervalseriescollection.addSeries( yintervalseries );
-
- }
-
- // critere density
- if ( eventSelector.densityCheckBox.isSelected() )
- {
-
- EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList.get( eventSelector.eventNumber );
- XYSeries seriesXY = new XYSeries(animalSelector.animal.animalName+" dv Density "+eventTimeLine.criteriaName );
-
- String titreSerie = animalSelector.animal.animalName+" dv Density "+eventTimeLine.criteriaName ;
-
- YIntervalSeries yintervalseries = new YIntervalSeries( titreSerie );
-
- if ( xlsExport )
- {
- cursorX++;
- xls.setLabel( cursorX , 0, titreSerie );
- cursorY=1;
- }
-
- for ( int t = 0 ; t<endFrame ; t+=binSize )
- {
-
- double value = eventTimeLine.getDensity( t, t+binSize -1);
-
- yintervalseries.add( t/fps , value , value , value );
-
- if ( xlsExport )
- {
- xls.setNumber( 0 , cursorY , t/fps ); // legende
- xls.setNumber( cursorX , cursorY , value ); // valeur
- cursorY++;
- }
-
- }
- yintervalseriescollection.addSeries( yintervalseries );
-
- }
-
- }
- }
- }
-
- }
-
- updateGraphSeriesForPool( Criteria.NB_EVENT , 1 , endFrame , binSize , xls , xlsExport );
- updateGraphSeriesForPool( Criteria.LENGTH_EVENT , 1 , endFrame , binSize , xls , xlsExport );
- updateGraphSeriesForPool( Criteria.DISCRETE_VALUE , 1 , endFrame , binSize , xls , xlsExport );
- updateGraphSeriesForPool( Criteria.DENSITY_VALUE , 1 , endFrame , binSize , xls , xlsExport );
- updateGraphSeriesForPool( Criteria.NB_EVENT , 2 , endFrame , binSize , xls , xlsExport );
- updateGraphSeriesForPool( Criteria.LENGTH_EVENT , 2 , endFrame , binSize , xls , xlsExport );
- updateGraphSeriesForPool( Criteria.DISCRETE_VALUE , 2 , endFrame , binSize , xls , xlsExport );
- updateGraphSeriesForPool( Criteria.DENSITY_VALUE , 2 , endFrame , binSize , xls , xlsExport );
-
- if ( xlsExport )
- {
- //System.out.println( "xls debug: " + xls.getExcelPage() );
- xls.SaveAndClose();
- }
-
- }
-
- enum Criteria {
- NB_EVENT, LENGTH_EVENT, DISCRETE_VALUE, DENSITY_VALUE
- }
-
- void updateGraphSeriesForPool( Criteria criteria, int pool , int endFrame , int binSize, XlsManager xls, boolean xlsExport )
- {
- int cursorX = 1;
- int cursorY = 0;
-
- float fps = Float.parseFloat( fpsTextField.getText() );
-
- boolean process = false;
- for ( AnimalPoolSelector animalSelector : animalList )
- {
- if (
- ( pool == 1 && animalSelector.pool1.isSelected() )
- ||
- ( pool == 2 && animalSelector.pool2.isSelected() )
- )
- {
- process = true;
- }
- }
-
- if ( !process ) return;
-
- for ( EventSelector eventSelector : eventSelectorList )
- {
- if (
- ( criteria == Criteria.NB_EVENT && eventSelector.nbEventCheckBox.isSelected() )
- ||
- ( criteria == Criteria.LENGTH_EVENT && eventSelector.lengthCheckBox.isSelected() )
- ||
- ( criteria == Criteria.DISCRETE_VALUE && eventSelector.displayDiscreteValueCheckBox.isSelected() )
- ||
- ( criteria == Criteria.DENSITY_VALUE && eventSelector.densityCheckBox.isSelected() )
- )
- {
-
- String chaine = "p" + pool +" " + criteria.toString();
- chaine+=animalList.get( 0 ).animal.eventTimeLineList.get( eventSelector.eventNumber ).criteriaName;
- XYSeries seriesXY = new XYSeries( chaine );
- YIntervalSeries yintervalseries = new YIntervalSeries( chaine );
-
- if ( xlsExport )
- {
- xls.createNewPage( chaine );
- cursorX = 1;
- }
-
- for ( int t = 0 ; t<endFrame ; t+=binSize )
- {
- if ( xlsExport )
- {
- xls.setLabel( cursorX, cursorY, ""+t+"-"+(t+binSize) );
- cursorY++;
- cursorY++;
-
- }
-
- //ROI3DArea r = new ROI3DArea( new Point3D.Double( 0,0,0 ) );
-
- ArrayList<Double> listResultat = new ArrayList<Double>();
-
- for ( AnimalPoolSelector animalSelector : animalList )
- {
-
- if (
- ( pool == 1 && animalSelector.pool1.isSelected() )
- ||
- ( pool == 2 && animalSelector.pool2.isSelected() )
- )
- {
-
- if ( animalSelector.enable.isSelected() )
- {
- EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList.get( eventSelector.eventNumber );
-
- if ( criteria == Criteria.NB_EVENT )
- {
- listResultat.add( eventTimeLine.getNbEvent( t, t+binSize -1) );
-
- if ( xlsExport )
- {
- xls.setNumber( cursorX , cursorY , eventTimeLine.getNbEvent( t, t+binSize -1) );
- cursorY++;
- }
-
- }
- if ( criteria == Criteria.LENGTH_EVENT )
- {
- listResultat.add( eventTimeLine.getLengthEvent( t, t+binSize -1) );
-
- if ( xlsExport )
- {
- xls.setNumber( cursorX , cursorY , eventTimeLine.getLengthEvent( t, t+binSize -1) );
- cursorY++;
- }
-
- }
-
- if ( criteria == Criteria.DISCRETE_VALUE )
- {
- listResultat.add( eventTimeLine.getMeanValue( t, t+binSize -1) );
-
- if ( xlsExport )
- {
- xls.setNumber( cursorX , cursorY , eventTimeLine.getMeanValue( t, t+binSize -1) );
- cursorY++;
- }
-
- }
- if ( criteria == Criteria.DENSITY_VALUE )
- {
- listResultat.add( eventTimeLine.getDensity( t, t+binSize -1) );
-
- if ( xlsExport )
- {
- xls.setNumber( cursorX , cursorY , eventTimeLine.getDensity( t, t+binSize -1) );
- cursorY++;
- }
-
-
- }
-
- }
- }
- }
-
- if ( listResultat.size() != 0 )
- {
- double[] resultatTab2 = new double[listResultat.size()];
- for ( int i = 0 ; i < listResultat.size() ; i++ )
- {
- resultatTab2[i] = listResultat.get( i );
- }
-
- double error = flanagan.analysis.Stat.standardDeviation( resultatTab2 );
- error = error / Math.sqrt( listResultat.size() -1 );
- double mean = flanagan.analysis.Stat.mean( resultatTab2 );
-
- yintervalseries.add( t/fps , mean , mean-(error) , mean+(error) );
-
- if ( xlsExport )
- {
- cursorY++;
- xls.setNumber( cursorX , cursorY, mean );
- }
-
- }else
- {
- yintervalseries.add( t/fps , 0,0,0 );
- }
-
- cursorX++;
- cursorY=0;
- }
-
- xyDataset.addSeries( seriesXY );
-
- yintervalseriescollection.addSeries( yintervalseries );
-
- }
- }
- }
-
- /**
- * Refresh Datas
- */
- private void refreshData() {
-
- mainPanel.removeAll();
-
- JPanel animalPoolListPanel = GuiUtil.generatePanel("Animal pool List");
- JPanel criteriaListPanel = GuiUtil.generatePanel("criteria List");
-
- ArrayList<SwimmingObject> liste = Icy.getMainInterface().getSwimmingPool().getObjects();
- animalList.clear();
-
- Animal animalToGetCriteria = null;
- for ( SwimmingObject so : liste )
- {
- if ( so.getObject() instanceof Animal )
- {
- animalList.add( new AnimalPoolSelector ( (Animal) so.getObject() ) );
- animalToGetCriteria = (Animal) so.getObject() ;
- }
- }
-
- if ( animalToGetCriteria == null ) // there is no more animal in pool
- {
- return;
- }
-
- for ( AnimalPoolSelector animalSelector : animalList )
- {
- animalPoolListPanel.add( animalSelector.panel );
- }
-
- mainPanel.add( GuiUtil.besidesPanel (
- new JLabel("Bin Size ( nb frames )") , binSizeTextField ,
- new JLabel("Total time to compute ( nb frames )") , totalTimeTextField
- ));
- //mainPanel.add( GuiUtil.besidesPanel ( displayLegendCheckBox , extractAllDataToGraphAndExcelMenuItem , extractDataToProbabilityGridButton ) );
- //mainPanel.add( GuiUtil.besidesPanel ( displayLegendCheckBox , extractDataToProbabilityGridMenuItem ) );
- //mainPanel.add( GuiUtil.besidesPanel ( displayLegendCheckBoxMenuItem ) );
-
- //mainPanel.add( GuiUtil.besidesPanel( new JLabel("time window forward:") , extractDataToProbabilityTimeValue , extractCurrentDataGraphToExcelMenuItem ) );
- mainPanel.add( GuiUtil.besidesPanel( new JLabel("time window forward:") , extractDataToProbabilityTimeValue ) );
- mainPanel.add( GuiUtil.besidesPanel( new JLabel("FPS:") , fpsTextField ) );
-
- eventSelectorList = new ArrayList<EventSelector>();
-
-
- for ( EventTimeLine et : animalToGetCriteria.eventTimeLineList )
- {
- EventSelector eventSelector = new EventSelector( animalToGetCriteria.eventTimeLineList.indexOf( et ), et );
- eventSelectorList.add( eventSelector );
-
- criteriaListPanel.add( eventSelector.panel );
- }
-
- JPanel parameterPanel = new JPanel( new BorderLayout() );
-
- JScrollPane animalPoolListScrollPane = new JScrollPane( animalPoolListPanel , JScrollPane.VERTICAL_SCROLLBAR_ALWAYS, JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS );
- JScrollPane criteriaListScrollPane = new JScrollPane( criteriaListPanel , JScrollPane.VERTICAL_SCROLLBAR_ALWAYS, JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS );
-
-
- parameterPanel.add( animalPoolListScrollPane , BorderLayout.WEST );
- parameterPanel.add( criteriaListScrollPane , BorderLayout.CENTER );
-
- mainPanel.add( parameterPanel ) ;
-
- graphFrame.getContentPane().add(
- new ChartPanel( chart , 700 , 200 , 700 , 200 , 700 , 700 , false , false, true , true , true, true) );
- graphFrame.pack();
-
- refreshGraph( false , "");
-
- mainPanel.updateUI();
-
- }
-
- @Override
- public void swimmingPoolChangeEvent(SwimmingPoolEvent swimmingPoolEvent) {
-
- refreshData();
-
- }
-
- @Override
- public void compute() {
-
- }
-
- class EventSelector implements ActionListener
- {
- JPanel panel = GuiUtil.generatePanelWithoutBorder();
- int eventNumber;
- JCheckBox nbEventCheckBox = new JCheckBox( "nb Event" );
- JCheckBox lengthCheckBox = new JCheckBox( "length" );
- JCheckBox densityCheckBox = new JCheckBox( "density" );
- JLabel criteriaLabel ;
- JCheckBox displayDiscreteValueCheckBox = new JCheckBox( "discrete Value" );
-
- public EventSelector( int eventNumber , EventTimeLine e )
- {
- this.eventNumber = eventNumber;
-
- int maxSizeString = e.criteriaName.length();
- if ( maxSizeString > 40 ) maxSizeString = 40;
-
- criteriaLabel = new JLabel( e.criteriaName.substring( 0 , maxSizeString ) );
- criteriaLabel.setToolTipText( e.criteriaName );
-
- if ( e.timeLineCategory == TimeLineCategory.USE_BOOLEAN_EVENT )
- {
- panel.add( GuiUtil.besidesPanel(
- criteriaLabel,
- densityCheckBox,
- nbEventCheckBox,
- lengthCheckBox
- ) );
- }
-
- if( e.timeLineCategory == TimeLineCategory.USE_DISCRETE_EVENT )
- {
- panel.add( GuiUtil.besidesPanel(
- criteriaLabel,
- displayDiscreteValueCheckBox
- ) );
- }
-
- densityCheckBox.addActionListener( this );
- nbEventCheckBox.addActionListener( this );
- lengthCheckBox.addActionListener( this );
- displayDiscreteValueCheckBox.addActionListener( this );
-
- }
-
- @Override
- public void actionPerformed(ActionEvent e) {
- refreshGraph( false , "");
- }
-
- }
-
- class AnimalPoolSelector implements ActionListener
- {
- JPanel panel = GuiUtil.generatePanelWithoutBorder();
- Animal animal;
-
- JCheckBox enable = new JCheckBox("Enable" , true );
- JRadioButton pool1 = new JRadioButton("Pool 1");
- JRadioButton pool2 = new JRadioButton("Pool 2");
- JRadioButton noPool = new JRadioButton("no pool",true);
-
- ButtonGroup poolGroup = new ButtonGroup();
- ButtonGroup carecterizationGroup = new ButtonGroup();
-
- public AnimalPoolSelector( Animal animal ) {
-
- this.animal = animal;
-
- enable.addActionListener( this );
- pool1.addActionListener( this );
- pool2.addActionListener( this );
- noPool.addActionListener( this );
-
-
- poolGroup.add( pool1 );
- poolGroup.add( pool2 );
- poolGroup.add( noPool );
-
- int maxSizeString = animal.animalName.length();
- if ( maxSizeString > 5 ) maxSizeString = 5;
-
- enable.setText( animal.animalName.substring( 0 , maxSizeString ) );
- enable.setToolTipText( animal.animalName );
-
- panel.add( GuiUtil.besidesPanel( new Component[]{
-
- enable,
- pool1, pool2, noPool }
-
-
- ) );
-
- }
-
- @Override
- public void actionPerformed(ActionEvent e) {
- refreshGraph( false , "");
- }
- }
-
- @Override
- public void actionPerformed(ActionEvent e) {
-
- refreshGraph( false ,"" );
-
- if ( e.getSource() == extractCurrentDataGraphToExcelMenuItem )
- {
- extractCurrentDataGraphToExcel();
- }
-
- if ( e.getSource() == extractAllDataToGraphAndExcelMenuItem )
- {
- exportAllData();
- }
-
- if ( e.getSource() == extractDataToProbabilityGridMenuItem )
- {
- extractDataToProbabilityGrid2();
- }
-
- if ( e.getSource() == extractCurrentDataGraphWithAllLabelDensityToExcelMenuItem )
- {
- extractDataGraphWithAllLabelDensityToExcel();
- }
-
- }
-
- /**
- * Extract all the data by selecting all the different criteria, one by one.
- */
- private void extractDataGraphWithAllLabelDensityToExcel()
- {
- String saveFileName = SaveDialog.chooseFile( "Save xls file", "", "Mice Profiler - " );
-
- if (saveFileName==null) return;
-
- for ( EventSelector eventSelector : eventSelectorList )
- {
- for ( EventSelector eventSelector2 : eventSelectorList ) // clear all check boxes
- {
- eventSelector2.densityCheckBox.setSelected( false );
- }
-
- eventSelector.densityCheckBox.setSelected( true );
-
- String eventLabel = eventSelector.criteriaLabel.getText().replaceAll("[^a-zA-Z0-9\\._]+", "_");
- String fileName = saveFileName + " - " + eventLabel +".xls";
-
- refreshGraph( true , fileName );
- }
-
- }
-
-
- private void extractCurrentDataGraphToExcel() {
-
- refreshGraph( true , null );
-
- }
-
- /**
- * Extraction des grilles de proba de passage d'un etat a un autre sous feuille excel.
- *
- * Nouvelle version 2 (nov 2010)
- */
- private void extractDataToProbabilityGrid2() {
-
- System.out.println("export version nov 2010");
-
- int timeWindow = Integer.parseInt( extractDataToProbabilityTimeValue.getText() );
- int offsetY = 3;
- int offsetX = 1;
-
- //XlsManager xls =null;
-// try {
-// xls = new XlsManager( System.getProperty("user.home") + "\\output "+(timeWindow-15)+"-"+timeWindow+"f.xls");
-// } catch (IOException e) {
-//
-// e.printStackTrace();
-// }
-
-// JTextField startTextField = new JTextField("0");
-
- ActionDialog actionDialog = new ActionDialog( "Select parameters for tansition graph." );
- JPanel mainPanel = new JPanel();
- actionDialog.setPreferredSize( new Dimension( 400, 400 ) );
- actionDialog.getMainPanel().add( new JScrollPane( mainPanel ) );
- //actionDialog.getMainPanel().setLayout( new BoxLayout( actionDialog.getMainPanel() , BoxLayout.PAGE_AXIS ));
- mainPanel.setLayout( new BoxLayout( mainPanel , BoxLayout.PAGE_AXIS ));
- animalList.get( 0 ).animal.eventTimeLineList.size();
-
- JTextField minProbability = new JTextField("0.3");
- mainPanel.add( GuiUtil.createLineBoxPanel( new JLabel("Min probability: "), minProbability ) );
- JTextField fpsTextField = new JTextField("15");
- mainPanel.add( GuiUtil.createLineBoxPanel( new JLabel("FPS: "), fpsTextField ) );
- JTextField maxNumberOfCandidateTextField = new JTextField("4");
- mainPanel.add( GuiUtil.createLineBoxPanel( new JLabel("Max number of ancestor: "), maxNumberOfCandidateTextField ) );
- JCheckBox forceLocation = new JCheckBox("Force the location of the event in the graph (circular rendering)" , false );
- mainPanel.add( GuiUtil.createLineBoxPanel(forceLocation ) );
-
- HashMap<Integer, JCheckBox> selectedEventHashMap = new HashMap<Integer, JCheckBox>();
-
- for ( EventTimeLine event : animalList.get( 0 ).animal.eventTimeLineList )
- {
- JCheckBox booleanField = new JCheckBox( event.criteriaName , true );
- //actionDialog.getMainPanel().add( GuiUtil.createLineBoxPanel( booleanField ) );
- mainPanel.add( GuiUtil.createLineBoxPanel( booleanField ) );
- int index = animalList.get( 0 ).animal.eventTimeLineList.indexOf( event );
- selectedEventHashMap.put( index , booleanField );
- if ( index == 1 ) booleanField.setSelected( false );
- if ( index >= 7 && index <=10 ) booleanField.setSelected( false );
- if ( index >= 13 && index <=20 ) booleanField.setSelected( false );
- if ( index >= 27 ) booleanField.setSelected( false );
-
- }
- actionDialog.pack();
- actionDialog.setLocationRelativeTo( null );
- actionDialog.setVisible( true );
-
- if ( actionDialog.isCanceled() ) return;
-
- float fps = Float.parseFloat( fpsTextField.getText() );
- int MAX_NUMBER_OF_CANDIDATE = Integer.parseInt( maxNumberOfCandidateTextField.getText() );
-
- System.out.println("WARNING:");
- System.out.println("This output consider all the loaded animal in the Label Analyser as coming from the same pool.");
- System.out.println("i.e. only 1 pool is considered.");
- System.out.println("version Jan 2013. p>0.1 instead of p>0.3");
-
- int nbTotalDeCritere = animalList.get( 0 ).animal.eventTimeLineList.size();
-
- float poolProba0_4[][][] = new float[animalList.size()][nbTotalDeCritere][nbTotalDeCritere];
- float poolProba4_8[][][] = new float[animalList.size()][nbTotalDeCritere][nbTotalDeCritere];
-
- for ( int animalNumber=0 ; animalNumber < animalList.size() ; animalNumber++ )
- {
- Animal animal = animalList.get( animalNumber ).animal;
- //xls.createNewPage( animal.animalName );
-
- //xls.setLabel( 0 , 0 , "se lit: event de la colonne x a une proba p d etre precede par ligne y");
- //xls.setLabel( 0 , 1 , "timeforward(frames):" + (timeWindow-15) + " to " + timeWindow );
- //xls.setLabel( 0 , 2 , "animal:" + animal.animalName );
-
- //int FENETRE_RECHERCHE_FRAME = 15*3;
- int FENETRE_RECHERCHE_FRAME = (int) (fps*3);
-
- for ( int eventNumberSource = 0 ; eventNumberSource < animal.eventTimeLineList.size() ; eventNumberSource++ ) // parcours la liste des events.
- {
-
- //xls.setNumber( 2*eventNumberSource+1 + offsetX, 0 + offsetY , eventNumberSource + 1 );
-
- for ( int eventNumberTarget = 0 ; eventNumberTarget < animal.eventTimeLineList.size() ; eventNumberTarget++ ) // parcours la liste des events.
- {
-
- //xls.setNumber( 0 + offsetX , eventNumberTarget+1 + offsetY , eventNumberTarget + 1 );
- //xls.setLabel( 0 , eventNumberTarget+1 + offsetY , animalList.get( 0 ).animal.eventTimeLineList.get( eventNumberTarget ).criteriaName );
-
- EventTimeLine eventTimeLineSource = animal.eventTimeLineList.get( eventNumberSource );
- EventTimeLine eventTimeLineTarget = animal.eventTimeLineList.get( eventNumberTarget );
-
- float nbEventSource04=0;
- float nbEventTarget04=0;
- float nbPassageSourceTargetOk04 = 0;
- float nbPassageTargetSourceOk04 = 0;
-
- for ( EventCriteria eventCriteriaSource : eventTimeLineSource.eventList )
- {
- if( eventCriteriaSource.startFrame > 3600 ) continue;
- nbEventSource04++;
-
- for ( EventCriteria eventCriteriaTarget : eventTimeLineTarget.eventList )
- {
- if( eventCriteriaTarget.startFrame > 3600 ) continue;
-
- if (
- eventCriteriaTarget.startFrame >= eventCriteriaSource.endFrame
- &&
- eventCriteriaTarget.startFrame <= eventCriteriaSource.endFrame + FENETRE_RECHERCHE_FRAME
- )
- {
- nbPassageSourceTargetOk04 ++;
- break;
- }
- }
- }
-
- for ( EventCriteria eventCriteriaTarget : eventTimeLineTarget.eventList )
- {
- if( eventCriteriaTarget.startFrame > 3600 ) continue;
- nbEventTarget04++;
-
- for ( EventCriteria eventCriteriaSource : eventTimeLineSource.eventList )
- {
- if( eventCriteriaSource.startFrame > 3600 ) continue;
- if (
- eventCriteriaTarget.startFrame >= eventCriteriaSource.endFrame
- &&
- eventCriteriaTarget.startFrame <= eventCriteriaSource.endFrame + FENETRE_RECHERCHE_FRAME
- )
- {
- nbPassageTargetSourceOk04 ++;
- break;
- }
- }
- }
-
- float probaStoT04 = nbPassageSourceTargetOk04 / nbEventSource04;
- float probaTtoS04 = nbPassageTargetSourceOk04 / nbEventTarget04;
- float proba2Way04 = probaStoT04 * probaTtoS04 ;
-
- float nbEventSource48=0;
- float nbEventTarget48=0;
- float nbPassageSourceTargetOk48 = 0;
- float nbPassageTargetSourceOk48 = 0;
-
- for ( EventCriteria eventCriteriaSource : eventTimeLineSource.eventList )
- {
- if( eventCriteriaSource.startFrame < 3600 ) continue;
- nbEventSource48++;
-
- for ( EventCriteria eventCriteriaTarget : eventTimeLineTarget.eventList )
- {
- if( eventCriteriaTarget.startFrame < 3600 ) continue;
-
- if (
- eventCriteriaTarget.startFrame >= eventCriteriaSource.endFrame
- &&
- eventCriteriaTarget.startFrame <= eventCriteriaSource.endFrame + FENETRE_RECHERCHE_FRAME
- )
- {
- nbPassageSourceTargetOk48 ++;
- break;
- }
- }
- }
-
- for ( EventCriteria eventCriteriaTarget : eventTimeLineTarget.eventList )
- {
- if( eventCriteriaTarget.startFrame < 3600 ) continue;
- nbEventTarget48++;
-
- for ( EventCriteria eventCriteriaSource : eventTimeLineSource.eventList )
- {
- if( eventCriteriaSource.startFrame < 3600 ) continue;
- if (
- eventCriteriaTarget.startFrame >= eventCriteriaSource.endFrame
- &&
- eventCriteriaTarget.startFrame <= eventCriteriaSource.endFrame + FENETRE_RECHERCHE_FRAME
- )
- {
- nbPassageTargetSourceOk48 ++;
- break;
- }
- }
- }
-
- float probaStoT48 = nbPassageSourceTargetOk48 / nbEventSource48;
- float probaTtoS48 = nbPassageTargetSourceOk48 / nbEventTarget48;
- float proba2Way48 = probaStoT48 * probaTtoS48 ;
-
- if( eventNumberSource!=9 && eventNumberSource!=10 && eventNumberTarget!=9 && eventNumberTarget!=10 ) // enleve le speed
- {
- poolProba0_4[animalNumber][eventNumberSource][eventNumberTarget] = proba2Way04;
- poolProba4_8[animalNumber][eventNumberSource][eventNumberTarget] = proba2Way48;
- }
-
- }
- }
-
- }
-
- float meanAnimalProba0_4[][] = new float[nbTotalDeCritere][nbTotalDeCritere];
- float stddevAnimalProba0_4[][] = new float[nbTotalDeCritere][nbTotalDeCritere];
- float meanAnimalProba4_8[][] = new float[nbTotalDeCritere][nbTotalDeCritere];
- float stddevAnimalProba4_8[][] = new float[nbTotalDeCritere][nbTotalDeCritere];
-
- for ( int eventNumberSource = 0 ; eventNumberSource < nbTotalDeCritere ; eventNumberSource++ ) // parcours la liste des events.
- {
- for ( int eventNumberTarget = 0 ; eventNumberTarget < nbTotalDeCritere ; eventNumberTarget++ ) // parcours la liste des events.
- {
- float[] tabProba = new float[animalList.size()];
- for ( int animalNumber=0 ; animalNumber < animalList.size() ; animalNumber++ )
- {
- tabProba[animalNumber]=poolProba0_4[animalNumber][eventNumberSource][eventNumberTarget];
- meanAnimalProba0_4[eventNumberSource][eventNumberTarget]+= poolProba0_4[animalNumber][eventNumberSource][eventNumberTarget] ;
-
- }
- meanAnimalProba0_4[eventNumberSource][eventNumberTarget]/=animalList.size();
- stddevAnimalProba0_4[eventNumberSource][eventNumberTarget] = flanagan.analysis.Stat.standardDeviation( tabProba ); ;
- }
- }
-
-
- for ( int eventNumberSource = 0 ; eventNumberSource < nbTotalDeCritere ; eventNumberSource++ ) // parcours la liste des events.
- {
- for ( int eventNumberTarget = 0 ; eventNumberTarget < nbTotalDeCritere ; eventNumberTarget++ ) // parcours la liste des events.
- {
- float[] tabProba = new float[animalList.size()];
- for ( int animalNumber=0 ; animalNumber < animalList.size() ; animalNumber++ )
- {
- tabProba[animalNumber]=poolProba4_8[animalNumber][eventNumberSource][eventNumberTarget];
- meanAnimalProba4_8[eventNumberSource][eventNumberTarget]+= poolProba4_8[animalNumber][eventNumberSource][eventNumberTarget] ;
-
- }
- meanAnimalProba4_8[eventNumberSource][eventNumberTarget]/=animalList.size();
- stddevAnimalProba4_8[eventNumberSource][eventNumberTarget] = flanagan.analysis.Stat.standardDeviation( tabProba ); ;
- }
- }
-
- ArrayList<ArrayList<EventResult>> resultatParSource0_4 = new ArrayList<ArrayList<EventResult>>();
- ArrayList<ArrayList<EventResult>> resultatParSource4_8 = new ArrayList<ArrayList<EventResult>>();
-
-// int MAX_NUMBER_OF_CANDIDATE = 4; // was 4
-
- {
- for ( int nbEventTarget = 0 ; nbEventTarget < nbTotalDeCritere ; nbEventTarget++ )
- {
- ArrayList<EventResult> eventResultList = new ArrayList<EventResult>();
- for ( int nbEventSource = 0 ; nbEventSource < nbTotalDeCritere ; nbEventSource++ )
- {
- JCheckBox eTarget = selectedEventHashMap.get( nbEventTarget );
- JCheckBox eSource = selectedEventHashMap.get( nbEventSource );
- if ( !eTarget.isSelected() || !eSource.isSelected() ) continue;
-
- /*
- if ( nbEventTarget == 1 || nbEventSource == 1 ) continue;
- if ( nbEventTarget == 7 || nbEventSource == 7 ) continue;
- if ( nbEventTarget == 8 || nbEventSource == 8 ) continue;
- if ( nbEventTarget == 9 || nbEventSource == 9 ) continue;
- if ( nbEventTarget == 10 || nbEventSource == 10 ) continue;
- if ( nbEventTarget == 13 || nbEventSource == 13 ) continue;
- if ( nbEventTarget == 14 || nbEventSource == 14 ) continue;
- if ( nbEventTarget == 15 || nbEventSource == 15 ) continue;
- if ( nbEventTarget == 16 || nbEventSource == 16 ) continue;
- if ( nbEventTarget == 17 || nbEventSource == 17 ) continue;
- if ( nbEventTarget == 18 || nbEventSource == 18 ) continue;
- if ( nbEventTarget == 19 || nbEventSource == 19 ) continue;
- if ( nbEventTarget == 20 || nbEventSource == 20 ) continue;
- if ( nbEventTarget >= 27 || nbEventSource >= 27 ) continue;
- */
-
- float probaProposee = meanAnimalProba0_4[nbEventSource][nbEventTarget];
- float stddevPropose = stddevAnimalProba0_4[nbEventSource][nbEventTarget];
-
- ArrayList<EventResult> eventResultListClone = (ArrayList<EventResult>) eventResultList.clone();
-
- for ( EventResult resultClient : eventResultListClone )
- {
- if ( resultClient.proba < probaProposee )
- {
- eventResultList.remove( resultClient );
- break;
- }
- }
-
- if ( eventResultList.size() < MAX_NUMBER_OF_CANDIDATE )
- {
- EventResult result = new EventResult( nbEventSource , nbEventTarget , probaProposee , stddevPropose, "red");
- eventResultList.add( result );
- }
-
- }
- resultatParSource0_4.add( eventResultList );
-
- }
- }
-
-
- {
-
- for ( int nbEventTarget = 0 ; nbEventTarget < nbTotalDeCritere ; nbEventTarget++ )
- {
- ArrayList<EventResult> eventResultList = new ArrayList<EventResult>();
- for ( int nbEventSource = 0 ; nbEventSource < nbTotalDeCritere ; nbEventSource++ )
- {
- JCheckBox eTarget = selectedEventHashMap.get( nbEventTarget );
- JCheckBox eSource = selectedEventHashMap.get( nbEventSource );
- if ( !eTarget.isSelected() || !eSource.isSelected() ) continue;
-//
-// if ( nbEventTarget == 1 || nbEventSource == 1 ) continue;
-// if ( nbEventTarget == 7 || nbEventSource == 7 ) continue;
-// if ( nbEventTarget == 8 || nbEventSource == 8 ) continue;
-// if ( nbEventTarget == 9 || nbEventSource == 9 ) continue;
-// if ( nbEventTarget == 10 || nbEventSource == 10 ) continue;
-// if ( nbEventTarget == 13 || nbEventSource == 13 ) continue;
-// if ( nbEventTarget == 14 || nbEventSource == 14 ) continue;
-// if ( nbEventTarget == 15 || nbEventSource == 15 ) continue;
-// if ( nbEventTarget == 16 || nbEventSource == 16 ) continue;
-// if ( nbEventTarget == 17 || nbEventSource == 17 ) continue;
-// if ( nbEventTarget == 18 || nbEventSource == 18 ) continue;
-// if ( nbEventTarget == 19 || nbEventSource == 19 ) continue;
-// if ( nbEventTarget == 20 || nbEventSource == 20 ) continue;
-// if ( nbEventTarget >= 27 || nbEventSource >= 27 ) continue;
-
-
- float probaProposee = meanAnimalProba4_8[nbEventSource][nbEventTarget];
- float stddevPropose = stddevAnimalProba4_8[nbEventSource][nbEventTarget];
-
- ArrayList<EventResult> eventResultListClone = (ArrayList<EventResult>) eventResultList.clone();
-
- for ( EventResult resultClient : eventResultListClone )
- {
- if ( resultClient.proba < probaProposee )
- {
- eventResultList.remove( resultClient );
- break;
- }
- }
-
- if ( eventResultList.size() < MAX_NUMBER_OF_CANDIDATE )
- {
- EventResult result = new EventResult( nbEventSource , nbEventTarget , probaProposee , stddevPropose , "green");
- eventResultList.add( result );
- }
-
- }
- resultatParSource4_8.add( eventResultList );
-
- }
- }
-
- // GRAPH:
-
- boolean FORCE_LOCATION = forceLocation.isSelected();
-
-
- System.out.println("Put the following script in GraphViz:");
- if ( FORCE_LOCATION )
- {
- System.out.println("/* @command = neato **/");
- }
- System.out.println("digraph {");
- System.out.println("splines=true;");
-
- // set the location of each available event
-
- if ( FORCE_LOCATION )
- {
- double x = 0;
- double y = 0;
- double angle = 0;
-
- for ( int eventIndex = 0 ; eventIndex < nbTotalDeCritere ; eventIndex++ )
- {
- JCheckBox eventBox = selectedEventHashMap.get( eventIndex );
- if ( !eventBox.isSelected() ) continue;
-//
-// if( eventIndex == 1 ) continue;
-// if( eventIndex == 7 ) continue;
-// if( eventIndex == 8 ) continue;
-// if( eventIndex == 9 ) continue;
-// if( eventIndex == 10 ) continue;
-// if( eventIndex == 13 ) continue;
-// if( eventIndex == 14 ) continue;
-// if( eventIndex == 15 ) continue;
-// if( eventIndex == 16 ) continue;
-// if( eventIndex == 17 ) continue;
-// if( eventIndex == 18 ) continue;
-// if( eventIndex == 19 ) continue;
-// if( eventIndex == 20 ) continue;
-// if( eventIndex >= 27 ) continue;
-
- x = 300+ Math.cos( angle )*300;
- y = 300+ Math.sin( angle )*300;
-
- String criteriaName = animalList.get( 0 ).animal.eventTimeLineList.get( eventIndex ).criteriaName;
- criteriaName = keepFirstChars( criteriaName );
-
- String result="\""+criteriaName+"\"";
- result+="[";
- result+= " pos=\""+x+","+y+"!"+"\" " ;
- result+= " shape=\"box\" " ;
- result+= " width=\"2\" " ;
- result+="]";
-
- System.out.println( result );
-
-
- angle+=( Math.PI * 2d )/ 14d ;
-
-
- // x+=200;
- // if ( x > 100 )
- // {
- // y+=100;
- // x=0;
- // }
-
- }
-
- }
-
-
-
-
- //animalList.get( 0 ).animal.eventTimeLineList.get( eventSource ).criteriaName
-
- // create graph
-
- for ( int sourceList = 0 ; sourceList < nbTotalDeCritere ; sourceList++ )
- {
- ArrayList<EventResult> eventResultList0_4 = resultatParSource0_4.get( sourceList );
- ArrayList<EventResult> eventResultList4_8 = resultatParSource4_8.get( sourceList );
-
- ArrayList<EventResult> finalResult = createCommonList( eventResultList0_4 , eventResultList4_8 );
-
- for ( EventResult eventResult : finalResult )
- {
- if ( eventResult.enable )
- {
- if ( eventResult.proba >= 0.1f ) // was 0.3f
- {
- System.out.println(eventResult);
- }else
- {
-
- }
- }
- }
-
- }
-
- System.out.println("}");
-
-
-// xls.SaveAndClose();
-
- }
-
- ArrayList<EventResult> createCommonList(ArrayList<EventResult> eventResultList0_4, ArrayList<EventResult> eventResultList4_8)
- {
- ArrayList<EventResult> finalResult = new ArrayList<EventResult>();
- for ( EventResult eventResult0_4 : eventResultList0_4 )
- {
- finalResult.add( eventResult0_4 );
- }
- for ( EventResult eventResult4_8 : eventResultList4_8 )
- {
- finalResult.add( eventResult4_8 );
- }
-
- for ( EventResult eventResultA : finalResult )
- {
- for ( EventResult eventResultB : finalResult )
- {
- if (
- eventResultA!=eventResultB
- &&
- eventResultA.enable
- &&
- eventResultB.enable
- &&
- eventResultA.eventSource == eventResultB.eventSource
- &&
- eventResultA.eventTarget == eventResultB.eventTarget
- &&
- checkIfProbaOverlap( eventResultA , eventResultB )
- )
- {
- eventResultA.proba = ( eventResultA.proba + eventResultB.proba ) /2f ;
- eventResultB.enable = false;
- eventResultA.color="black";
- }
-
-
- }
- }
-
- return finalResult;
- }
-
- private boolean checkIfProbaOverlap( EventResult eventResultA, EventResult eventResultB )
- {
- float sigma = 1f;
-
- float borneMinA = eventResultA.proba-eventResultA.stddev*sigma;
- float borneMaxA = eventResultA.proba+eventResultA.stddev*sigma;
-
- float borneMinB = eventResultB.proba-eventResultB.stddev*sigma;
- float borneMaxB = eventResultB.proba+eventResultB.stddev*sigma;
-
- if ( borneMinA > borneMinB && borneMinA < borneMaxB ) return true;
- if ( borneMaxA > borneMinB && borneMaxA < borneMaxB ) return true;
-
- return false;
- }
-
- class ProbaResult {
- public ProbaResult( float proba, float stddev, int startFrame )
- {
- this.stddev = stddev;
- this.proba = proba;
- this.startFrame = startFrame;
- }
- float stddev;
- float proba;
- int startFrame;
- }
-
- class EventResult
- {
- boolean enable = true;
- public EventResult( int eventSource, int eventTarget , float proba , float stddev, String color) {
- this.eventSource = eventSource;
- this.eventTarget = eventTarget;
- this.stddev = stddev;
- this.proba = proba;
- this.color = color;
- }
- float stddev;
- int eventSource;
- int eventTarget;
- float proba;
- String color;
- @Override
- public String toString() {
-
- String result = "";
- result+="\""+keepFirstChars(animalList.get( 0 ).animal.eventTimeLineList.get( eventSource ).criteriaName)+"\"";
- result+="->";
- result+="\""+keepFirstChars(animalList.get( 0 ).animal.eventTimeLineList.get( eventTarget ).criteriaName)+"\"";
- result+=" ";
- result+="[ ";
- result+="color=\""+color+"\"";
- result+=" style=\"setlinewidth("+ proba*5 +")\"]";
- result+=";";
-
- return result;
- }
-
- /**
- * Just provide the name of events. Without link.
- * @return
- */
- public String getEvents()
- {
- String result ="";
- result+="\""+keepFirstChars(animalList.get( 0 ).animal.eventTimeLineList.get( eventSource ).criteriaName)+"\"";
- result+=";";
- result+="\""+keepFirstChars(animalList.get( 0 ).animal.eventTimeLineList.get( eventTarget ).criteriaName)+"\"";
- result+=";";
- return result;
- }
-
- }
-
- public static String keepFirstChars( String s )
- {
- int MAXSIZE = 20;
- if ( s.length() > MAXSIZE ) s=(String) s.substring( 0, MAXSIZE );
- return s;
- }
-
- void exportAllData()
- {
- System.out.println("export all data in pool to excel.");
-
- // export pool 1
-
- //String saveFileName = SaveDialog.chooseFile("Export all data to xls file", System.getProperty("user.home") ,"output.xls", ".xls");
-
- JTextField startTextField = new JTextField("0");
- JTextField endTextField = new JTextField("8");
-
- ActionDialog actionDialog = new ActionDialog( "Select range (in minutes)" );
- actionDialog.getMainPanel().setLayout( new BoxLayout( actionDialog.getMainPanel() , BoxLayout.PAGE_AXIS ));
- actionDialog.getMainPanel().add( GuiUtil.createLineBoxPanel( new JLabel("start (minutes)") , startTextField ) );
- actionDialog.getMainPanel().add( GuiUtil.createLineBoxPanel( new JLabel("end (minutes)") , endTextField ) );
- actionDialog.pack();
- actionDialog.setLocationRelativeTo( null );
- actionDialog.setVisible( true );
-
- if ( actionDialog.isCanceled() ) return;
-
- float startMinute = Float.parseFloat( startTextField.getText() );
- float endMinute = Float.parseFloat( endTextField.getText() );
-
- String saveFileName = SaveDialog.chooseFile( "Save xls file", "", "Mice Profiler - all data", ".xls" );
-
- if (saveFileName==null) return;
- XlsManager xls = null;
-
- try {
-
- xls = new XlsManager( saveFileName );
- xls.createNewPage("Data in pool");
-
- } catch (IOException e) {
-
- e.printStackTrace();
- }
-
- xls.createNewPage("Results");
-
- int cursorY = 0;
-
- for ( EventSelector eventSelector : eventSelectorList )
- {
- String eventTitle = animalList.get( 0 ).animal.eventTimeLineList.get( eventSelector.eventNumber ).criteriaName;
-
- xls.setLabel( 0, cursorY, "Event #"+eventSelector.eventNumber , Colour.YELLOW );
- cursorY++;
- xls.setLabel( 0, cursorY, eventTitle );
- cursorY+=2;
-
- cursorY = exportXLSPool( 1 , eventSelector , cursorY , xls , startMinute , endMinute );
- cursorY+=3;
- cursorY = exportXLSPool( 2 , eventSelector , cursorY , xls , startMinute , endMinute );
- cursorY+=4;
- }
-
- xls.SaveAndClose();
-
- }
-
-
- int exportXLSPool( int pool , EventSelector eventSelector , int cursorY , XlsManager xls, float startMinute, float endMinute )
- {
- float halfMinute = ( endMinute + startMinute ) / 2f;
-
- xls.setLabel( 0, cursorY, "p"+pool );
- //xls.setLabel( 1, cursorY, "nb e 0-4" );
- xls.setLabel( 1, cursorY, "nb event from "+startMinute+" to " + halfMinute + " minutes" );
- //xls.setLabel( 2, cursorY, "nb e 4-8" );
- xls.setLabel( 2, cursorY, "nb event from "+halfMinute+" to " + endMinute + " minutes" );
- //xls.setLabel( 3, cursorY, "nb e 0-8" );
- xls.setLabel( 3, cursorY, "nb event from "+startMinute+" to " + endMinute + " minutes" );
-
- //xls.setLabel( 4, cursorY, "l e 0-4" );
- xls.setLabel( 4, cursorY, "length of event from "+startMinute+" to " + halfMinute + " minutes" );
- //xls.setLabel( 5, cursorY, "l e 4-8" );
- xls.setLabel( 5, cursorY, "length of event from "+halfMinute+" to " + endMinute + " minutes" );
- //xls.setLabel( 6, cursorY, "l e 0-8" );
- xls.setLabel( 6, cursorY, "length of event from "+startMinute+" to " + endMinute + " minutes" );
-
- float fps = Float.parseFloat( fpsTextField.getText() );
-
- cursorY++;
-
- for ( AnimalPoolSelector animalSelector : animalList )
- {
- if ( pool==1 && animalSelector.pool1.isSelected()
- ||
- pool == 2 && animalSelector.pool2.isSelected()
- )
- {
- if ( animalSelector.enable.isSelected() )
- {
- xls.setLabel( 0 , cursorY, animalSelector.animal.animalName );
-
- Animal animal = animalSelector.animal;
- EventTimeLine eventTimeLine = animal.eventTimeLineList.get( eventSelector.eventNumber );
-
- //boolean debug = false;
-
- // nb event e 0-4 le
- //if ( debug ) System.out.println("0-4");
- {
- int nb = 0;
- int length = 0;
-
- //int maxTime = (int) (4*60*fps);
- int maxTime = (int) (halfMinute*60*fps);
- int minTime = (int) (startMinute*60*fps);
-
- for ( EventCriteria event : eventTimeLine.eventList )
- {
- if ( event.startFrame < maxTime && event.startFrame >= minTime )
- {
- nb++;
- length+=event.getLength();
-// if ( debug )
-// {
-// System.out.println( eventTimeLine.eventList.indexOf( event ) + ">" + event.getLength() );
-// }
- }
- }
- xls.setNumber( 1 , cursorY, nb );
- xls.setNumber( 4 , cursorY, length );
-// if ( debug )
-// {
-// System.out.println( "nb event"+nb );
-// System.out.println( "length event"+length );
-// }
-
-
- }
-
- // nb event e 4-8 le
- //if ( debug ) System.out.println("4-8");
- {
- int nb = 0;
- int length = 0;
-
- //int minTime = (int)(4d*60d*fps);
- int minTime = (int)(halfMinute*60d*fps);
- int maxTime = (int)(endMinute*60*fps);
- for ( EventCriteria event : eventTimeLine.eventList )
- {
- if ( event.startFrame < maxTime && event.startFrame > minTime )
- {
- nb++;
- length+=event.getLength();
-// if ( debug )
-// {
-// System.out.println( eventTimeLine.eventList.indexOf( event ) + ">" + event.getLength() );
-// }
- }
- }
- xls.setNumber( 2 , cursorY, nb );
- xls.setNumber( 5 , cursorY, length );
-// if ( debug )
-// {
-// System.out.println( "nb event"+nb );
-// System.out.println( "length event"+length );
-// }
-
-
- }
-
- // nb event e 0-8 le
-// if ( debug ) System.out.println("0-8");
- {
- int nb = 0;
- int length = 0;
- int minTime = (int)(startMinute*60d*fps);
- //int maxTime = (int) (8*60*fps);
- int maxTime = (int) (endMinute*60*fps);
- for ( EventCriteria event : eventTimeLine.eventList )
- {
- if ( event.startFrame < maxTime && event.startFrame > minTime )
- {
- nb++;
- length+=event.getLength();
-// if ( debug )
-// {
-// System.out.println( eventTimeLine.eventList.indexOf( event ) + ">" + event.getLength() );
-// }
- }
- }
- xls.setNumber( 3 , cursorY, nb );
- xls.setNumber( 6 , cursorY, length );
-// if ( debug )
-// {
-// System.out.println( "nb event"+nb );
-// System.out.println( "length event"+length );
-// }
+public class MiceProfilerLabelAnalyser extends Plugin
+ implements PluginImageAnalysis, PluginBundled, SwimmingPoolListener, ActionListener
+{
+
+ JPanel mainPanel = GuiUtil.generatePanel();
+ IcyFrame icyFrame = GuiUtil.generateTitleFrame("Label Analyser", mainPanel, new Dimension(0, 0), true, true, true,
+ true);
+
+ ArrayList<EventSelector> eventSelectorList = null;
+ JFreeChart chart;
+ XYSeriesCollection xyDataset = new XYSeriesCollection();
+ YIntervalSeriesCollection yintervalseriescollection = new YIntervalSeriesCollection();
+
+ JTextField binSizeTextField = new JTextField("150");
+ JTextField fpsTextField = new JTextField("15");
+ JTextField totalTimeTextField = new JTextField("7200");
+ ArrayList<AnimalPoolSelector> animalList = new ArrayList<AnimalPoolSelector>();
+ IcyFrame graphFrame = new IcyFrame("graph", true, true, true, true);
+ // JCheckBox displayLegendCheckBox = new JCheckBox("display Legend", false);
+ JCheckBoxMenuItem displayLegendCheckBoxMenuItem = new JCheckBoxMenuItem("display Legend", true);
+
+ // JButton extractDataToProbabilityGridButton = new JButton("Compute decision graph script");
+ JMenuItem extractDataToProbabilityGridMenuItem = new JMenuItem("Compute decision graph script to console");
+ JTextField extractDataToProbabilityTimeValue = new JTextField("150");
+ // JButton extractCurrentDataGraphToExcelButton = new JButton("Export current graph to xls");
+
+ JMenuItem extractCurrentDataGraphToExcelMenuItem = new JMenuItem("Export current graph to xls");
+ JMenuItem extractCurrentDataGraphWithAllLabelDensityToExcelMenuItem = new JMenuItem(
+ "Export graphs to xls (one per label-density)");
+ // JButton extractAllDataToGraphAndExcel = new JButton("Export all datas (in pools) to xls");
+ JMenuItem extractAllDataToGraphAndExcelMenuItem = new JMenuItem("Export all datas (in pools) to xls");
+
+ public MiceProfilerLabelAnalyser()
+ {
+
+ // CHECK IF ANIMAL ARE LOADED IN SWIMMING POOL. IF NOT RETURN.
+
+ animalList.clear();
+ ArrayList<SwimmingObject> liste = Icy.getMainInterface().getSwimmingPool().getObjects();
+ for (SwimmingObject so : liste)
+ {
+ if (so.getObject() instanceof Animal)
+ {
+ animalList.add(new AnimalPoolSelector((Animal) so.getObject()));
+ }
+ }
+
+ if (animalList.size() == 0)
+ {
+ MessageDialog.createInfoDialog(null, "No animal loaded, please run VideoLabelMaker first.");
+ return;
+ }
+
+ // END OF ANIMAL LOADED CHECK
+
+ Icy.getMainInterface().getSwimmingPool().addListener(this);
+
+ chart = ChartFactory.createXYLineChart("", "t", "y", yintervalseriescollection, PlotOrientation.VERTICAL, true, // true ,
+ false, false);
+
+ XYPlot xyplot = (XYPlot) chart.getPlot();
+ xyplot.setInsets(new org.jfree.chart.ui.RectangleInsets(5D, 5D, 5D, 20D));
+ xyplot.setBackgroundPaint(Color.lightGray);
+ xyplot.setAxisOffset(new org.jfree.chart.ui.RectangleInsets(5D, 5D, 5D, 5D));
+ xyplot.setDomainGridlinePaint(Color.white);
+ xyplot.setRangeGridlinePaint(Color.white);
+ DeviationRenderer deviationrenderer = new DeviationRenderer(true, false);
+ for (int i = 0; i < 100; i++)
+ {
+ deviationrenderer.setSeriesStroke(i, new BasicStroke(3F, 1, 1));
+ deviationrenderer.setSeriesStroke(i + 1, new BasicStroke(3F, 1, 1));
+ deviationrenderer.setSeriesFillPaint(0, new Color(255, 200, 200));
+ deviationrenderer.setSeriesFillPaint(1, new Color(200, 200, 255));
+ deviationrenderer.setSeriesFillPaint(3, new Color(200, 255, 200));
+ deviationrenderer.setSeriesFillPaint(2, new Color(255, 255, 200));
+ }
+ xyplot.setRenderer(deviationrenderer);
+
+ refreshData();
+
+ icyFrame.addToDesktopPane();
+ icyFrame.pack();
+ icyFrame.setSize(800, 600);
+ icyFrame.center();
+ icyFrame.toFront();
+ icyFrame.setVisible(true);
+
+ graphFrame.addToDesktopPane();
+ // graphFrame.center();
+ graphFrame.setVisible(true);
+ icyFrame.toFront();
+
+ extractCurrentDataGraphToExcelMenuItem.addActionListener(this);
+ extractAllDataToGraphAndExcelMenuItem.addActionListener(this);
+ // displayLegendCheckBoxMenuItem.addActionListener( this );
+ extractDataToProbabilityGridMenuItem.addActionListener(this);
+ extractCurrentDataGraphWithAllLabelDensityToExcelMenuItem.addActionListener(this);
+
+ JMenuBar menuBar = new JMenuBar();
+ JMenu menuExport = new JMenu("Export");
+ menuExport.add(extractCurrentDataGraphToExcelMenuItem);
+ menuExport.add(extractAllDataToGraphAndExcelMenuItem);
+ menuExport.add(extractDataToProbabilityGridMenuItem);
+ menuExport.add(extractCurrentDataGraphWithAllLabelDensityToExcelMenuItem);
+ menuBar.add(menuExport);
+
+ // JMenu menuGraph = new JMenu("Graph");
+ // menuGraph.add( displayLegendCheckBoxMenuItem );
+ // menuBar.add( menuGraph );
+
+ icyFrame.setJMenuBar(menuBar);
+
+ }
+
+ /**
+ * refresh graphs
+ *
+ * @param file
+ */
+ void refreshGraph(boolean xlsExport, String file)
+ {
+
+ XlsManager xls = null;
+ int cursorX = 0;
+ int cursorY = 1;
+
+ if (xlsExport)
+ {
+ String saveFileName = file;
+ if (file == null)
+ {
+ saveFileName = SaveDialog.chooseFile("Export current graph to xls file",
+ System.getProperty("user.home"), "outputGraph.xls", ".xls");
+ if (saveFileName == null)
+ return;
+ }
+
+ try
+ {
+ xls = new XlsManager(new File(saveFileName));
+ xls.createNewPage("Mice profiler graph export");
+
+ }
+ catch (IOException e)
+ {
+
+ e.printStackTrace();
+ }
+ }
+
+ int binSize = Integer.parseInt(binSizeTextField.getText());
+ int endFrame = Integer.parseInt(totalTimeTextField.getText());
+ float fps = Float.parseFloat(fpsTextField.getText());
+
+ xyDataset.removeAllSeries();
+ yintervalseriescollection.removeAllSeries();
+
+ // creation des series:
+
+ // no pool
+
+ for (EventSelector eventSelector : eventSelectorList)
+ {
+
+ for (AnimalPoolSelector animalSelector : animalList)
+ {
+
+ if (animalSelector.noPool.isSelected())
+ {
+
+ if (animalSelector.enable.isSelected())
+ {
+
+ if (eventSelector.nbEventCheckBox.isSelected())
+ {
+ EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList
+ .get(eventSelector.eventNumber);
+ String titreSerie = animalSelector.animal.animalName + " np Event Nb"
+ + eventTimeLine.criteriaName;
+ XYSeries seriesXY = new XYSeries(titreSerie);
+
+ if (xlsExport)
+ {
+ cursorX++;
+ xls.setLabel(cursorX, 0, titreSerie);
+ cursorY = 1;
+ }
+
+ YIntervalSeries yintervalseries = new YIntervalSeries(
+ animalSelector.animal.animalName + " np Event Nb" + eventTimeLine.criteriaName);
+
+ for (int t = 0; t < endFrame; t += binSize)
+ {
+ double value = eventTimeLine.getNbEvent(t, t + binSize - 1);
+ yintervalseries.add(t / fps, value, value, value);
+
+ if (xlsExport)
+ {
+ xls.setNumber(0, cursorY, t / fps); // legende
+ xls.setNumber(cursorX, cursorY, value); // valeur
+ cursorY++;
+ }
+
+ }
+ yintervalseriescollection.addSeries(yintervalseries);
+
+ }
+
+ if (eventSelector.lengthCheckBox.isSelected())
+ {
+ EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList
+ .get(eventSelector.eventNumber);
+ XYSeries seriesXY = new XYSeries(
+ animalSelector.animal.animalName + " np Event l" + eventTimeLine.criteriaName);
+
+ String titreSerie = animalSelector.animal.animalName + " np Event l"
+ + eventTimeLine.criteriaName;
+ YIntervalSeries yintervalseries = new YIntervalSeries(titreSerie);
+
+ if (xlsExport)
+ {
+ cursorX++;
+ xls.setLabel(cursorX, 0, titreSerie);
+ cursorY = 1;
+ }
+
+ for (int t = 0; t < endFrame; t += binSize)
+ {
+ double value = eventTimeLine.getLengthEvent(t, t + binSize - 1);
+ yintervalseries.add(t / fps, value, value, value);
+
+ if (xlsExport)
+ {
+ xls.setNumber(0, cursorY, t / fps); // legende
+ xls.setNumber(cursorX, cursorY, value); // valeur
+ cursorY++;
+ }
+
+ }
+ yintervalseriescollection.addSeries(yintervalseries);
+
+ }
+
+ // critere discret
+ if (eventSelector.displayDiscreteValueCheckBox.isSelected())
+ {
+ EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList
+ .get(eventSelector.eventNumber);
+ XYSeries seriesXY = new XYSeries(
+ animalSelector.animal.animalName + " dv Event " + eventTimeLine.criteriaName);
+
+ String titreSerie = animalSelector.animal.animalName + " dv Event "
+ + eventTimeLine.criteriaName;
+
+ YIntervalSeries yintervalseries = new YIntervalSeries(titreSerie);
+
+ if (xlsExport)
+ {
+ cursorX++;
+ xls.setLabel(cursorX, 0, titreSerie);
+ cursorY = 1;
+ }
+
+ for (int t = 0; t < endFrame; t += binSize)
+ {
+
+ double value = eventTimeLine.getMeanValue(t, t + binSize - 1);
+ yintervalseries.add(t / fps, value, value, value);
+
+ if (xlsExport)
+ {
+ xls.setNumber(0, cursorY, t / fps); // legende
+ xls.setNumber(cursorX, cursorY, value); // valeur
+ cursorY++;
+ }
+
+ }
+ yintervalseriescollection.addSeries(yintervalseries);
+
+ }
+
+ // critere density
+ if (eventSelector.densityCheckBox.isSelected())
+ {
+
+ EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList
+ .get(eventSelector.eventNumber);
+ XYSeries seriesXY = new XYSeries(
+ animalSelector.animal.animalName + " dv Density " + eventTimeLine.criteriaName);
+
+ String titreSerie = animalSelector.animal.animalName + " dv Density "
+ + eventTimeLine.criteriaName;
+
+ YIntervalSeries yintervalseries = new YIntervalSeries(titreSerie);
+
+ if (xlsExport)
+ {
+ cursorX++;
+ xls.setLabel(cursorX, 0, titreSerie);
+ cursorY = 1;
+ }
+
+ for (int t = 0; t < endFrame; t += binSize)
+ {
+
+ double value = eventTimeLine.getDensity(t, t + binSize - 1);
+
+ yintervalseries.add(t / fps, value, value, value);
+
+ if (xlsExport)
+ {
+ xls.setNumber(0, cursorY, t / fps); // legende
+ xls.setNumber(cursorX, cursorY, value); // valeur
+ cursorY++;
+ }
+
+ }
+ yintervalseriescollection.addSeries(yintervalseries);
+
+ }
+
+ }
+ }
+ }
+
+ }
+
+ updateGraphSeriesForPool(Criteria.NB_EVENT, 1, endFrame, binSize, xls, xlsExport);
+ updateGraphSeriesForPool(Criteria.LENGTH_EVENT, 1, endFrame, binSize, xls, xlsExport);
+ updateGraphSeriesForPool(Criteria.DISCRETE_VALUE, 1, endFrame, binSize, xls, xlsExport);
+ updateGraphSeriesForPool(Criteria.DENSITY_VALUE, 1, endFrame, binSize, xls, xlsExport);
+ updateGraphSeriesForPool(Criteria.NB_EVENT, 2, endFrame, binSize, xls, xlsExport);
+ updateGraphSeriesForPool(Criteria.LENGTH_EVENT, 2, endFrame, binSize, xls, xlsExport);
+ updateGraphSeriesForPool(Criteria.DISCRETE_VALUE, 2, endFrame, binSize, xls, xlsExport);
+ updateGraphSeriesForPool(Criteria.DENSITY_VALUE, 2, endFrame, binSize, xls, xlsExport);
+
+ if (xlsExport)
+ {
+ // System.out.println( "xls debug: " + xls.getExcelPage() );
+ xls.SaveAndClose();
+ }
+
+ }
+
+ enum Criteria
+ {
+ NB_EVENT, LENGTH_EVENT, DISCRETE_VALUE, DENSITY_VALUE
+ }
+
+ void updateGraphSeriesForPool(Criteria criteria, int pool, int endFrame, int binSize, XlsManager xls,
+ boolean xlsExport)
+ {
+ int cursorX = 1;
+ int cursorY = 0;
+
+ float fps = Float.parseFloat(fpsTextField.getText());
+
+ boolean process = false;
+ for (AnimalPoolSelector animalSelector : animalList)
+ {
+ if ((pool == 1 && animalSelector.pool1.isSelected()) || (pool == 2 && animalSelector.pool2.isSelected()))
+ {
+ process = true;
+ }
+ }
+
+ if (!process)
+ return;
+
+ for (EventSelector eventSelector : eventSelectorList)
+ {
+ if ((criteria == Criteria.NB_EVENT && eventSelector.nbEventCheckBox.isSelected())
+ || (criteria == Criteria.LENGTH_EVENT && eventSelector.lengthCheckBox.isSelected())
+ || (criteria == Criteria.DISCRETE_VALUE && eventSelector.displayDiscreteValueCheckBox.isSelected())
+ || (criteria == Criteria.DENSITY_VALUE && eventSelector.densityCheckBox.isSelected()))
+ {
+
+ String chaine = "p" + pool + " " + criteria.toString();
+ chaine += animalList.get(0).animal.eventTimeLineList.get(eventSelector.eventNumber).criteriaName;
+ XYSeries seriesXY = new XYSeries(chaine);
+ YIntervalSeries yintervalseries = new YIntervalSeries(chaine);
+
+ if (xlsExport)
+ {
+ xls.createNewPage(chaine);
+ cursorX = 1;
+ }
+
+ for (int t = 0; t < endFrame; t += binSize)
+ {
+ if (xlsExport)
+ {
+ xls.setLabel(cursorX, cursorY, "" + t + "-" + (t + binSize));
+ cursorY++;
+ cursorY++;
+
+ }
+
+ // ROI3DArea r = new ROI3DArea( new Point3D.Double( 0,0,0 ) );
+
+ ArrayList<Double> listResultat = new ArrayList<Double>();
+
+ for (AnimalPoolSelector animalSelector : animalList)
+ {
+
+ if ((pool == 1 && animalSelector.pool1.isSelected())
+ || (pool == 2 && animalSelector.pool2.isSelected()))
+ {
+
+ if (animalSelector.enable.isSelected())
+ {
+ EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList
+ .get(eventSelector.eventNumber);
+
+ if (criteria == Criteria.NB_EVENT)
+ {
+ listResultat.add(eventTimeLine.getNbEvent(t, t + binSize - 1));
+
+ if (xlsExport)
+ {
+ xls.setNumber(cursorX, cursorY, eventTimeLine.getNbEvent(t, t + binSize - 1));
+ cursorY++;
+ }
+
+ }
+ if (criteria == Criteria.LENGTH_EVENT)
+ {
+ listResultat.add(eventTimeLine.getLengthEvent(t, t + binSize - 1));
+
+ if (xlsExport)
+ {
+ xls.setNumber(cursorX, cursorY,
+ eventTimeLine.getLengthEvent(t, t + binSize - 1));
+ cursorY++;
+ }
+
+ }
+
+ if (criteria == Criteria.DISCRETE_VALUE)
+ {
+ listResultat.add(eventTimeLine.getMeanValue(t, t + binSize - 1));
+
+ if (xlsExport)
+ {
+ xls.setNumber(cursorX, cursorY, eventTimeLine.getMeanValue(t, t + binSize - 1));
+ cursorY++;
+ }
+
+ }
+ if (criteria == Criteria.DENSITY_VALUE)
+ {
+ listResultat.add(eventTimeLine.getDensity(t, t + binSize - 1));
+
+ if (xlsExport)
+ {
+ xls.setNumber(cursorX, cursorY, eventTimeLine.getDensity(t, t + binSize - 1));
+ cursorY++;
+ }
+
+ }
+
+ }
+ }
+ }
+
+ if (listResultat.size() != 0)
+ {
+ double[] resultatTab2 = new double[listResultat.size()];
+ for (int i = 0; i < listResultat.size(); i++)
+ {
+ resultatTab2[i] = listResultat.get(i);
+ }
+
+ double error = flanagan.analysis.Stat.standardDeviation(resultatTab2);
+ error = error / Math.sqrt(listResultat.size() - 1);
+ double mean = flanagan.analysis.Stat.mean(resultatTab2);
+
+ yintervalseries.add(t / fps, mean, mean - (error), mean + (error));
+
+ if (xlsExport)
+ {
+ cursorY++;
+ xls.setNumber(cursorX, cursorY, mean);
+ }
+
+ }
+ else
+ {
+ yintervalseries.add(t / fps, 0, 0, 0);
+ }
+
+ cursorX++;
+ cursorY = 0;
+ }
+
+ xyDataset.addSeries(seriesXY);
+
+ yintervalseriescollection.addSeries(yintervalseries);
+
+ }
+ }
+ }
+
+ /**
+ * Refresh Datas
+ */
+ private void refreshData()
+ {
+
+ mainPanel.removeAll();
+
+ JPanel animalPoolListPanel = GuiUtil.generatePanel("Animal pool List");
+ JPanel criteriaListPanel = GuiUtil.generatePanel("criteria List");
+
+ ArrayList<SwimmingObject> liste = Icy.getMainInterface().getSwimmingPool().getObjects();
+ animalList.clear();
+
+ Animal animalToGetCriteria = null;
+ for (SwimmingObject so : liste)
+ {
+ if (so.getObject() instanceof Animal)
+ {
+ animalList.add(new AnimalPoolSelector((Animal) so.getObject()));
+ animalToGetCriteria = (Animal) so.getObject();
+ }
+ }
+
+ if (animalToGetCriteria == null) // there is no more animal in pool
+ {
+ return;
+ }
+
+ for (AnimalPoolSelector animalSelector : animalList)
+ {
+ animalPoolListPanel.add(animalSelector.panel);
+ }
+
+ mainPanel.add(GuiUtil.besidesPanel(new JLabel("Bin Size ( nb frames )"), binSizeTextField,
+ new JLabel("Total time to compute ( nb frames )"), totalTimeTextField));
+ // mainPanel.add( GuiUtil.besidesPanel ( displayLegendCheckBox , extractAllDataToGraphAndExcelMenuItem , extractDataToProbabilityGridButton ) );
+ // mainPanel.add( GuiUtil.besidesPanel ( displayLegendCheckBox , extractDataToProbabilityGridMenuItem ) );
+ // mainPanel.add( GuiUtil.besidesPanel ( displayLegendCheckBoxMenuItem ) );
+
+ // mainPanel.add( GuiUtil.besidesPanel( new JLabel("time window forward:") , extractDataToProbabilityTimeValue , extractCurrentDataGraphToExcelMenuItem
+ // ) );
+ mainPanel.add(GuiUtil.besidesPanel(new JLabel("time window forward:"), extractDataToProbabilityTimeValue));
+ mainPanel.add(GuiUtil.besidesPanel(new JLabel("FPS:"), fpsTextField));
+
+ eventSelectorList = new ArrayList<EventSelector>();
+
+ for (EventTimeLine et : animalToGetCriteria.eventTimeLineList)
+ {
+ EventSelector eventSelector = new EventSelector(animalToGetCriteria.eventTimeLineList.indexOf(et), et);
+ eventSelectorList.add(eventSelector);
+
+ criteriaListPanel.add(eventSelector.panel);
+ }
+
+ JPanel parameterPanel = new JPanel(new BorderLayout());
+
+ JScrollPane animalPoolListScrollPane = new JScrollPane(animalPoolListPanel,
+ JScrollPane.VERTICAL_SCROLLBAR_ALWAYS, JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
+ JScrollPane criteriaListScrollPane = new JScrollPane(criteriaListPanel, JScrollPane.VERTICAL_SCROLLBAR_ALWAYS,
+ JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
+
+ parameterPanel.add(animalPoolListScrollPane, BorderLayout.WEST);
+ parameterPanel.add(criteriaListScrollPane, BorderLayout.CENTER);
- }
+ mainPanel.add(parameterPanel);
+ graphFrame.getContentPane()
+ .add(new ChartPanel(chart, 700, 200, 700, 200, 700, 700, false, false, true, true, true, true));
+ graphFrame.pack();
- cursorY++;
+ refreshGraph(false, "");
- }
- }
- }
- return cursorY;
- }
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-}
+ mainPanel.updateUI();
+ }
+ @Override
+ public void swimmingPoolChangeEvent(SwimmingPoolEvent swimmingPoolEvent)
+ {
+ refreshData();
+ }
+ @Override
+ public void compute()
+ {
+ }
+ class EventSelector implements ActionListener
+ {
+ JPanel panel = GuiUtil.generatePanelWithoutBorder();
+ int eventNumber;
+ JCheckBox nbEventCheckBox = new JCheckBox("nb Event");
+ JCheckBox lengthCheckBox = new JCheckBox("length");
+ JCheckBox densityCheckBox = new JCheckBox("density");
+ JLabel criteriaLabel;
+ JCheckBox displayDiscreteValueCheckBox = new JCheckBox("discrete Value");
+ public EventSelector(int eventNumber, EventTimeLine e)
+ {
+ this.eventNumber = eventNumber;
+ int maxSizeString = e.criteriaName.length();
+ if (maxSizeString > 40)
+ maxSizeString = 40;
+ criteriaLabel = new JLabel(e.criteriaName.substring(0, maxSizeString));
+ criteriaLabel.setToolTipText(e.criteriaName);
+ if (e.timeLineCategory == TimeLineCategory.USE_BOOLEAN_EVENT)
+ {
+ panel.add(GuiUtil.besidesPanel(criteriaLabel, densityCheckBox, nbEventCheckBox, lengthCheckBox));
+ }
+ if (e.timeLineCategory == TimeLineCategory.USE_DISCRETE_EVENT)
+ {
+ panel.add(GuiUtil.besidesPanel(criteriaLabel, displayDiscreteValueCheckBox));
+ }
+ densityCheckBox.addActionListener(this);
+ nbEventCheckBox.addActionListener(this);
+ lengthCheckBox.addActionListener(this);
+ displayDiscreteValueCheckBox.addActionListener(this);
+ }
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ refreshGraph(false, "");
+ }
+ }
+ class AnimalPoolSelector implements ActionListener
+ {
+ JPanel panel = GuiUtil.generatePanelWithoutBorder();
+ Animal animal;
+ JCheckBox enable = new JCheckBox("Enable", true);
+ JRadioButton pool1 = new JRadioButton("Pool 1");
+ JRadioButton pool2 = new JRadioButton("Pool 2");
+ JRadioButton noPool = new JRadioButton("no pool", true);
+ ButtonGroup poolGroup = new ButtonGroup();
+ ButtonGroup carecterizationGroup = new ButtonGroup();
+ public AnimalPoolSelector(Animal animal)
+ {
+ this.animal = animal;
+ enable.addActionListener(this);
+ pool1.addActionListener(this);
+ pool2.addActionListener(this);
+ noPool.addActionListener(this);
+ poolGroup.add(pool1);
+ poolGroup.add(pool2);
+ poolGroup.add(noPool);
+ int maxSizeString = animal.animalName.length();
+ if (maxSizeString > 5)
+ maxSizeString = 5;
+ enable.setText(animal.animalName.substring(0, maxSizeString));
+ enable.setToolTipText(animal.animalName);
+ panel.add(GuiUtil.besidesPanel(new Component[] {
+ enable, pool1, pool2, noPool}
+ ));
+ }
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ refreshGraph(false, "");
+ }
+ }
+
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+
+ refreshGraph(false, "");
+
+ if (e.getSource() == extractCurrentDataGraphToExcelMenuItem)
+ {
+ extractCurrentDataGraphToExcel();
+ }
+
+ if (e.getSource() == extractAllDataToGraphAndExcelMenuItem)
+ {
+ exportAllData();
+ }
+
+ if (e.getSource() == extractDataToProbabilityGridMenuItem)
+ {
+ extractDataToProbabilityGrid2();
+ }
+
+ if (e.getSource() == extractCurrentDataGraphWithAllLabelDensityToExcelMenuItem)
+ {
+ extractDataGraphWithAllLabelDensityToExcel();
+ }
+
+ }
+
+ /**
+ * Extract all the data by selecting all the different criteria, one by one.
+ */
+ private void extractDataGraphWithAllLabelDensityToExcel()
+ {
+ String saveFileName = SaveDialog.chooseFile("Save xls file", "", "Mice Profiler - ");
+
+ if (saveFileName == null)
+ return;
+
+ for (EventSelector eventSelector : eventSelectorList)
+ {
+ for (EventSelector eventSelector2 : eventSelectorList) // clear all check boxes
+ {
+ eventSelector2.densityCheckBox.setSelected(false);
+ }
+
+ eventSelector.densityCheckBox.setSelected(true);
+
+ String eventLabel = eventSelector.criteriaLabel.getText().replaceAll("[^a-zA-Z0-9\\._]+", "_");
+ String fileName = saveFileName + " - " + eventLabel + ".xls";
+
+ refreshGraph(true, fileName);
+ }
+
+ }
+
+ private void extractCurrentDataGraphToExcel()
+ {
+
+ refreshGraph(true, null);
+
+ }
+
+ /**
+ * Extraction des grilles de proba de passage d'un etat a un autre sous feuille excel.
+ * Nouvelle version 2 (nov 2010)
+ */
+ private void extractDataToProbabilityGrid2()
+ {
+
+ System.out.println("export version nov 2010");
+
+ int timeWindow = Integer.parseInt(extractDataToProbabilityTimeValue.getText());
+ int offsetY = 3;
+ int offsetX = 1;
+
+ // XlsManager xls =null;
+ // try {
+ // xls = new XlsManager( System.getProperty("user.home") + "\\output "+(timeWindow-15)+"-"+timeWindow+"f.xls");
+ // } catch (IOException e) {
+ //
+ // e.printStackTrace();
+ // }
+
+ // JTextField startTextField = new JTextField("0");
+
+ ActionDialog actionDialog = new ActionDialog("Select parameters for tansition graph.");
+ JPanel mainPanel = new JPanel();
+ actionDialog.setPreferredSize(new Dimension(400, 400));
+ actionDialog.getMainPanel().add(new JScrollPane(mainPanel));
+ // actionDialog.getMainPanel().setLayout( new BoxLayout( actionDialog.getMainPanel() , BoxLayout.PAGE_AXIS ));
+ mainPanel.setLayout(new BoxLayout(mainPanel, BoxLayout.PAGE_AXIS));
+ animalList.get(0).animal.eventTimeLineList.size();
+
+ JTextField minProbability = new JTextField("0.3");
+ mainPanel.add(GuiUtil.createLineBoxPanel(new JLabel("Min probability: "), minProbability));
+ JTextField fpsTextField = new JTextField("15");
+ mainPanel.add(GuiUtil.createLineBoxPanel(new JLabel("FPS: "), fpsTextField));
+ JTextField maxNumberOfCandidateTextField = new JTextField("4");
+ mainPanel
+ .add(GuiUtil.createLineBoxPanel(new JLabel("Max number of ancestor: "), maxNumberOfCandidateTextField));
+ JCheckBox forceLocation = new JCheckBox("Force the location of the event in the graph (circular rendering)",
+ false);
+ mainPanel.add(GuiUtil.createLineBoxPanel(forceLocation));
+
+ HashMap<Integer, JCheckBox> selectedEventHashMap = new HashMap<Integer, JCheckBox>();
+
+ for (EventTimeLine event : animalList.get(0).animal.eventTimeLineList)
+ {
+ JCheckBox booleanField = new JCheckBox(event.criteriaName, true);
+ // actionDialog.getMainPanel().add( GuiUtil.createLineBoxPanel( booleanField ) );
+ mainPanel.add(GuiUtil.createLineBoxPanel(booleanField));
+ int index = animalList.get(0).animal.eventTimeLineList.indexOf(event);
+ selectedEventHashMap.put(index, booleanField);
+ if (index == 1)
+ booleanField.setSelected(false);
+ if (index >= 7 && index <= 10)
+ booleanField.setSelected(false);
+ if (index >= 13 && index <= 20)
+ booleanField.setSelected(false);
+ if (index >= 27)
+ booleanField.setSelected(false);
+
+ }
+ actionDialog.pack();
+ actionDialog.setLocationRelativeTo(null);
+ actionDialog.setVisible(true);
+
+ if (actionDialog.isCanceled())
+ return;
+
+ float fps = Float.parseFloat(fpsTextField.getText());
+ int MAX_NUMBER_OF_CANDIDATE = Integer.parseInt(maxNumberOfCandidateTextField.getText());
+
+ System.out.println("WARNING:");
+ System.out.println(
+ "This output consider all the loaded animal in the Label Analyser as coming from the same pool.");
+ System.out.println("i.e. only 1 pool is considered.");
+ System.out.println("version Jan 2013. p>0.1 instead of p>0.3");
+
+ int nbTotalDeCritere = animalList.get(0).animal.eventTimeLineList.size();
+
+ float poolProba0_4[][][] = new float[animalList.size()][nbTotalDeCritere][nbTotalDeCritere];
+ float poolProba4_8[][][] = new float[animalList.size()][nbTotalDeCritere][nbTotalDeCritere];
+
+ for (int animalNumber = 0; animalNumber < animalList.size(); animalNumber++)
+ {
+ Animal animal = animalList.get(animalNumber).animal;
+ // xls.createNewPage( animal.animalName );
+
+ // xls.setLabel( 0 , 0 , "se lit: event de la colonne x a une proba p d etre precede par ligne y");
+ // xls.setLabel( 0 , 1 , "timeforward(frames):" + (timeWindow-15) + " to " + timeWindow );
+ // xls.setLabel( 0 , 2 , "animal:" + animal.animalName );
+
+ // int FENETRE_RECHERCHE_FRAME = 15*3;
+ int FENETRE_RECHERCHE_FRAME = (int) (fps * 3);
+
+ for (int eventNumberSource = 0; eventNumberSource < animal.eventTimeLineList.size(); eventNumberSource++) // parcours la liste des events.
+ {
+
+ // xls.setNumber( 2*eventNumberSource+1 + offsetX, 0 + offsetY , eventNumberSource + 1 );
+
+ for (int eventNumberTarget = 0; eventNumberTarget < animal.eventTimeLineList
+ .size(); eventNumberTarget++) // parcours la liste des events.
+ {
+
+ // xls.setNumber( 0 + offsetX , eventNumberTarget+1 + offsetY , eventNumberTarget + 1 );
+ // xls.setLabel( 0 , eventNumberTarget+1 + offsetY , animalList.get( 0 ).animal.eventTimeLineList.get( eventNumberTarget ).criteriaName );
+
+ EventTimeLine eventTimeLineSource = animal.eventTimeLineList.get(eventNumberSource);
+ EventTimeLine eventTimeLineTarget = animal.eventTimeLineList.get(eventNumberTarget);
+
+ float nbEventSource04 = 0;
+ float nbEventTarget04 = 0;
+ float nbPassageSourceTargetOk04 = 0;
+ float nbPassageTargetSourceOk04 = 0;
+
+ for (EventCriteria eventCriteriaSource : eventTimeLineSource.eventList)
+ {
+ if (eventCriteriaSource.startFrame > 3600)
+ continue;
+ nbEventSource04++;
+
+ for (EventCriteria eventCriteriaTarget : eventTimeLineTarget.eventList)
+ {
+ if (eventCriteriaTarget.startFrame > 3600)
+ continue;
+
+ if (eventCriteriaTarget.startFrame >= eventCriteriaSource.endFrame
+ && eventCriteriaTarget.startFrame <= eventCriteriaSource.endFrame
+ + FENETRE_RECHERCHE_FRAME)
+ {
+ nbPassageSourceTargetOk04++;
+ break;
+ }
+ }
+ }
+
+ for (EventCriteria eventCriteriaTarget : eventTimeLineTarget.eventList)
+ {
+ if (eventCriteriaTarget.startFrame > 3600)
+ continue;
+ nbEventTarget04++;
+
+ for (EventCriteria eventCriteriaSource : eventTimeLineSource.eventList)
+ {
+ if (eventCriteriaSource.startFrame > 3600)
+ continue;
+ if (eventCriteriaTarget.startFrame >= eventCriteriaSource.endFrame
+ && eventCriteriaTarget.startFrame <= eventCriteriaSource.endFrame
+ + FENETRE_RECHERCHE_FRAME)
+ {
+ nbPassageTargetSourceOk04++;
+ break;
+ }
+ }
+ }
+
+ float probaStoT04 = nbPassageSourceTargetOk04 / nbEventSource04;
+ float probaTtoS04 = nbPassageTargetSourceOk04 / nbEventTarget04;
+ float proba2Way04 = probaStoT04 * probaTtoS04;
+
+ float nbEventSource48 = 0;
+ float nbEventTarget48 = 0;
+ float nbPassageSourceTargetOk48 = 0;
+ float nbPassageTargetSourceOk48 = 0;
+
+ for (EventCriteria eventCriteriaSource : eventTimeLineSource.eventList)
+ {
+ if (eventCriteriaSource.startFrame < 3600)
+ continue;
+ nbEventSource48++;
+
+ for (EventCriteria eventCriteriaTarget : eventTimeLineTarget.eventList)
+ {
+ if (eventCriteriaTarget.startFrame < 3600)
+ continue;
+
+ if (eventCriteriaTarget.startFrame >= eventCriteriaSource.endFrame
+ && eventCriteriaTarget.startFrame <= eventCriteriaSource.endFrame
+ + FENETRE_RECHERCHE_FRAME)
+ {
+ nbPassageSourceTargetOk48++;
+ break;
+ }
+ }
+ }
+
+ for (EventCriteria eventCriteriaTarget : eventTimeLineTarget.eventList)
+ {
+ if (eventCriteriaTarget.startFrame < 3600)
+ continue;
+ nbEventTarget48++;
+
+ for (EventCriteria eventCriteriaSource : eventTimeLineSource.eventList)
+ {
+ if (eventCriteriaSource.startFrame < 3600)
+ continue;
+ if (eventCriteriaTarget.startFrame >= eventCriteriaSource.endFrame
+ && eventCriteriaTarget.startFrame <= eventCriteriaSource.endFrame
+ + FENETRE_RECHERCHE_FRAME)
+ {
+ nbPassageTargetSourceOk48++;
+ break;
+ }
+ }
+ }
+
+ float probaStoT48 = nbPassageSourceTargetOk48 / nbEventSource48;
+ float probaTtoS48 = nbPassageTargetSourceOk48 / nbEventTarget48;
+ float proba2Way48 = probaStoT48 * probaTtoS48;
+
+ if (eventNumberSource != 9 && eventNumberSource != 10 && eventNumberTarget != 9
+ && eventNumberTarget != 10) // enleve le speed
+ {
+ poolProba0_4[animalNumber][eventNumberSource][eventNumberTarget] = proba2Way04;
+ poolProba4_8[animalNumber][eventNumberSource][eventNumberTarget] = proba2Way48;
+ }
+
+ }
+ }
+
+ }
+
+ float meanAnimalProba0_4[][] = new float[nbTotalDeCritere][nbTotalDeCritere];
+ float stddevAnimalProba0_4[][] = new float[nbTotalDeCritere][nbTotalDeCritere];
+ float meanAnimalProba4_8[][] = new float[nbTotalDeCritere][nbTotalDeCritere];
+ float stddevAnimalProba4_8[][] = new float[nbTotalDeCritere][nbTotalDeCritere];
+
+ for (int eventNumberSource = 0; eventNumberSource < nbTotalDeCritere; eventNumberSource++) // parcours la liste des events.
+ {
+ for (int eventNumberTarget = 0; eventNumberTarget < nbTotalDeCritere; eventNumberTarget++) // parcours la liste des events.
+ {
+ float[] tabProba = new float[animalList.size()];
+ for (int animalNumber = 0; animalNumber < animalList.size(); animalNumber++)
+ {
+ tabProba[animalNumber] = poolProba0_4[animalNumber][eventNumberSource][eventNumberTarget];
+ meanAnimalProba0_4[eventNumberSource][eventNumberTarget] += poolProba0_4[animalNumber][eventNumberSource][eventNumberTarget];
+
+ }
+ meanAnimalProba0_4[eventNumberSource][eventNumberTarget] /= animalList.size();
+ stddevAnimalProba0_4[eventNumberSource][eventNumberTarget] = flanagan.analysis.Stat
+ .standardDeviation(tabProba);
+ ;
+ }
+ }
+
+ for (int eventNumberSource = 0; eventNumberSource < nbTotalDeCritere; eventNumberSource++) // parcours la liste des events.
+ {
+ for (int eventNumberTarget = 0; eventNumberTarget < nbTotalDeCritere; eventNumberTarget++) // parcours la liste des events.
+ {
+ float[] tabProba = new float[animalList.size()];
+ for (int animalNumber = 0; animalNumber < animalList.size(); animalNumber++)
+ {
+ tabProba[animalNumber] = poolProba4_8[animalNumber][eventNumberSource][eventNumberTarget];
+ meanAnimalProba4_8[eventNumberSource][eventNumberTarget] += poolProba4_8[animalNumber][eventNumberSource][eventNumberTarget];
+
+ }
+ meanAnimalProba4_8[eventNumberSource][eventNumberTarget] /= animalList.size();
+ stddevAnimalProba4_8[eventNumberSource][eventNumberTarget] = flanagan.analysis.Stat
+ .standardDeviation(tabProba);
+ ;
+ }
+ }
+
+ ArrayList<ArrayList<EventResult>> resultatParSource0_4 = new ArrayList<ArrayList<EventResult>>();
+ ArrayList<ArrayList<EventResult>> resultatParSource4_8 = new ArrayList<ArrayList<EventResult>>();
+
+ // int MAX_NUMBER_OF_CANDIDATE = 4; // was 4
+
+ {
+ for (int nbEventTarget = 0; nbEventTarget < nbTotalDeCritere; nbEventTarget++)
+ {
+ ArrayList<EventResult> eventResultList = new ArrayList<EventResult>();
+ for (int nbEventSource = 0; nbEventSource < nbTotalDeCritere; nbEventSource++)
+ {
+ JCheckBox eTarget = selectedEventHashMap.get(nbEventTarget);
+ JCheckBox eSource = selectedEventHashMap.get(nbEventSource);
+ if (!eTarget.isSelected() || !eSource.isSelected())
+ continue;
+
+ /*
+ * if ( nbEventTarget == 1 || nbEventSource == 1 ) continue;
+ * if ( nbEventTarget == 7 || nbEventSource == 7 ) continue;
+ * if ( nbEventTarget == 8 || nbEventSource == 8 ) continue;
+ * if ( nbEventTarget == 9 || nbEventSource == 9 ) continue;
+ * if ( nbEventTarget == 10 || nbEventSource == 10 ) continue;
+ * if ( nbEventTarget == 13 || nbEventSource == 13 ) continue;
+ * if ( nbEventTarget == 14 || nbEventSource == 14 ) continue;
+ * if ( nbEventTarget == 15 || nbEventSource == 15 ) continue;
+ * if ( nbEventTarget == 16 || nbEventSource == 16 ) continue;
+ * if ( nbEventTarget == 17 || nbEventSource == 17 ) continue;
+ * if ( nbEventTarget == 18 || nbEventSource == 18 ) continue;
+ * if ( nbEventTarget == 19 || nbEventSource == 19 ) continue;
+ * if ( nbEventTarget == 20 || nbEventSource == 20 ) continue;
+ * if ( nbEventTarget >= 27 || nbEventSource >= 27 ) continue;
+ */
+
+ float probaProposee = meanAnimalProba0_4[nbEventSource][nbEventTarget];
+ float stddevPropose = stddevAnimalProba0_4[nbEventSource][nbEventTarget];
+
+ ArrayList<EventResult> eventResultListClone = (ArrayList<EventResult>) eventResultList.clone();
+
+ for (EventResult resultClient : eventResultListClone)
+ {
+ if (resultClient.proba < probaProposee)
+ {
+ eventResultList.remove(resultClient);
+ break;
+ }
+ }
+
+ if (eventResultList.size() < MAX_NUMBER_OF_CANDIDATE)
+ {
+ EventResult result = new EventResult(nbEventSource, nbEventTarget, probaProposee, stddevPropose,
+ "red");
+ eventResultList.add(result);
+ }
+
+ }
+ resultatParSource0_4.add(eventResultList);
+
+ }
+ }
+
+ {
+
+ for (int nbEventTarget = 0; nbEventTarget < nbTotalDeCritere; nbEventTarget++)
+ {
+ ArrayList<EventResult> eventResultList = new ArrayList<EventResult>();
+ for (int nbEventSource = 0; nbEventSource < nbTotalDeCritere; nbEventSource++)
+ {
+ JCheckBox eTarget = selectedEventHashMap.get(nbEventTarget);
+ JCheckBox eSource = selectedEventHashMap.get(nbEventSource);
+ if (!eTarget.isSelected() || !eSource.isSelected())
+ continue;
+ //
+ // if ( nbEventTarget == 1 || nbEventSource == 1 ) continue;
+ // if ( nbEventTarget == 7 || nbEventSource == 7 ) continue;
+ // if ( nbEventTarget == 8 || nbEventSource == 8 ) continue;
+ // if ( nbEventTarget == 9 || nbEventSource == 9 ) continue;
+ // if ( nbEventTarget == 10 || nbEventSource == 10 ) continue;
+ // if ( nbEventTarget == 13 || nbEventSource == 13 ) continue;
+ // if ( nbEventTarget == 14 || nbEventSource == 14 ) continue;
+ // if ( nbEventTarget == 15 || nbEventSource == 15 ) continue;
+ // if ( nbEventTarget == 16 || nbEventSource == 16 ) continue;
+ // if ( nbEventTarget == 17 || nbEventSource == 17 ) continue;
+ // if ( nbEventTarget == 18 || nbEventSource == 18 ) continue;
+ // if ( nbEventTarget == 19 || nbEventSource == 19 ) continue;
+ // if ( nbEventTarget == 20 || nbEventSource == 20 ) continue;
+ // if ( nbEventTarget >= 27 || nbEventSource >= 27 ) continue;
+
+ float probaProposee = meanAnimalProba4_8[nbEventSource][nbEventTarget];
+ float stddevPropose = stddevAnimalProba4_8[nbEventSource][nbEventTarget];
+
+ ArrayList<EventResult> eventResultListClone = (ArrayList<EventResult>) eventResultList.clone();
+
+ for (EventResult resultClient : eventResultListClone)
+ {
+ if (resultClient.proba < probaProposee)
+ {
+ eventResultList.remove(resultClient);
+ break;
+ }
+ }
+
+ if (eventResultList.size() < MAX_NUMBER_OF_CANDIDATE)
+ {
+ EventResult result = new EventResult(nbEventSource, nbEventTarget, probaProposee, stddevPropose,
+ "green");
+ eventResultList.add(result);
+ }
+
+ }
+ resultatParSource4_8.add(eventResultList);
+
+ }
+ }
+
+ // GRAPH:
+
+ boolean FORCE_LOCATION = forceLocation.isSelected();
+
+ System.out.println("Put the following script in GraphViz:");
+ if (FORCE_LOCATION)
+ {
+ System.out.println("/* @command = neato **/");
+ }
+ System.out.println("digraph {");
+ System.out.println("splines=true;");
+
+ // set the location of each available event
+
+ if (FORCE_LOCATION)
+ {
+ double x = 0;
+ double y = 0;
+ double angle = 0;
+
+ for (int eventIndex = 0; eventIndex < nbTotalDeCritere; eventIndex++)
+ {
+ JCheckBox eventBox = selectedEventHashMap.get(eventIndex);
+ if (!eventBox.isSelected())
+ continue;
+ //
+ // if( eventIndex == 1 ) continue;
+ // if( eventIndex == 7 ) continue;
+ // if( eventIndex == 8 ) continue;
+ // if( eventIndex == 9 ) continue;
+ // if( eventIndex == 10 ) continue;
+ // if( eventIndex == 13 ) continue;
+ // if( eventIndex == 14 ) continue;
+ // if( eventIndex == 15 ) continue;
+ // if( eventIndex == 16 ) continue;
+ // if( eventIndex == 17 ) continue;
+ // if( eventIndex == 18 ) continue;
+ // if( eventIndex == 19 ) continue;
+ // if( eventIndex == 20 ) continue;
+ // if( eventIndex >= 27 ) continue;
+
+ x = 300 + Math.cos(angle) * 300;
+ y = 300 + Math.sin(angle) * 300;
+
+ String criteriaName = animalList.get(0).animal.eventTimeLineList.get(eventIndex).criteriaName;
+ criteriaName = keepFirstChars(criteriaName);
+
+ String result = "\"" + criteriaName + "\"";
+ result += "[";
+ result += " pos=\"" + x + "," + y + "!" + "\" ";
+ result += " shape=\"box\" ";
+ result += " width=\"2\" ";
+ result += "]";
+
+ System.out.println(result);
+
+ angle += (Math.PI * 2d) / 14d;
+
+ // x+=200;
+ // if ( x > 100 )
+ // {
+ // y+=100;
+ // x=0;
+ // }
+
+ }
+
+ }
+
+ // animalList.get( 0 ).animal.eventTimeLineList.get( eventSource ).criteriaName
+
+ // create graph
+
+ for (int sourceList = 0; sourceList < nbTotalDeCritere; sourceList++)
+ {
+ ArrayList<EventResult> eventResultList0_4 = resultatParSource0_4.get(sourceList);
+ ArrayList<EventResult> eventResultList4_8 = resultatParSource4_8.get(sourceList);
+
+ ArrayList<EventResult> finalResult = createCommonList(eventResultList0_4, eventResultList4_8);
+
+ for (EventResult eventResult : finalResult)
+ {
+ if (eventResult.enable)
+ {
+ if (eventResult.proba >= 0.1f) // was 0.3f
+ {
+ System.out.println(eventResult);
+ }
+ else
+ {
+
+ }
+ }
+ }
+
+ }
+
+ System.out.println("}");
+
+ // xls.SaveAndClose();
+
+ }
+
+ ArrayList<EventResult> createCommonList(ArrayList<EventResult> eventResultList0_4,
+ ArrayList<EventResult> eventResultList4_8)
+ {
+ ArrayList<EventResult> finalResult = new ArrayList<EventResult>();
+ for (EventResult eventResult0_4 : eventResultList0_4)
+ {
+ finalResult.add(eventResult0_4);
+ }
+ for (EventResult eventResult4_8 : eventResultList4_8)
+ {
+ finalResult.add(eventResult4_8);
+ }
+
+ for (EventResult eventResultA : finalResult)
+ {
+ for (EventResult eventResultB : finalResult)
+ {
+ if (eventResultA != eventResultB && eventResultA.enable && eventResultB.enable
+ && eventResultA.eventSource == eventResultB.eventSource
+ && eventResultA.eventTarget == eventResultB.eventTarget
+ && checkIfProbaOverlap(eventResultA, eventResultB))
+ {
+ eventResultA.proba = (eventResultA.proba + eventResultB.proba) / 2f;
+ eventResultB.enable = false;
+ eventResultA.color = "black";
+ }
+
+ }
+ }
+
+ return finalResult;
+ }
+
+ private boolean checkIfProbaOverlap(EventResult eventResultA, EventResult eventResultB)
+ {
+ float sigma = 1f;
+
+ float borneMinA = eventResultA.proba - eventResultA.stddev * sigma;
+ float borneMaxA = eventResultA.proba + eventResultA.stddev * sigma;
+
+ float borneMinB = eventResultB.proba - eventResultB.stddev * sigma;
+ float borneMaxB = eventResultB.proba + eventResultB.stddev * sigma;
+
+ if (borneMinA > borneMinB && borneMinA < borneMaxB)
+ return true;
+ if (borneMaxA > borneMinB && borneMaxA < borneMaxB)
+ return true;
+
+ return false;
+ }
+
+ class ProbaResult
+ {
+ public ProbaResult(float proba, float stddev, int startFrame)
+ {
+ this.stddev = stddev;
+ this.proba = proba;
+ this.startFrame = startFrame;
+ }
+
+ float stddev;
+ float proba;
+ int startFrame;
+ }
+
+ class EventResult
+ {
+ boolean enable = true;
+
+ public EventResult(int eventSource, int eventTarget, float proba, float stddev, String color)
+ {
+ this.eventSource = eventSource;
+ this.eventTarget = eventTarget;
+ this.stddev = stddev;
+ this.proba = proba;
+ this.color = color;
+ }
+
+ float stddev;
+ int eventSource;
+ int eventTarget;
+ float proba;
+ String color;
+
+ @Override
+ public String toString()
+ {
+
+ String result = "";
+ result += "\"" + keepFirstChars(animalList.get(0).animal.eventTimeLineList.get(eventSource).criteriaName)
+ + "\"";
+ result += "->";
+ result += "\"" + keepFirstChars(animalList.get(0).animal.eventTimeLineList.get(eventTarget).criteriaName)
+ + "\"";
+ result += " ";
+ result += "[ ";
+ result += "color=\"" + color + "\"";
+ result += " style=\"setlinewidth(" + proba * 5 + ")\"]";
+ result += ";";
+
+ return result;
+ }
+
+ /**
+ * Just provide the name of events. Without link.
+ *
+ * @return
+ */
+ public String getEvents()
+ {
+ String result = "";
+ result += "\"" + keepFirstChars(animalList.get(0).animal.eventTimeLineList.get(eventSource).criteriaName)
+ + "\"";
+ result += ";";
+ result += "\"" + keepFirstChars(animalList.get(0).animal.eventTimeLineList.get(eventTarget).criteriaName)
+ + "\"";
+ result += ";";
+ return result;
+ }
+
+ }
+
+ public static String keepFirstChars(String s)
+ {
+ int MAXSIZE = 20;
+ if (s.length() > MAXSIZE)
+ s = (String) s.substring(0, MAXSIZE);
+ return s;
+ }
+
+ void exportAllData()
+ {
+ System.out.println("export all data in pool to excel.");
+
+ // export pool 1
+
+ // String saveFileName = SaveDialog.chooseFile("Export all data to xls file", System.getProperty("user.home") ,"output.xls", ".xls");
+
+ JTextField startTextField = new JTextField("0");
+ JTextField endTextField = new JTextField("8");
+
+ ActionDialog actionDialog = new ActionDialog("Select range (in minutes)");
+ actionDialog.getMainPanel().setLayout(new BoxLayout(actionDialog.getMainPanel(), BoxLayout.PAGE_AXIS));
+ actionDialog.getMainPanel().add(GuiUtil.createLineBoxPanel(new JLabel("start (minutes)"), startTextField));
+ actionDialog.getMainPanel().add(GuiUtil.createLineBoxPanel(new JLabel("end (minutes)"), endTextField));
+ actionDialog.pack();
+ actionDialog.setLocationRelativeTo(null);
+ actionDialog.setVisible(true);
+
+ if (actionDialog.isCanceled())
+ return;
+
+ float startMinute = Float.parseFloat(startTextField.getText());
+ float endMinute = Float.parseFloat(endTextField.getText());
+
+ String saveFileName = SaveDialog.chooseFile("Save xls file", "", "Mice Profiler - all data", ".xls");
+
+ if (saveFileName == null)
+ return;
+ XlsManager xls = null;
+
+ try
+ {
+
+ xls = new XlsManager(saveFileName);
+ xls.createNewPage("Data in pool");
+
+ }
+ catch (IOException e)
+ {
+
+ e.printStackTrace();
+ }
+
+ xls.createNewPage("Results");
+
+ int cursorY = 0;
+
+ for (EventSelector eventSelector : eventSelectorList)
+ {
+ String eventTitle = animalList.get(0).animal.eventTimeLineList.get(eventSelector.eventNumber).criteriaName;
+
+ xls.setLabel(0, cursorY, "Event #" + eventSelector.eventNumber, Colour.YELLOW);
+ cursorY++;
+ xls.setLabel(0, cursorY, eventTitle);
+ cursorY += 2;
+
+ cursorY = exportXLSPool(1, eventSelector, cursorY, xls, startMinute, endMinute);
+ cursorY += 3;
+ cursorY = exportXLSPool(2, eventSelector, cursorY, xls, startMinute, endMinute);
+ cursorY += 4;
+ }
+
+ xls.SaveAndClose();
+
+ }
+
+ int exportXLSPool(int pool, EventSelector eventSelector, int cursorY, XlsManager xls, float startMinute,
+ float endMinute)
+ {
+ float halfMinute = (endMinute + startMinute) / 2f;
+
+ xls.setLabel(0, cursorY, "p" + pool);
+ // xls.setLabel( 1, cursorY, "nb e 0-4" );
+ xls.setLabel(1, cursorY, "nb event from " + startMinute + " to " + halfMinute + " minutes");
+ // xls.setLabel( 2, cursorY, "nb e 4-8" );
+ xls.setLabel(2, cursorY, "nb event from " + halfMinute + " to " + endMinute + " minutes");
+ // xls.setLabel( 3, cursorY, "nb e 0-8" );
+ xls.setLabel(3, cursorY, "nb event from " + startMinute + " to " + endMinute + " minutes");
+
+ // xls.setLabel( 4, cursorY, "l e 0-4" );
+ xls.setLabel(4, cursorY, "length of event from " + startMinute + " to " + halfMinute + " minutes");
+ // xls.setLabel( 5, cursorY, "l e 4-8" );
+ xls.setLabel(5, cursorY, "length of event from " + halfMinute + " to " + endMinute + " minutes");
+ // xls.setLabel( 6, cursorY, "l e 0-8" );
+ xls.setLabel(6, cursorY, "length of event from " + startMinute + " to " + endMinute + " minutes");
+
+ float fps = Float.parseFloat(fpsTextField.getText());
+
+ cursorY++;
+
+ for (AnimalPoolSelector animalSelector : animalList)
+ {
+ if (pool == 1 && animalSelector.pool1.isSelected() || pool == 2 && animalSelector.pool2.isSelected())
+ {
+ if (animalSelector.enable.isSelected())
+ {
+ xls.setLabel(0, cursorY, animalSelector.animal.animalName);
+
+ Animal animal = animalSelector.animal;
+ EventTimeLine eventTimeLine = animal.eventTimeLineList.get(eventSelector.eventNumber);
+
+ // boolean debug = false;
+
+ // nb event e 0-4 le
+ // if ( debug ) System.out.println("0-4");
+ {
+ int nb = 0;
+ int length = 0;
+
+ // int maxTime = (int) (4*60*fps);
+ int maxTime = (int) (halfMinute * 60 * fps);
+ int minTime = (int) (startMinute * 60 * fps);
+
+ for (EventCriteria event : eventTimeLine.eventList)
+ {
+ if (event.startFrame < maxTime && event.startFrame >= minTime)
+ {
+ nb++;
+ length += event.getLength();
+ // if ( debug )
+ // {
+ // System.out.println( eventTimeLine.eventList.indexOf( event ) + ">" + event.getLength() );
+ // }
+ }
+ }
+ xls.setNumber(1, cursorY, nb);
+ xls.setNumber(4, cursorY, length);
+ // if ( debug )
+ // {
+ // System.out.println( "nb event"+nb );
+ // System.out.println( "length event"+length );
+ // }
+
+ }
+
+ // nb event e 4-8 le
+ // if ( debug ) System.out.println("4-8");
+ {
+ int nb = 0;
+ int length = 0;
+
+ // int minTime = (int)(4d*60d*fps);
+ int minTime = (int) (halfMinute * 60d * fps);
+ int maxTime = (int) (endMinute * 60 * fps);
+ for (EventCriteria event : eventTimeLine.eventList)
+ {
+ if (event.startFrame < maxTime && event.startFrame > minTime)
+ {
+ nb++;
+ length += event.getLength();
+ // if ( debug )
+ // {
+ // System.out.println( eventTimeLine.eventList.indexOf( event ) + ">" + event.getLength() );
+ // }
+ }
+ }
+ xls.setNumber(2, cursorY, nb);
+ xls.setNumber(5, cursorY, length);
+ // if ( debug )
+ // {
+ // System.out.println( "nb event"+nb );
+ // System.out.println( "length event"+length );
+ // }
+
+ }
+
+ // nb event e 0-8 le
+ // if ( debug ) System.out.println("0-8");
+ {
+ int nb = 0;
+ int length = 0;
+ int minTime = (int) (startMinute * 60d * fps);
+ // int maxTime = (int) (8*60*fps);
+ int maxTime = (int) (endMinute * 60 * fps);
+ for (EventCriteria event : eventTimeLine.eventList)
+ {
+ if (event.startFrame < maxTime && event.startFrame > minTime)
+ {
+ nb++;
+ length += event.getLength();
+ // if ( debug )
+ // {
+ // System.out.println( eventTimeLine.eventList.indexOf( event ) + ">" + event.getLength() );
+ // }
+ }
+ }
+ xls.setNumber(3, cursorY, nb);
+ xls.setNumber(6, cursorY, length);
+ // if ( debug )
+ // {
+ // System.out.println( "nb event"+nb );
+ // System.out.println( "length event"+length );
+ // }
+
+ }
+
+ cursorY++;
+
+ }
+ }
+ }
+ return cursorY;
+ }
+
+ @Override
+ public String getMainPluginClassName()
+ {
+ return MiceProfilerTracker.class.getName();
+ }
+}
\ No newline at end of file
diff --git a/src/main/java/plugins/fab/MiceProfiler/MiceProfilerVideoLabelMaker.java b/src/main/java/plugins/fab/MiceProfiler/MiceProfilerVideoLabelMaker.java
index c7ca58a8d2b98a1f8e5a21829d51e878db541013..1ac656dbe67880cc3a243a02cca771f44e2f72f8 100644
--- a/src/main/java/plugins/fab/MiceProfiler/MiceProfilerVideoLabelMaker.java
+++ b/src/main/java/plugins/fab/MiceProfiler/MiceProfilerVideoLabelMaker.java
@@ -18,27 +18,6 @@
*/
package plugins.fab.MiceProfiler;
-import icy.file.FileUtil;
-import icy.file.Loader;
-import icy.file.Saver;
-import icy.file.xls.XlsManager;
-import icy.gui.dialog.MessageDialog;
-import icy.gui.frame.IcyFrame;
-import icy.gui.frame.progress.AnnounceFrame;
-import icy.gui.frame.progress.ToolTipFrame;
-import icy.gui.util.FontUtil;
-import icy.gui.util.GuiUtil;
-import icy.image.IcyBufferedImage;
-import icy.image.IcyBufferedImageUtil;
-import icy.main.Icy;
-import icy.plugin.abstract_.Plugin;
-import icy.plugin.interface_.PluginImageAnalysis;
-import icy.sequence.Sequence;
-import icy.swimmingPool.SwimmingObject;
-import icy.type.DataType;
-import icy.util.XLSUtil;
-import icy.util.XMLUtil;
-
import java.awt.BasicStroke;
import java.awt.BorderLayout;
import java.awt.Color;
@@ -87,13 +66,6 @@ import javax.xml.xpath.XPathConstants;
import javax.xml.xpath.XPathExpressionException;
import javax.xml.xpath.XPathFactory;
-import jxl.Sheet;
-import jxl.Workbook;
-import jxl.read.biff.BiffException;
-import jxl.write.WritableSheet;
-import jxl.write.WritableWorkbook;
-import jxl.write.WriteException;
-
import org.jfree.chart.ChartFactory;
import org.jfree.chart.ChartPanel;
import org.jfree.chart.JFreeChart;
@@ -103,5265 +75,5326 @@ import org.jfree.data.xy.XYSeriesCollection;
import org.jfree.data.xy.YIntervalSeriesCollection;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
-import org.w3c.dom.Node;
import org.w3c.dom.NodeList;
+import icy.file.FileUtil;
+import icy.file.Loader;
+import icy.file.Saver;
+import icy.file.xls.XlsManager;
+import icy.gui.dialog.MessageDialog;
+import icy.gui.frame.IcyFrame;
+import icy.gui.frame.progress.AnnounceFrame;
+import icy.gui.frame.progress.ToolTipFrame;
+import icy.gui.util.FontUtil;
+import icy.gui.util.GuiUtil;
+import icy.image.IcyBufferedImage;
+import icy.image.IcyBufferedImageUtil;
+import icy.main.Icy;
+import icy.plugin.abstract_.Plugin;
+import icy.plugin.interface_.PluginBundled;
+import icy.plugin.interface_.PluginImageAnalysis;
+import icy.sequence.Sequence;
+import icy.swimmingPool.SwimmingObject;
+import icy.type.DataType;
+import icy.util.XLSUtil;
+import icy.util.XMLUtil;
+import jxl.Sheet;
+import jxl.Workbook;
+import jxl.read.biff.BiffException;
+import jxl.write.WritableSheet;
+import jxl.write.WritableWorkbook;
+import jxl.write.WriteException;
+public class MiceProfilerVideoLabelMaker extends Plugin implements PluginImageAnalysis, PluginBundled,ActionListener, KeyListener
+{
+
+ JPanel mainPanel = new JPanel();
+ IcyFrame mainFrame = new IcyFrame("Video Label Maker", true, true, true, true);
+ JMenuBar menuBar = new JMenuBar();
+ JMenuItem openFileMenuItem = new JMenuItem("Open XML File...");
+ JMenuItem compileImageFileMenuItem = new JMenuItem("Compile image files from a list of file...");
+ JMenuItem mergeHeatMapMenuItem = new JMenuItem("Stitch heatmap files...");
+
+ JScrollPane scrollPane = new JScrollPane(mainPanel);
+ JPanel setupPanel = GuiUtil.generatePanel("Setup");
+ JLabel legendLabel = new JLabel("Legend", JLabel.CENTER);
+ JTextField scaleTextField = new JTextField("0.22");
+ JTextField scaleVideoTextField = new JTextField("1");
+
+ int START_MINUTE = 0;
+ int NB_MINUTE = 8;
+
+ float SEUIL_DISTANCE_1 = 22;
+ float SEUIL_DISTANCE_2 = 40;
+ float SEUIL_DISTANCE_HEAD_HEAD = 15;
+ float SEUIL_DISTANCE_HEAD_GENITAL = 15;
+ float SEUIL_SIDE = 12;
+ float SPEED_THRESHOLD_1 = (float) 0.5f;
+ float SPEED_THRESHOLD_2 = 2;
+ float SPEED_THRESHOLD_3 = 4;
+ float FPS = 15f;
+ float LOAD_FRAME_START = 0f;
+ float LOAD_FRAME_END = 10000000f;
+ float SCALE = 0.22f;
+
+ JTextField distance1TextField = new JTextField();
+ JTextField distance2TextField = new JTextField();
+ JTextField distanceHeadHeadTextField = new JTextField();
+ JTextField distanceHeadGenitalTextField = new JTextField();
+ JTextField seuilSideTextField = new JTextField();
+ JTextField speed_threshold1TextField = new JTextField();
+ JTextField speed_threshold2TextField = new JTextField();
+ JTextField speed_threshold3TextField = new JTextField();
+ JTextField fpsTextField = new JTextField();
+ // JTextField loadFrameStartTextField = new JTextField();
+ // JTextField loadFrameEndTextField = new JTextField();
+ JTextField computeImageStartMinuteTextField = new JTextField();
+ JTextField computeImageNbMinuteTextField = new JTextField();
+ JButton refreshButton = new JButton("Refresh Data with new parameters");
+
+ BufferedImage videoImage = new BufferedImage(200, 200, BufferedImage.TYPE_INT_BGR);
+ ImageComponent imageVideoComponent = new ImageComponent();
+ JLabel videoTimeLabel = new JLabel("", JLabel.CENTER);
+ int stepY = 15;
+
+ @Override
+ public void compute()
+ {
+
+ mainFrame.pack();
+
+ mainPanel.setLayout(new BoxLayout(mainPanel, BoxLayout.Y_AXIS));
+
+ videoTimeLabel.setFont(new Font("Arial", Font.BOLD, 15));
+ legendLabel.setFont(new Font("Arial", Font.BOLD, 20));
+
+ JMenu fileMenu = new JMenu("File");
+ fileMenu.add(openFileMenuItem);
+ openFileMenuItem.addActionListener(this);
+ fileMenu.addSeparator();
+ fileMenu.add(compileImageFileMenuItem);
+ compileImageFileMenuItem.addActionListener(this);
+ fileMenu.add(mergeHeatMapMenuItem);
+ mergeHeatMapMenuItem.addActionListener(this);
+
+ menuBar.add(fileMenu);
+
+ mainFrame.setJMenuBar(menuBar);
+
+ JPanel sidePanel = new JPanel();
+ sidePanel.setLayout(new BorderLayout());
+ JPanel videoPanel = GuiUtil.generatePanel("video");
+ imageVideoComponent.setImage(videoImage);
+ // ComponentUtil.setFixedWidth( imageVideoComponent , 400 );
+ videoPanel.add(GuiUtil.besidesPanel(imageVideoComponent));
+ videoPanel.add(GuiUtil.besidesPanel(videoTimeLabel));
+
+ sidePanel.add(setupPanel, BorderLayout.NORTH);
+ sidePanel.add(videoPanel, BorderLayout.CENTER);
+
+ mainFrame.getContentPane().setLayout(new BorderLayout());
+ mainFrame.getContentPane().add(sidePanel, BorderLayout.EAST);
+ mainFrame.getContentPane().add(legendLabel, BorderLayout.SOUTH);
+
+ mainFrame.getContentPane().add(scrollPane, BorderLayout.CENTER);
+ scrollPane.setPreferredSize(new Dimension(800, 450));
+
+ distance1TextField.setText("" + SEUIL_DISTANCE_1);
+ distance2TextField.setText("" + SEUIL_DISTANCE_2);
+ distanceHeadHeadTextField.setText("" + SEUIL_DISTANCE_HEAD_HEAD);
+ distanceHeadGenitalTextField.setText("" + SEUIL_DISTANCE_HEAD_GENITAL);
+ seuilSideTextField.setText("" + SEUIL_SIDE);
+ speed_threshold1TextField.setText("" + SPEED_THRESHOLD_1);
+ speed_threshold2TextField.setText("" + SPEED_THRESHOLD_2);
+ speed_threshold3TextField.setText("" + SPEED_THRESHOLD_3);
+ fpsTextField.setText("" + FPS);
+ // loadFrameStartTextField.setText( ""+LOAD_FRAME_START );
+ // loadFrameEndTextField.setText( ""+LOAD_FRAME_END );
+ computeImageStartMinuteTextField.setText("" + START_MINUTE);
+ computeImageNbMinuteTextField.setText("" + NB_MINUTE);
+
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Distance Threshold 1(closest) in px:"), distance1TextField));
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Distance Threshold 2 in px:"), distance2TextField));
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Distance Head-Head in px:"), distanceHeadHeadTextField));
+ setupPanel
+ .add(GuiUtil.besidesPanel(new JLabel("Distance Head-Genital 2 in px:"), distanceHeadGenitalTextField));
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Side detection Parameter in px:"), seuilSideTextField));
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Speed Threshold 1 (black) in px:"), speed_threshold1TextField));
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Speed Threshold 2 (gray) in px:"), speed_threshold2TextField));
+ setupPanel.add(
+ GuiUtil.besidesPanel(new JLabel("Speed Threshold 3 (lightgray) in px:"), speed_threshold3TextField));
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("FPS:"), fpsTextField));
+ // setupPanel.add( GuiUtil.besidesPanel( new JLabel("Load frame start:" ) , loadFrameStartTextField) );
+ // setupPanel.add( GuiUtil.besidesPanel( new JLabel("Load frame end:" ) , loadFrameEndTextField) );
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Computation Start Minute:"), computeImageStartMinuteTextField));
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Computation End Minute:"), computeImageNbMinuteTextField));
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Mouse Scale"), scaleTextField));
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Video Image display scale"), scaleVideoTextField));
+
+ setupPanel.add(GuiUtil.besidesPanel(refreshButton));
+ refreshButton.addActionListener(this);
+
+ scaleTextField.setFont(FontUtil.setStyle(scaleTextField.getFont(), Font.BOLD));
+
+ scaleTextField.addKeyListener(this);
+
+ mainFrame.pack();
+ mainFrame.center();
+ mainFrame.addToMainDesktopPane();
+ mainFrame.setVisible(true);
+
+ }
+
+ class MouseInfoRecord
+ {
+ boolean isGettingToOtherAndTouch = false;
+ boolean isEscapingFromOtherAndUnTouch = false;
+ boolean isEscaping = false;
+ boolean distanceIsInferiorToThreshold1 = false;
+ boolean isGoingToTheOther = false;
+ boolean mouseGetToOtherMouseAndEscapeInOut = false;
+ boolean mouseGetToOtherMouseAndOtherEscapeInOut = false;
+ boolean eventA = false;
+ boolean eventB = false;
+ boolean eventC = false;
+ boolean eventD = false;
+ float speed;
+ Point2D headPosition;
+ Point2D tailPosition;
+ Point2D bodyPosition;
+ public boolean distanceIsInferiorToThreshold2 = false;
+ public boolean isBehindTheOther = false;
+ public boolean isBesideTheOther = false;
+ public boolean thisHeadWithOtherGenitalContact = false;
+ }
+
+ public void openFile()
+ {
+ // load last preferences for loader.
+ JFileChooser fileChooser = new JFileChooser();
+ fileChooser.setMultiSelectionEnabled(true);
+ String node = "plugins/PhysicTracker/videolabelmaker/browser";
+
+ Preferences preferences = Preferences.userRoot().node(node);
+ String path = preferences.get("path", "");
+ fileChooser.setCurrentDirectory(new File(path));
+
+ int x = preferences.getInt("x", 0);
+ int y = preferences.getInt("y", 0);
+ int width = preferences.getInt("width", 400);
+ int height = preferences.getInt("height", 400);
+
+ fileChooser.setLocation(x, y);
+ fileChooser.setPreferredSize(new Dimension(width, height));
+
+ int returnValue = fileChooser.showDialog(null, "Load");
+ if (returnValue == JFileChooser.APPROVE_OPTION)
+ {
+ preferences.put("path", fileChooser.getCurrentDirectory().getAbsolutePath());
+ preferences.putInt("x", fileChooser.getX());
+ preferences.putInt("y", fileChooser.getY());
+ preferences.putInt("width", fileChooser.getWidth());
+ preferences.putInt("height", fileChooser.getHeight());
+
+ for (int i = 0; i < fileChooser.getSelectedFiles().length; i++)
+ {
+ if (fileChooser.getSelectedFiles()[i].getName().contains("extra"))
+ {
+ System.out.println(
+ "You are trying to load an extra xml file. Please load the original file instead.");
+ continue;
+ }
+
+ VideoLabelPanel videoLabelPanel = new VideoLabelPanel(fileChooser.getSelectedFiles()[i]);
+ mainPanel.add(videoLabelPanel.panel);
+ videoLabelPanelArrayList.add(videoLabelPanel);
+ mainPanel.add(new JPanel());
+ }
+
+ }
+ mainPanel.updateUI();
+ }
+
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+
+ if (e.getSource() == refreshButton)
+ {
+ try
+ {
+ SEUIL_DISTANCE_1 = Float.parseFloat(distance1TextField.getText());
+ SEUIL_DISTANCE_2 = Float.parseFloat(distance2TextField.getText());
+ SEUIL_DISTANCE_HEAD_HEAD = Float.parseFloat(distanceHeadHeadTextField.getText());
+
+ SEUIL_DISTANCE_HEAD_GENITAL = Float.parseFloat(distanceHeadGenitalTextField.getText());
+ SEUIL_SIDE = Float.parseFloat(seuilSideTextField.getText());
+ SPEED_THRESHOLD_1 = Float.parseFloat(speed_threshold1TextField.getText());
+ SPEED_THRESHOLD_2 = Float.parseFloat(speed_threshold2TextField.getText());
+ SPEED_THRESHOLD_3 = Float.parseFloat(speed_threshold3TextField.getText());
+ FPS = Float.parseFloat(fpsTextField.getText());
+ }
+ catch (NumberFormatException e1)
+ {
+ MessageDialog.showDialog(
+ "One of the parameters cannot be understand as a number. Please correct it and refresh again.",
+ MessageDialog.ERROR_MESSAGE);
+ return;
+ }
+ for (VideoLabelPanel vlp : videoLabelPanelArrayList)
+ {
+ if (!vlp.isFreezed())
+ {
+ vlp.buildResultImage();
+ }
+ }
+
+ double scaleVideo = 1;
+ try
+ {
+ scaleVideo = Double.parseDouble(scaleVideoTextField.getText());
+ }
+ catch (Exception e1)
+ {
+ // the field is incorrect.
+ }
+
+ imageVideoComponent.setZoom(scaleVideo);
+
+ }
+
+ if (e.getSource() == openFileMenuItem)
+ {
+ openFile();
+ }
+
+ if (e.getSource() == compileImageFileMenuItem)
+ {
+ compileImageFile();
+ }
+
+ if (e.getSource() == mergeHeatMapMenuItem)
+ {
+ mergeHeatMapDirectory();
+ }
+
+ }
+
+ private void mergeHeatMapDirectory()
+ {
+
+ JFileChooser fileChooser = new JFileChooser();
+ fileChooser.setMultiSelectionEnabled(true);
+
+ String node = "plugins/PhysicTracker/videolabelmaker/browser";
+
+ Preferences preferences = Preferences.userRoot().node(node);
+ String path = preferences.get("path", "");
+ fileChooser.setCurrentDirectory(new File(path));
+
+ int returnValue = fileChooser.showDialog(null, "Load heatmap files");
+ if (returnValue == JFileChooser.APPROVE_OPTION)
+ {
+ IcyBufferedImage resultImage = new IcyBufferedImage(1, 1, 4, DataType.USHORT);
+
+ for (int i = 0; i < fileChooser.getSelectedFiles().length; i++)
+ {
+ File file = fileChooser.getSelectedFiles()[i];
+ if (file.getAbsolutePath().toLowerCase().endsWith("heatmap.tif"))
+ {
+ java.awt.Point copyPoint = new java.awt.Point(resultImage.getWidth(), 0);
+ System.out.println("Loading file " + file.getAbsolutePath());
+ Sequence sequence = Loader.loadSequence(file.getAbsolutePath(), 0, false);
+
+ // write sequence file name in image.
+ Graphics2D g = (Graphics2D) sequence.getFirstImage().getGraphics();
+ g.setColor(Color.white);
+ g.setFont(new Font("Arial", Font.PLAIN, 12));
+ g.drawString(FileUtil.getFileName(file.getAbsolutePath(), false), 0, 15);
+
+ int newHeight = Math.max(resultImage.getHeight(), sequence.getHeight());
+ resultImage = IcyBufferedImageUtil.scale(resultImage, resultImage.getWidth() + sequence.getWidth(),
+ newHeight, false, SwingConstants.LEFT, SwingConstants.TOP);
+
+ resultImage.copyData(sequence.getFirstImage(), null, copyPoint);
+
+ }
+ }
+
+ // save stitched sequence
+
+ Sequence outputSequence = new Sequence(resultImage);
+ File outFile = new File(FileUtil.getDirectory(fileChooser.getSelectedFile().getAbsolutePath())
+ + FileUtil.separator + "heatmap stitched.tif");
+
+ new AnnounceFrame("Saving stitched heatmap to file " + outFile.getAbsolutePath(), 5);
+ Saver.save(outputSequence, outFile);
+
+ // load files
+ /*
+ * for ( int i = 0 ; i < fileChooser.getSelectedFiles().length ; i++ )
+ * {
+ * try {
+ * BufferedImage bi = ImageIO.read( fileChooser.getSelectedFiles()[i] );
+ * fileImageHashMap.put( fileChooser.getSelectedFiles()[i] , bi );
+ *
+ * } catch (IOException e1) {
+ * e1.printStackTrace();
+ * }
+ *
+ * fileArray.add( fileChooser.getSelectedFiles()[i] );
+ * }
+ */
+ }
+
+ }
+
+ private void compileImageFile()
+ {
+
+ JFileChooser fileChooser = new JFileChooser();
+ fileChooser.setMultiSelectionEnabled(true);
+ int returnValue = fileChooser.showDialog(null, "Load");
+ if (returnValue == JFileChooser.APPROVE_OPTION)
+ {
+
+ ArrayList<File> fileArray = new ArrayList<File>();
+ HashMap<File, BufferedImage> fileImageHashMap = new HashMap<File, BufferedImage>();
+
+ // load files
+
+ for (int i = 0; i < fileChooser.getSelectedFiles().length; i++)
+ {
+ try
+ {
+ BufferedImage bi = ImageIO.read(fileChooser.getSelectedFiles()[i]);
+ fileImageHashMap.put(fileChooser.getSelectedFiles()[i], bi);
+
+ }
+ catch (IOException e1)
+ {
+ e1.printStackTrace();
+ }
+
+ fileArray.add(fileChooser.getSelectedFiles()[i]);
+ }
+
+ // pack files.
+
+ int NB_TOTAL_CRITERIA = 28;
+
+ for (int criteria = 0; criteria < NB_TOTAL_CRITERIA; criteria++)
+ {
+ // look for maxWidth.
+
+ int maxWidth = 0;
+ int nbFileMatching = 0;
+
+ String tokenToLook = ".criteria_" + criteria + ".png";
+ for (File file : fileArray)
+ {
+ if (file.getAbsoluteFile().toString().contains(tokenToLook))
+ {
+ nbFileMatching++;
+ int w = fileImageHashMap.get(file).getWidth();
+ // System.out.println("current w : " + w );
+ if (w > maxWidth)
+ maxWidth = w;
+ }
+ }
+
+ System.out.println("Max Width : " + maxWidth);
+
+ // create targetImage
+ if (nbFileMatching == 0)
+ {
+ new ToolTipFrame(
+ "<html>No file matching .criteria_XX.png found in the list of file provided.<br>Create those images by clicking the save button<br>on each XML panel</html>");
+ return;
+ }
+ ;
+ BufferedImage image2 = new BufferedImage(maxWidth, stepY * nbFileMatching, BufferedImage.TYPE_INT_BGR);
+ Graphics2D targetG = (Graphics2D) image2.getGraphics();
+
+ int currentY = 0;
+ for (File file : fileArray)
+ {
+ if (file.getAbsoluteFile().toString().contains(tokenToLook))
+ {
+ BufferedImage bi = fileImageHashMap.get(file);
+ targetG.drawImage(bi, null, 0, currentY);
+ if (criteria == 2)
+ {
+ targetG.setColor(Color.black);
+ targetG.drawString(file.getAbsoluteFile().toString(), 400, currentY + stepY / 2);
+ }
+ currentY += bi.getHeight();
+ }
+ }
+
+ try
+ {
+
+ String fileName = fileChooser.getSelectedFile().getParent() + "\\__crit_" + criteria + ".png";
+ System.out.println("Saving : " + fileName);
+ ImageIO.write(image2, "png", new File(fileName));
+
+ }
+ catch (IOException e1)
+ {
+ e1.printStackTrace();
+ }
+
+ }
+ }
+
+ System.out.println("Finished.");
+
+ }
+
+ ArrayList<VideoLabelPanel> videoLabelPanelArrayList = new ArrayList<VideoLabelPanel>();
+
+ public class ImageComponent extends JPanel implements MouseMotionListener, MouseListener
+ {
+ private static final long serialVersionUID = -5907107709763419248L;
+ BufferedImage image;
+ ArrayList<String> stringList = new ArrayList<String>();
+ double zoom = 1;
+
+ public void setZoom(double zoom)
+ {
+ this.zoom = zoom;
+ // System.out.println("zoom:"+zoom);
+ updateUI();
+ }
+
+ public ImageComponent()
+ {
+ // this.showDot = showDot;
+ }
+
+ public void setImage(BufferedImage image)
+ {
+ this.image = image;
+ this.setPreferredSize(new Dimension((int) (image.getWidth() * zoom), (int) (image.getHeight() * zoom)));
+ repaint();
+ this.addMouseMotionListener(this);
+ this.addMouseListener(this);
+ }
+
+ int y = 0;
+ int x = 0;
+ // boolean showDot = false;
+
+ @Override
+ protected void paintComponent(Graphics g)
+ {
+
+ super.paintComponent(g);
+
+ Graphics2D g2 = (Graphics2D) g;
+
+ if (image != null)
+ {
+ g2.scale(zoom, zoom);
+ g2.drawImage(image, null, 0, 0);
+
+ if (stringList.size() != 0)
+ {
+ float dash[] = {10.0f};
+ g2.setStroke(
+ new BasicStroke(1.0f, BasicStroke.CAP_BUTT, BasicStroke.JOIN_MITER, 10.0f, dash, 0.0f));
+ g2.drawLine(x, 0, x, image.getHeight());
+ }
+ }
+ }
+
+ @Override
+ public void mouseDragged(MouseEvent e)
+ {
+ x = e.getX();
+ repaint();
+ }
+
+ @Override
+ public void mouseMoved(MouseEvent e)
+ {
+
+ x = e.getX();
+
+ int index = e.getY() / stepY;
+ if (stringList.size() > index)
+ {
+ String string = stringList.get(index);
+ if (string != null)
+ {
+ legendLabel.setText(string);
+ }
+ }
+ }
+
+ @Override
+ public void mouseClicked(MouseEvent e)
+ {
+ x = e.getX();
+ repaint();
+ }
+
+ @Override
+ public void mouseEntered(MouseEvent e)
+ {
+ }
+
+ @Override
+ public void mouseExited(MouseEvent e)
+ {
+ }
+
+ @Override
+ public void mousePressed(MouseEvent e)
+ {
+ }
+
+ @Override
+ public void mouseReleased(MouseEvent e)
+ {
+ }
+
+ }
+
+ public class VideoLabelPanel implements ActionListener, MouseListener, MouseMotionListener
+ {
+
+ JPanel panel = null;
+
+ int firstFrame;
+ int lastFrame;
+
+ HashMap<Integer, MouseInfoRecord> mouseARecord = new HashMap<Integer, MouseInfoRecord>();
+ HashMap<Integer, MouseInfoRecord> mouseBRecord = new HashMap<Integer, MouseInfoRecord>();
+
+ int xPixelPetT = 1;
+
+ BufferedImage imageChrono = new BufferedImage(100, 100, BufferedImage.TYPE_INT_BGR);
+ ImageIcon imageIcon;
+ ImageComponent imageComponent = new ImageComponent();
+ JButton saveImageButton = new JButton("Save Chrono Image");
+ JButton exportEventsAsXML = new JButton("Export Events as XML");
+ JButton exportSpeedButton = new JButton("Export speed and distance");
+ // freeze settings: The scale and all the info are not propagated to this animal if the freeze is on.
+ JCheckBox freezeSettingsCheckBox = new JCheckBox("freeze settings");
-public class MiceProfilerVideoLabelMaker extends Plugin implements PluginImageAnalysis , ActionListener, KeyListener {
-
- JPanel mainPanel = new JPanel();
- IcyFrame mainFrame = new IcyFrame( "Video Label Maker" , true , true ,true ,true );
- JMenuBar menuBar = new JMenuBar();
- JMenuItem openFileMenuItem = new JMenuItem("Open XML File...");
- JMenuItem compileImageFileMenuItem = new JMenuItem("Compile image files from a list of file...");
- JMenuItem mergeHeatMapMenuItem = new JMenuItem("Stitch heatmap files...");
-
- JScrollPane scrollPane = new JScrollPane( mainPanel );
- JPanel setupPanel = GuiUtil.generatePanel("Setup");
- JLabel legendLabel = new JLabel("Legend" , JLabel.CENTER );
- JTextField scaleTextField = new JTextField("0.22");
- JTextField scaleVideoTextField = new JTextField("1");
-
- int START_MINUTE = 0;
- int NB_MINUTE = 8;
-
- float SEUIL_DISTANCE_1 = 22;
- float SEUIL_DISTANCE_2 = 40;
- float SEUIL_DISTANCE_HEAD_HEAD = 15;
- float SEUIL_DISTANCE_HEAD_GENITAL = 15;
- float SEUIL_SIDE = 12;
- float SPEED_THRESHOLD_1 = (float) 0.5f;
- float SPEED_THRESHOLD_2 = 2;
- float SPEED_THRESHOLD_3 = 4;
- float FPS = 15f;
- float LOAD_FRAME_START = 0f;
- float LOAD_FRAME_END = 10000000f;
- float SCALE = 0.22f;
-
- JTextField distance1TextField = new JTextField();
- JTextField distance2TextField = new JTextField();
- JTextField distanceHeadHeadTextField = new JTextField();
- JTextField distanceHeadGenitalTextField = new JTextField();
- JTextField seuilSideTextField = new JTextField();
- JTextField speed_threshold1TextField = new JTextField();
- JTextField speed_threshold2TextField = new JTextField();
- JTextField speed_threshold3TextField = new JTextField();
- JTextField fpsTextField = new JTextField();
-// JTextField loadFrameStartTextField = new JTextField();
-// JTextField loadFrameEndTextField = new JTextField();
- JTextField computeImageStartMinuteTextField = new JTextField();
- JTextField computeImageNbMinuteTextField = new JTextField();
- JButton refreshButton = new JButton("Refresh Data with new parameters");
-
- BufferedImage videoImage = new BufferedImage( 200 , 200 , BufferedImage.TYPE_INT_BGR );
- ImageComponent imageVideoComponent = new ImageComponent();
- JLabel videoTimeLabel = new JLabel("", JLabel.CENTER );
- int stepY = 15;
-
- @Override
- public void compute() {
-
- mainFrame.pack();
-
- mainPanel.setLayout( new BoxLayout( mainPanel , BoxLayout.Y_AXIS ) );
-
- videoTimeLabel.setFont( new Font( "Arial" , Font.BOLD , 15 ) );
- legendLabel.setFont( new Font( "Arial" , Font.BOLD , 20 ) );
-
- JMenu fileMenu = new JMenu("File");
- fileMenu.add( openFileMenuItem );
- openFileMenuItem.addActionListener( this );
- fileMenu.addSeparator();
- fileMenu.add( compileImageFileMenuItem );
- compileImageFileMenuItem.addActionListener( this );
- fileMenu.add( mergeHeatMapMenuItem );
- mergeHeatMapMenuItem.addActionListener( this );
-
- menuBar.add( fileMenu );
-
- mainFrame.setJMenuBar( menuBar );
-
- JPanel sidePanel = new JPanel( );
- sidePanel.setLayout( new BorderLayout () );
- JPanel videoPanel = GuiUtil.generatePanel("video");
- imageVideoComponent.setImage( videoImage );
- //ComponentUtil.setFixedWidth( imageVideoComponent , 400 );
- videoPanel.add( GuiUtil.besidesPanel( imageVideoComponent ) );
- videoPanel.add( GuiUtil.besidesPanel( videoTimeLabel ) );
-
- sidePanel.add( setupPanel , BorderLayout.NORTH );
- sidePanel.add( videoPanel , BorderLayout.CENTER );
-
-
-
- mainFrame.getContentPane().setLayout( new BorderLayout() );
- mainFrame.getContentPane().add( sidePanel , BorderLayout.EAST );
- mainFrame.getContentPane().add( legendLabel , BorderLayout.SOUTH );
-
- mainFrame.getContentPane().add( scrollPane , BorderLayout.CENTER );
- scrollPane.setPreferredSize( new Dimension(800,450));
-
- distance1TextField.setText( ""+SEUIL_DISTANCE_1 );
- distance2TextField.setText( ""+SEUIL_DISTANCE_2 );
- distanceHeadHeadTextField.setText( ""+SEUIL_DISTANCE_HEAD_HEAD );
- distanceHeadGenitalTextField.setText( ""+SEUIL_DISTANCE_HEAD_GENITAL );
- seuilSideTextField.setText( ""+SEUIL_SIDE );
- speed_threshold1TextField.setText( ""+SPEED_THRESHOLD_1 );
- speed_threshold2TextField.setText( ""+SPEED_THRESHOLD_2 );
- speed_threshold3TextField.setText( ""+SPEED_THRESHOLD_3 );
- fpsTextField.setText( ""+FPS );
-// loadFrameStartTextField.setText( ""+LOAD_FRAME_START );
-// loadFrameEndTextField.setText( ""+LOAD_FRAME_END );
- computeImageStartMinuteTextField.setText( "" + START_MINUTE );
- computeImageNbMinuteTextField.setText("" + NB_MINUTE );
-
-
- setupPanel.add( GuiUtil.besidesPanel( new JLabel("Distance Threshold 1(closest) in px:" ) , distance1TextField) );
- setupPanel.add( GuiUtil.besidesPanel( new JLabel("Distance Threshold 2 in px:" ) , distance2TextField) );
- setupPanel.add( GuiUtil.besidesPanel( new JLabel("Distance Head-Head in px:" ) , distanceHeadHeadTextField) );
- setupPanel.add( GuiUtil.besidesPanel( new JLabel("Distance Head-Genital 2 in px:" ) , distanceHeadGenitalTextField) );
- setupPanel.add( GuiUtil.besidesPanel( new JLabel("Side detection Parameter in px:" ) , seuilSideTextField) );
- setupPanel.add( GuiUtil.besidesPanel( new JLabel("Speed Threshold 1 (black) in px:" ) , speed_threshold1TextField) );
- setupPanel.add( GuiUtil.besidesPanel( new JLabel("Speed Threshold 2 (gray) in px:" ) , speed_threshold2TextField) );
- setupPanel.add( GuiUtil.besidesPanel( new JLabel("Speed Threshold 3 (lightgray) in px:" ) , speed_threshold3TextField) );
- setupPanel.add( GuiUtil.besidesPanel( new JLabel("FPS:" ) , fpsTextField) );
-// setupPanel.add( GuiUtil.besidesPanel( new JLabel("Load frame start:" ) , loadFrameStartTextField) );
-// setupPanel.add( GuiUtil.besidesPanel( new JLabel("Load frame end:" ) , loadFrameEndTextField) );
- setupPanel.add( GuiUtil.besidesPanel( new JLabel("Computation Start Minute:" ) , computeImageStartMinuteTextField ));
- setupPanel.add( GuiUtil.besidesPanel( new JLabel("Computation End Minute:" ) ,computeImageNbMinuteTextField ));
- setupPanel.add( GuiUtil.besidesPanel( new JLabel("Mouse Scale" ) ,scaleTextField ));
- setupPanel.add( GuiUtil.besidesPanel( new JLabel("Video Image display scale" ) ,scaleVideoTextField ));
-
- setupPanel.add( GuiUtil.besidesPanel( refreshButton ) );
- refreshButton.addActionListener( this );
-
- scaleTextField.setFont( FontUtil.setStyle( scaleTextField.getFont() , Font.BOLD ) );
-
- scaleTextField.addKeyListener( this );
-
- mainFrame.pack();
- mainFrame.center();
- mainFrame.addToMainDesktopPane();
- mainFrame.setVisible( true );
-
- }
-
- class MouseInfoRecord
- {
- boolean isGettingToOtherAndTouch = false;
- boolean isEscapingFromOtherAndUnTouch = false;
- boolean isEscaping = false;
- boolean distanceIsInferiorToThreshold1 = false;
- boolean isGoingToTheOther = false;
- boolean mouseGetToOtherMouseAndEscapeInOut = false;
- boolean mouseGetToOtherMouseAndOtherEscapeInOut = false;
- boolean eventA = false;
- boolean eventB = false;
- boolean eventC = false;
- boolean eventD = false;
- float speed;
- Point2D headPosition;
- Point2D tailPosition;
- Point2D bodyPosition;
- public boolean distanceIsInferiorToThreshold2 = false;
- public boolean isBehindTheOther = false;
- public boolean isBesideTheOther = false;
- public boolean thisHeadWithOtherGenitalContact = false;
- }
-
- public void openFile()
- {
- // load last preferences for loader.
- JFileChooser fileChooser = new JFileChooser();
- fileChooser.setMultiSelectionEnabled( true );
- String node = "plugins/PhysicTracker/videolabelmaker/browser";
-
- Preferences preferences = Preferences.userRoot().node( node );
- String path = preferences.get( "path" , "" );
- fileChooser.setCurrentDirectory( new File(path) );
-
- int x = preferences.getInt( "x" , 0 );
- int y = preferences.getInt( "y" , 0 );
- int width = preferences.getInt( "width" , 400 );
- int height = preferences.getInt( "height" , 400 );
-
- fileChooser.setLocation( x , y );
- fileChooser.setPreferredSize( new Dimension( width , height ) );
-
- int returnValue = fileChooser.showDialog( null , "Load" );
- if( returnValue == JFileChooser.APPROVE_OPTION )
- {
- preferences.put( "path", fileChooser.getCurrentDirectory().getAbsolutePath() );
- preferences.putInt( "x" , fileChooser.getX() );
- preferences.putInt( "y" , fileChooser.getY() );
- preferences.putInt( "width" , fileChooser.getWidth() );
- preferences.putInt( "height" , fileChooser.getHeight() );
-
- for ( int i = 0 ; i < fileChooser.getSelectedFiles().length ; i++ )
- {
- if ( fileChooser.getSelectedFiles()[i].getName().contains("extra") )
- {
- System.out.println("You are trying to load an extra xml file. Please load the original file instead.");
- continue;
- }
-
- VideoLabelPanel videoLabelPanel = new VideoLabelPanel( fileChooser.getSelectedFiles()[i] );
- mainPanel.add( videoLabelPanel.panel );
- videoLabelPanelArrayList.add( videoLabelPanel );
- mainPanel.add( new JPanel() );
- }
-
- }
- mainPanel.updateUI();
- }
-
- @Override
- public void actionPerformed(ActionEvent e)
- {
-
-
- if ( e.getSource() == refreshButton )
- {
- try
- {
- SEUIL_DISTANCE_1 = Float.parseFloat( distance1TextField.getText() );
- SEUIL_DISTANCE_2 = Float.parseFloat( distance2TextField.getText() );
- SEUIL_DISTANCE_HEAD_HEAD = Float.parseFloat( distanceHeadHeadTextField.getText() );
-
- SEUIL_DISTANCE_HEAD_GENITAL = Float.parseFloat( distanceHeadGenitalTextField.getText() );
- SEUIL_SIDE = Float.parseFloat( seuilSideTextField.getText() );
- SPEED_THRESHOLD_1 = Float.parseFloat( speed_threshold1TextField.getText() );
- SPEED_THRESHOLD_2 = Float.parseFloat( speed_threshold2TextField.getText() );
- SPEED_THRESHOLD_3 = Float.parseFloat( speed_threshold3TextField.getText() );
- FPS = Float.parseFloat(fpsTextField.getText() );
- }
- catch ( NumberFormatException e1 )
- {
- MessageDialog.showDialog( "One of the parameters cannot be understand as a number. Please correct it and refresh again.", MessageDialog.ERROR_MESSAGE );
- return;
- }
- for ( VideoLabelPanel vlp: videoLabelPanelArrayList )
- {
- if ( !vlp.isFreezed() )
- {
- vlp.buildResultImage();
- }
- }
-
- double scaleVideo = 1;
- try{
- scaleVideo = Double.parseDouble( scaleVideoTextField.getText() );
- }catch(Exception e1)
- {
- // the field is incorrect.
- }
-
- imageVideoComponent.setZoom( scaleVideo ) ;
-
- }
-
- if ( e.getSource() == openFileMenuItem )
- {
- openFile();
- }
-
- if ( e.getSource() == compileImageFileMenuItem )
- {
- compileImageFile();
- }
-
- if ( e.getSource() == mergeHeatMapMenuItem )
- {
- mergeHeatMapDirectory();
- }
-
-
-
- }
-
- private void mergeHeatMapDirectory() {
-
- JFileChooser fileChooser = new JFileChooser();
- fileChooser.setMultiSelectionEnabled( true );
-
- String node = "plugins/PhysicTracker/videolabelmaker/browser";
-
- Preferences preferences = Preferences.userRoot().node( node );
- String path = preferences.get( "path" , "" );
- fileChooser.setCurrentDirectory( new File(path) );
-
- int returnValue = fileChooser.showDialog( null , "Load heatmap files" );
- if( returnValue == JFileChooser.APPROVE_OPTION )
- {
- IcyBufferedImage resultImage = new IcyBufferedImage( 1, 1, 4, DataType.USHORT );
-
- for ( int i = 0 ; i < fileChooser.getSelectedFiles().length ; i++ )
- {
- File file = fileChooser.getSelectedFiles()[i];
- if ( file.getAbsolutePath().toLowerCase().endsWith( "heatmap.tif" ) )
- {
- java.awt.Point copyPoint = new java.awt.Point( resultImage.getWidth() , 0 );
- System.out.println( "Loading file "+ file.getAbsolutePath() );
- Sequence sequence = Loader.loadSequence( file.getAbsolutePath() , 0, false );
-
- // write sequence file name in image.
- Graphics2D g = (Graphics2D) sequence.getFirstImage().getGraphics();
- g.setColor( Color.white );
- g.setFont( new Font("Arial" , Font.PLAIN, 12 ));
- g.drawString( FileUtil.getFileName( file.getAbsolutePath(), false )
- , 0, 15 );
-
- int newHeight = Math.max( resultImage.getHeight() , sequence.getHeight() );
- resultImage = IcyBufferedImageUtil.scale( resultImage,
- resultImage.getWidth() + sequence.getWidth(),
- newHeight,
- false, SwingConstants.LEFT, SwingConstants.TOP );
-
- resultImage.copyData( sequence.getFirstImage() , null , copyPoint );
-
-
-
- }
- }
-
- // save stitched sequence
-
- Sequence outputSequence = new Sequence( resultImage );
- File outFile = new File( FileUtil.getDirectory( fileChooser.getSelectedFile().getAbsolutePath() ) + FileUtil.separator + "heatmap stitched.tif" );
-
- new AnnounceFrame( "Saving stitched heatmap to file " + outFile.getAbsolutePath() , 5 );
- Saver.save( outputSequence , outFile );
-
-
-
-
-
- // load files
-/*
- for ( int i = 0 ; i < fileChooser.getSelectedFiles().length ; i++ )
- {
- try {
- BufferedImage bi = ImageIO.read( fileChooser.getSelectedFiles()[i] );
- fileImageHashMap.put( fileChooser.getSelectedFiles()[i] , bi );
-
- } catch (IOException e1) {
- e1.printStackTrace();
- }
-
- fileArray.add( fileChooser.getSelectedFiles()[i] );
- }
-*/
- }
-
- }
-
- private void compileImageFile() {
-
- JFileChooser fileChooser = new JFileChooser();
- fileChooser.setMultiSelectionEnabled( true );
- int returnValue = fileChooser.showDialog( null , "Load" );
- if( returnValue == JFileChooser.APPROVE_OPTION )
- {
-
- ArrayList<File> fileArray = new ArrayList<File>();
- HashMap<File, BufferedImage> fileImageHashMap = new HashMap<File, BufferedImage>();
-
- // load files
-
- for ( int i = 0 ; i < fileChooser.getSelectedFiles().length ; i++ )
- {
- try {
- BufferedImage bi = ImageIO.read( fileChooser.getSelectedFiles()[i] );
- fileImageHashMap.put( fileChooser.getSelectedFiles()[i] , bi );
-
- } catch (IOException e1) {
- e1.printStackTrace();
- }
-
- fileArray.add( fileChooser.getSelectedFiles()[i] );
- }
-
- // pack files.
-
- int NB_TOTAL_CRITERIA = 28;
-
- for ( int criteria = 0 ; criteria < NB_TOTAL_CRITERIA ; criteria++ )
- {
- // look for maxWidth.
-
- int maxWidth = 0;
- int nbFileMatching = 0;
-
- String tokenToLook = ".criteria_" + criteria +".png";
- for ( File file : fileArray )
- {
- if ( file.getAbsoluteFile().toString().contains( tokenToLook ) )
- {
- nbFileMatching++;
- int w = fileImageHashMap.get( file ).getWidth();
- //System.out.println("current w : " + w );
- if ( w > maxWidth ) maxWidth = w;
- }
- }
-
- System.out.println("Max Width : " + maxWidth );
-
- // create targetImage
- if ( nbFileMatching == 0 ) { new ToolTipFrame("<html>No file matching .criteria_XX.png found in the list of file provided.<br>Create those images by clicking the save button<br>on each XML panel</html>"); return; };
- BufferedImage image2 = new BufferedImage( maxWidth, stepY*nbFileMatching , BufferedImage.TYPE_INT_BGR );
- Graphics2D targetG = (Graphics2D) image2.getGraphics();
-
- int currentY = 0;
- for ( File file : fileArray )
- {
- if ( file.getAbsoluteFile().toString().contains( tokenToLook ) )
- {
- BufferedImage bi = fileImageHashMap.get( file );
- targetG.drawImage( bi , null, 0 , currentY );
- if ( criteria == 2 )
- {
- targetG.setColor( Color.black );
- targetG.drawString( file.getAbsoluteFile().toString() , 400 , currentY + stepY/2 );
- }
- currentY+= bi.getHeight();
- }
- }
-
- try {
-
- String fileName = fileChooser.getSelectedFile().getParent()+"\\__crit_"+criteria+".png";
- System.out.println("Saving : " + fileName );
- ImageIO.write(image2, "png", new File( fileName ) );
-
- } catch (IOException e1) {
- e1.printStackTrace();
- }
-
-
- }
- }
-
-
- System.out.println("Finished.");
-
-
- }
-
- ArrayList<VideoLabelPanel> videoLabelPanelArrayList = new ArrayList<VideoLabelPanel>();
-
- public class ImageComponent extends JPanel implements MouseMotionListener , MouseListener
- {
- private static final long serialVersionUID = -5907107709763419248L;
- BufferedImage image;
- ArrayList<String> stringList = new ArrayList<String>();
- double zoom = 1;
-
- public void setZoom( double zoom )
- {
- this.zoom = zoom;
- //System.out.println("zoom:"+zoom);
- updateUI();
- }
-
- public ImageComponent( )
- {
- //this.showDot = showDot;
- }
-
- public void setImage(BufferedImage image) {
- this.image = image;
- this.setPreferredSize( new Dimension( (int)(image.getWidth() * zoom) , (int)(image.getHeight() * zoom) ) );
- repaint();
- this.addMouseMotionListener( this );
- this.addMouseListener( this );
- }
-
-
- int y = 0;
- int x = 0;
- //boolean showDot = false;
-
- @Override
- protected void paintComponent(Graphics g) {
-
- super.paintComponent( g );
-
- Graphics2D g2 = (Graphics2D) g;
-
- if ( image !=null )
- {
- g2.scale( zoom , zoom );
- g2.drawImage( image , null , 0, 0 );
-
- if ( stringList.size() != 0 )
- {
- float dash[] = { 10.0f };
- g2.setStroke(new BasicStroke(1.0f, BasicStroke.CAP_BUTT,
- BasicStroke.JOIN_MITER, 10.0f, dash, 0.0f));
- g2.drawLine( x , 0 , x , image.getHeight() );
- }
- }
- }
-
- @Override
- public void mouseDragged(MouseEvent e) {
- x = e.getX();
- repaint();
- }
-
- @Override
- public void mouseMoved(MouseEvent e) {
-
- x = e.getX();
-
- int index = e.getY() /stepY;
- if ( stringList.size() > index )
- {
- String string = stringList.get( index );
- if ( string!=null )
- {
- legendLabel.setText( string );
- }
- }
- }
-
- @Override
- public void mouseClicked(MouseEvent e) {
- x = e.getX();
- repaint();
- }
- @Override
- public void mouseEntered(MouseEvent e) {}
- @Override
- public void mouseExited(MouseEvent e) {}
- @Override
- public void mousePressed(MouseEvent e) {}
- @Override
- public void mouseReleased(MouseEvent e) {}
-
-
-
-
-
-
-
- }
-
-
- public class VideoLabelPanel implements ActionListener , MouseListener , MouseMotionListener {
-
- JPanel panel = null;
-
-
- int firstFrame ;
- int lastFrame ;
-
- HashMap<Integer,MouseInfoRecord > mouseARecord = new HashMap<Integer, MouseInfoRecord >();
- HashMap<Integer,MouseInfoRecord > mouseBRecord = new HashMap<Integer, MouseInfoRecord >();
-
- int xPixelPetT = 1;
-
- BufferedImage imageChrono = new BufferedImage( 100 , 100 , BufferedImage.TYPE_INT_BGR );
- ImageIcon imageIcon;
- ImageComponent imageComponent = new ImageComponent();
- JButton saveImageButton = new JButton("Save Chrono Image");
- JButton exportEventsAsXML = new JButton( "Export Events as XML");
- JButton exportSpeedButton = new JButton("Export speed and distance");
- // freeze settings: The scale and all the info are not propagated to this animal if the freeze is on.
- JCheckBox freezeSettingsCheckBox = new JCheckBox("freeze settings");
-
- JButton computeVisionInFollowButton = new JButton("Export follow vision graph");
- JButton computeVisionWhenStoppedButton = new JButton("Export stop vision graph");
-
- JButton computeLocationHeatMapButton = new JButton("Create location heat map");
-
- JButton computeUSVStat = new JButton ( "Create USV stat");
-
- File file;
- File extraXMLFile; // contains extra labels to include to this video.
- File videoFile;
- FrameAccess frameAccess;
- Animal animal = null;
- SwimmingObject swimmingObject = null;
-
- public VideoLabelPanel( File fileXML ) {
-
- computeVisionInFollowButton.setToolTipText("Location of I in the vision of R (R following)");
- computeVisionWhenStoppedButton.setToolTipText("Location of I in the vision of R (R stopped)" );
-
- JPanel sidePanel2 = GuiUtil.generatePanel("Video");
-
- // check if the user is trying to load an avi file, and switch extension to XML if this is the case.
- if ( FileUtil.getFileExtension( fileXML.getAbsolutePath() , false ).toLowerCase().equals("avi") )
- {
- System.out.println("Avi loaded. Switching to XML.");
- fileXML = new File ( FileUtil.setExtension( fileXML.getAbsolutePath(), ".avi.xml" ) );
- System.out.println("XML file name is : " + fileXML.getAbsolutePath() );
- }
-
- this.file = fileXML;
-
-
- panel = GuiUtil.generatePanel( fileXML.getAbsolutePath() );
-
- panel.setLayout( new BorderLayout() );
-
- sidePanel2.add( GuiUtil.besidesPanel( saveImageButton ) );
- sidePanel2.add( GuiUtil.besidesPanel( exportEventsAsXML ) );
- sidePanel2.add( GuiUtil.besidesPanel( exportSpeedButton ) );
- sidePanel2.add( GuiUtil.besidesPanel( computeVisionInFollowButton ) );
- sidePanel2.add( GuiUtil.besidesPanel( computeVisionWhenStoppedButton ) );
- sidePanel2.add( GuiUtil.besidesPanel( computeLocationHeatMapButton ) );
- sidePanel2.add( GuiUtil.besidesPanel( computeUSVStat ) );
-
- freezeSettingsCheckBox.setSelected( false );
- sidePanel2.add( GuiUtil.besidesPanel( freezeSettingsCheckBox ) );
-
-
- computeVisionInFollowButton.addActionListener( this );
- computeVisionWhenStoppedButton.addActionListener( this );
- computeLocationHeatMapButton.addActionListener( this );
- computeUSVStat.addActionListener( this );
- exportEventsAsXML.addActionListener( this );
-
- panel.add(sidePanel2 , BorderLayout.CENTER );
- saveImageButton.addActionListener( this );
- exportSpeedButton.addActionListener( this );
-
- loadXML( fileXML );
-
-
- panel.add( imageComponent , BorderLayout.EAST );
-
- imageComponent.setImage( imageChrono );
-
- imageComponent.addMouseListener( this );
- imageComponent.addMouseMotionListener( this );
-
- buildResultImage();
-
-
-
- }
-
- public boolean isFreezed() {
- return freezeSettingsCheckBox.isSelected();
- }
-
- DecimalFormat decimalFormat = new DecimalFormat("00");
-
- class Periode
- {
- int start;
- int end;
- public int length()
- {
- return end-start;
- }
- MouseEventType mouseEvent;
- }
-
- String nbFrameToDisplayInSecond( float value )
- {
- value = ( int ) ( ( 10f * value ) / FPS ) / 10f;
- return ""+value+"s";
- }
-
-
- double demiVisionDeSouris = 2f * Math.PI / 3f ;
-
- /**
- * @return This function search for the first frame recorded in the XML file.
- * It then shift all data to remove all zero data at the beginning of the sequence.
- */
- public int trimAnalysisRecord()
- {
- // look at max t val.
-
- int tMin = Integer.MAX_VALUE;
- int tMax = 0;
- {
- Iterator<Integer> integerIterator = mouseARecord.keySet().iterator();
- while ( integerIterator.hasNext() )
- {
- int val = integerIterator.next();
- if ( val > tMax ) tMax = val;
- if ( val < tMin ) tMin = val;
- }
- }
- {
- Iterator<Integer> integerIterator = mouseBRecord.keySet().iterator();
- while ( integerIterator.hasNext() )
- {
- int val = integerIterator.next();
- if ( val > tMax ) tMax = val;
- if ( val < tMin ) tMin = val;
- }
- }
-
- HashMap<Integer,MouseInfoRecord > mouseARecordReSorted = new HashMap<Integer, MouseInfoRecord >();
- HashMap<Integer,MouseInfoRecord > mouseBRecordReSorted = new HashMap<Integer, MouseInfoRecord >();
-
- // shift the data
- if ( tMin != 0 )
- {
- {
- boolean warningHasBeenDisplayed = false;
- // System.out.println("Shifting data");
- for ( int t = tMin ; t< tMax ; t++ )
- {
- MouseInfoRecord a = mouseARecord.get( t );
- MouseInfoRecord b = mouseBRecord.get( t );
- if ( (a == null ) || (b == null) )
- {
- // +" \n\n Re start the tracker to perform the tracking on this frame.
- String problem = "A tracking frame is missing at t=" +t +" in file "+ this.file +".";
- System.out.println( problem );
- if ( !warningHasBeenDisplayed )
- {
- MessageDialog.showDialog( "<html><center>"+problem + " <hr>This Message appears once per animal file. <br>See ouput to get the total list of missing frames</html>", MessageDialog.ERROR_MESSAGE );
- warningHasBeenDisplayed = true;
- }
- }
- else
- {
- mouseARecordReSorted.put( t-tMin, mouseARecord.get( t ) );
- mouseARecord.remove( t );
-
- //mouseBRecord.put( t-tMin, mouseBRecord.get( t ) );
- mouseBRecordReSorted.put( t-tMin, mouseBRecord.get( t ) );
- mouseBRecord.remove( t );
- }
-
-
- // System.out.println( "t-TMin:" +(t-tMin) + " t:"+ t);
-
- //mouseARecord.put( t-tMin, mouseARecord.get( t ) );
-
-
-
-
- // mouseARecordReSorted.put( t-tMin, mouseARecord.get( t ) );
- // mouseARecord.remove( t );
- //
- // //mouseBRecord.put( t-tMin, mouseBRecord.get( t ) );
- // mouseBRecordReSorted.put( t-tMin, mouseBRecord.get( t ) );
- // mouseBRecord.remove( t );
- }
- }
-
- mouseARecord = mouseARecordReSorted;
- mouseBRecord = mouseBRecordReSorted;
- }
-
-// System.out.println( "--- check mouse record ");
-//
-// MouseInfoRecord test = mouseARecord.get( 4471 );
-// System.out.println( "contain object ? " + mouseARecord.containsKey( 4471 ) );
-// System.out.println( "record is " + test );
-
-// // test
-// for ( int t = tMin ; t< mouseARecord.size() ; t++ )
-// {
-// MouseInfoRecord info = mouseARecord.get( t );
-// if ( info == null )
-// {
-// System.out.println( "error at t:" + t );
-// System.out.println( "null" );
-// }
-//
-//// mouseARecord.put( t-tMin, mouseARecord.get( t ) );
-//// mouseARecord.remove( t );
-//
-//// mouseBRecord.put( t-tMin, mouseBRecord.get( t ) );
-//// mouseBRecord.remove( t );
-// }
-
-
-
- return tMin;
- }
-
- public void buildResultImage() {
-
- ArrayList<Periode> eventContactList = new ArrayList<Periode>();
-
- Icy.getMainInterface().getSwimmingPool().remove( swimmingObject );
- animal = new Animal( file.getName() );
- swimmingObject = new SwimmingObject( animal );
-
-// // look at max t val.
-//
-// int tMin = Integer.MAX_VALUE;
-// int tMax = 0;
-// {
-// Iterator<Integer> integerIterator = mouseARecord.keySet().iterator();
-// while ( integerIterator.hasNext() )
-// {
-// int val = integerIterator.next();
-// if ( val > tMax ) tMax = val;
-// if ( val < tMin ) tMin = val;
-// }
-// }
-// {
-// Iterator<Integer> integerIterator = mouseBRecord.keySet().iterator();
-// while ( integerIterator.hasNext() )
-// {
-// int val = integerIterator.next();
-// if ( val > tMax ) tMax = val;
-// if ( val < tMin ) tMin = val;
-// }
-// }
-
- //trimAnalysisRecord();
-
- int tMin = 0;
-
- START_MINUTE = Integer.parseInt( computeImageStartMinuteTextField.getText() );
- NB_MINUTE = Integer.parseInt( computeImageNbMinuteTextField.getText() );
-
-// FPS = Integer.parseInt( compute )
-
- firstFrame = (int) (tMin + START_MINUTE * 60* FPS);
-// lastFrame = tMax;
-
-// {
- lastFrame = (int) (firstFrame+NB_MINUTE*60*FPS);
-// }
-
- System.out.println("first frame : " + firstFrame );
- System.out.println("last frame : " + lastFrame );
-
- int tMax = lastFrame;
-
- int nbExtraEvent = 15 ; // getNbExtraEvent( file );
-
- imageChrono = new BufferedImage( lastFrame-firstFrame , 480 + nbExtraEvent*stepY , BufferedImage.TYPE_INT_BGR );
-
- imageComponent.setImage( imageChrono );
-
- panel.updateUI();
-
- int currentY = 0;
-
-
- Graphics2D g2 = (Graphics2D) imageChrono.getGraphics();
-
- // empty image
-
- g2.fillRect( 0 , 0 , imageChrono.getWidth() , imageChrono.getHeight() );
-
- // Clean up data
- {
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- //System.out.println(t + " / " + tMax );
-// System.out.println( t );
- if ( mouseARecord.containsKey( t ) )
- {
- MouseInfoRecord mouseA = mouseARecord.get( t );
- if (mouseA == null)
- {
- System.out.println("no mouse A record at t=" + t );
- }
- mouseA.distanceIsInferiorToThreshold1 = false;
- mouseA.distanceIsInferiorToThreshold2 = false;
- mouseA.isEscaping = false;
- mouseA.isEscapingFromOtherAndUnTouch = false;
- mouseA.isGettingToOtherAndTouch = false;
- mouseA.isGoingToTheOther = false;
- mouseA.mouseGetToOtherMouseAndEscapeInOut = false;
- mouseA.mouseGetToOtherMouseAndOtherEscapeInOut = false;
- mouseA.eventA = false;
- mouseA.eventB = false;
- mouseA.eventC = false;
- mouseA.eventD = false;
- mouseA.isBehindTheOther = false;
- mouseA.isBesideTheOther = false;
- mouseA.thisHeadWithOtherGenitalContact = false;
- }
- if ( mouseBRecord.containsKey( t ) )
- {
- MouseInfoRecord mouseB = mouseBRecord.get( t );
- mouseB.distanceIsInferiorToThreshold1 = false;
- mouseB.distanceIsInferiorToThreshold2 = false;
- mouseB.isEscaping = false;
- mouseB.isEscapingFromOtherAndUnTouch = false;
- mouseB.isGettingToOtherAndTouch = false;
- mouseB.isGoingToTheOther = false;
- mouseB.mouseGetToOtherMouseAndEscapeInOut = false;
- mouseB.mouseGetToOtherMouseAndOtherEscapeInOut = false;
- mouseB.eventA = false;
- mouseB.eventB = false;
- mouseB.eventC = false;
- mouseB.eventD = false;
- mouseB.isBehindTheOther = false;
- mouseB.isBesideTheOther = false;
- mouseB.thisHeadWithOtherGenitalContact = false;
- }
- }
- }
-
- // DISPLAY TIME
- {
- g2.setColor( Color.black );
-
- {
- for ( int t = 0 ; t < tMax ; t++ )
- {
-
- if ( t % (FPS*2) < 1 )
- {
- g2.drawString( ""+ (int)(t/(FPS*60)) +":"+ decimalFormat.format( (int)(t/FPS % 60 ) ) , t-firstFrame , currentY+12 );
- g2.drawLine( t-firstFrame , currentY , t-firstFrame, currentY + stepY );
- }
-
- }
- }
- currentY+=stepY;
- imageComponent.stringList.add("Time");
- }
-
- {
-
-
- // Label 2
- // Distance de souris A a B est inferieure a SEUIL_DISTANCE_1
- boolean event = false;
- int nbEvent = 0;
- int total = 0;
-
- EventTimeLine distanceLessThanThreshold1TimeLine = new EventTimeLine( "Distance < thr 1" ,
- EventType.DISTANCE_INFERIOR_THRESHOLD_1 , TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add( distanceLessThanThreshold1TimeLine );
-
- g2.setColor( Color.red );
- for ( int t = 0 ; t < tMax ; t++ )
- {
-// System.out.println("working on t=" + t );
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
- //System.out.println("contain keys");
-
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- float minDistance = Float.MAX_VALUE;
- minDistance = getMin( minDistance , (float)mouseA.bodyPosition.distance( mouseB.bodyPosition ) );
- minDistance = getMin( minDistance , (float)mouseA.bodyPosition.distance( mouseB.headPosition ) );
- minDistance = getMin( minDistance , (float)mouseA.bodyPosition.distance( mouseB.tailPosition ) );
- minDistance = getMin( minDistance , (float)mouseA.headPosition.distance( mouseB.bodyPosition ) );
- minDistance = getMin( minDistance , (float)mouseA.headPosition.distance( mouseB.headPosition ) );
- minDistance = getMin( minDistance , (float)mouseA.headPosition.distance( mouseB.tailPosition ) );
- minDistance = getMin( minDistance , (float)mouseA.tailPosition.distance( mouseB.bodyPosition ) );
- minDistance = getMin( minDistance , (float)mouseA.tailPosition.distance( mouseB.headPosition ) );
- minDistance = getMin( minDistance , (float)mouseA.tailPosition.distance( mouseB.tailPosition ) );
-
- //System.out.println( "min distance = " + minDistance );
-
- if ( minDistance < SEUIL_DISTANCE_1 )
- {
- distanceLessThanThreshold1TimeLine.addPunctualEvent( t-firstFrame );
- mouseA.distanceIsInferiorToThreshold1 = true;
- mouseB.distanceIsInferiorToThreshold1 = true;
- }else
- {
- mouseA.distanceIsInferiorToThreshold1 = false;
- mouseB.distanceIsInferiorToThreshold1 = false;
- }
-
- }
- }
-
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : distanceLessThanThreshold1TimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Distance less than THRESHOLD 1 nbEvent:"+nbEvent+" totalT:"+nbFrameToDisplayInSecond(total);
- g2.drawString( string , 0, currentY+12 );
-
- currentY+=stepY;
-
- imageComponent.stringList.add( string );
-
- }
-
-
- {
- // LABEL 3
- // Distance de souris A a B est inferieure a SEUIL_DISTANCE_2
- boolean event = false;
- int nbEvent = 0;
- int total = 0;
-
- EventTimeLine distanceLessThanThreshold2TimeLine = new EventTimeLine( "Distance < thr 2" , EventType.DISTANCE_INFERIOR_THRESHOLD_2 , TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add( distanceLessThanThreshold2TimeLine );
-
- g2.setColor( Color.orange );
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- float minDistance = Float.MAX_VALUE;
- minDistance = getMin( minDistance , (float)mouseA.bodyPosition.distance( mouseB.bodyPosition ) );
- minDistance = getMin( minDistance , (float)mouseA.bodyPosition.distance( mouseB.headPosition ) );
- minDistance = getMin( minDistance , (float)mouseA.bodyPosition.distance( mouseB.tailPosition ) );
- minDistance = getMin( minDistance , (float)mouseA.headPosition.distance( mouseB.bodyPosition ) );
- minDistance = getMin( minDistance , (float)mouseA.headPosition.distance( mouseB.headPosition ) );
- minDistance = getMin( minDistance , (float)mouseA.headPosition.distance( mouseB.tailPosition ) );
- minDistance = getMin( minDistance , (float)mouseA.tailPosition.distance( mouseB.bodyPosition ) );
- minDistance = getMin( minDistance , (float)mouseA.tailPosition.distance( mouseB.headPosition ) );
- minDistance = getMin( minDistance , (float)mouseA.tailPosition.distance( mouseB.tailPosition ) );
-
- if ( minDistance < SEUIL_DISTANCE_2 )
- {
- distanceLessThanThreshold2TimeLine.addPunctualEvent( t-firstFrame );
- mouseA.distanceIsInferiorToThreshold2 = true;
- mouseB.distanceIsInferiorToThreshold2 = true;
- }else
- {
- mouseA.distanceIsInferiorToThreshold2 = false;
- mouseB.distanceIsInferiorToThreshold2 = false;
- }
-
-
- }
- }
-
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : distanceLessThanThreshold2TimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Distance less than THRESHOLD 2 nbEvent:"+nbEvent+" totalT:"+nbFrameToDisplayInSecond(total);
- g2.drawString( string , 0, currentY+12 );
-
- currentY+=stepY;
-
- imageComponent.stringList.add( string );
- }
-
- {
- // LABEL 4
- // Head A - Head B SEUIL_DISTANCE_HEAD_HEAD
- boolean event = false;
- int nbEvent = 0;
- int total = 0;
-
- EventTimeLine OralOralTimeLine = new EventTimeLine( "Oral-Oral" , EventType.ORAL_ORAL , TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add( OralOralTimeLine );
-
- g2.setColor( Color.black );
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- float minDistance = Float.MAX_VALUE;
- minDistance = getMin( minDistance , (float)mouseA.headPosition.distance( mouseB.headPosition ) );
- if ( minDistance < SEUIL_DISTANCE_HEAD_HEAD )
- {
- OralOralTimeLine.addPunctualEvent(t - firstFrame );
-
- }
- else
- {
-
- }
- }
- }
-
- // display
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : OralOralTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Head - Head : nbevent: " + nbEvent + " TotalT="+nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY+12 );
-
- currentY+=stepY;
- imageComponent.stringList.add( string );
-
- }
- {
- // LABEL 5
- // Head A - Genital B SEUIL_DISTANCE_HEAD_GENITAL
- boolean event = false;
- int nbEvent = 0;
- int total = 0;
-
- EventTimeLine eventTimeLine = new EventTimeLine( "Oral A - Genital B" , EventType.ORAL_A_GENITAL_B , TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add( eventTimeLine );
-
- g2.setColor( Color.RED );
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- float minDistance = Float.MAX_VALUE;
- minDistance = getMin( minDistance , (float)mouseA.headPosition.distance( mouseB.tailPosition ) );
- if ( minDistance < SEUIL_DISTANCE_HEAD_GENITAL )
- {
- eventTimeLine.addPunctualEvent(t - firstFrame );
-
- mouseA.thisHeadWithOtherGenitalContact = true;
-
- }
- else
- {
-
- }
- }
- }
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- g2.drawLine( 0 , currentY -1, imageChrono.getWidth() , currentY -1 );
- String string = "Head A - Genital B nbEvent:"+nbEvent + " TotalT:"+nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY+12 );
-
- currentY+=stepY;
- imageComponent.stringList.add( string );
-
- }
- {
- // LABEL 6
- // Head B - Genital A SEUIL_DISTANCE_HEAD_GENITAL
- boolean event = false;
- int nbEvent = 0;
- int total = 0;
-
-
- EventTimeLine eventTimeLine = new EventTimeLine( "Oral B - Genital A" , EventType.ORAL_B_GENITAL_A , TimeLineCategory.USE_BOOLEAN_EVENT );
- animal.eventTimeLineList.add( eventTimeLine );
-
- g2.setColor( Color.GREEN );
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- float minDistance = Float.MAX_VALUE;
- minDistance = getMin( minDistance , (float)mouseA.tailPosition.distance( mouseB.headPosition ) );
- if ( minDistance < SEUIL_DISTANCE_HEAD_GENITAL )
- {
- eventTimeLine.addPunctualEvent(t - firstFrame );
-
- mouseB.thisHeadWithOtherGenitalContact = true;
-
- }
- else
- {
-
- }
- }
- }
-
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Head B - Genital A : nbEvent:"+nbEvent+ " totalT:"+nbFrameToDisplayInSecond(total) ;
- g2.drawString(string, 0, currentY+12 );
-
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
- {
- // Mouse A is behind Mouse B
- boolean event = false;
- int nbEvent = 0;
- int total = 0;
-
- EventTimeLine eventTimeLine = new EventTimeLine( "Mouse A behind B (any distance)" , EventType.A_BEHIND_B , TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add( eventTimeLine );
-
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- float mouseABodyToMouseBTail = (float)mouseA.bodyPosition.distance( mouseB.tailPosition ) ;
- float mouseABodyToMouseBHead = (float)mouseA.bodyPosition.distance( mouseB.headPosition ) ;
-
- if ( mouseABodyToMouseBTail < mouseABodyToMouseBHead )
- {
- eventTimeLine.addPunctualEvent(t - firstFrame );
-
- mouseA.isBehindTheOther = true;
-
- }
- else
- {
-
- }
- }
- }
-
- g2.setColor( Color.RED );
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- g2.drawLine( 0 , currentY -1, imageChrono.getWidth() , currentY -1 );
-
- String string = "Mouse A is behind B nbevent:"+nbEvent + " totalT:"+nbFrameToDisplayInSecond(total) ;
- g2.drawString( string , 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
-
- {
- // Mouse B is behind Mouse A
- boolean event = false;
- int nbEvent = 0;
- int total = 0;
-
- EventTimeLine eventTimeLine = new EventTimeLine( "Mouse B behind A (any distance)" , EventType.B_BEHIND_A , TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add( eventTimeLine );
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- float mouseBBodyToMouseATail = (float)mouseB.bodyPosition.distance( mouseA.tailPosition ) ;
- float mouseBBodyToMouseAHead = (float)mouseB.bodyPosition.distance( mouseA.headPosition ) ;
-
- if ( mouseBBodyToMouseATail < mouseBBodyToMouseAHead )
- {
- eventTimeLine.addPunctualEvent(t - firstFrame );
-
- mouseB.isBehindTheOther = true;
-
- }
- else
- {
- event = false;
- }
- }
- }
-
- g2.setColor( Color.GREEN );
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Mouse B is behind A nbevent:"+nbEvent + " totalT:"+nbFrameToDisplayInSecond(total);
- g2.drawString(string , 0, currentY+12 );
- imageComponent.stringList.add( string );
- currentY+=stepY;
- }
- {
- // Mice are next to the each other and body distance < DISTANCE_2 (same way)
- // Calcul par produit scalaire. si positif meme sens.
- boolean event = false;
- int nbEvent = 0;
- int total = 0;
-
-
- EventTimeLine eventTimeLine = new EventTimeLine( "Mouse next to each other (same way) < distance 2" , EventType.BESIDE_SAME_WAY , TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add( eventTimeLine );
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- float mouseABodyToMouseBBody = (float)mouseA.bodyPosition.distance( mouseB.bodyPosition ) ;
- float mouseAHeadToMouseBHead = (float)mouseA.headPosition.distance( mouseB.headPosition ) ;
-
-
-
- double vectSourisAX = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
- double vectSourisAY = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
- double vectSourisBX = mouseB.headPosition.getX() - mouseB.bodyPosition.getX();
- double vectSourisBY = mouseB.headPosition.getY() - mouseB.bodyPosition.getY();
-
- double produitScalaire = vectSourisAX * vectSourisBX + vectSourisAY * vectSourisBY ;
- double distance = Double.parseDouble( distance1TextField.getText() );
-
- if ( produitScalaire >= 0
- && mouseAHeadToMouseBHead < SEUIL_DISTANCE_1
- && mouseABodyToMouseBBody < SEUIL_DISTANCE_1
- )
- {
- eventTimeLine.addPunctualEvent(t - firstFrame );
-
- mouseA.isBesideTheOther = true;
- mouseB.isBesideTheOther = true;
-
- }else
- {
-
- }
-
- }
- }
-
- g2.setColor( Color.DARK_GRAY );
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Mice are next to the each other and body distance < DISTANCE_2 (same way) nbevent:"+nbEvent + " totalT:"+nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY+12 );
- imageComponent.stringList.add( string );
- currentY+=stepY;
- }
- {
- // Mice are next to the each other and body distance < DISTANCE_2 (opposite way)
- boolean event = false;
- int nbEvent = 0;
- int total = 0;
-
- EventTimeLine eventTimeLine = new EventTimeLine( "Mouse next to each other (opposite way) < distance 2" , EventType.BESIDE_OPPOSITE_WAY , TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add( eventTimeLine );
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- double vectSourisAX = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
- double vectSourisAY = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
- double vectSourisBX = mouseB.headPosition.getX() - mouseB.bodyPosition.getX();
- double vectSourisBY = mouseB.headPosition.getY() - mouseB.bodyPosition.getY();
-
- double produitScalaire = vectSourisAX * vectSourisBX + vectSourisAY * vectSourisBY ;
-
- float mouseABodyToMouseBHead = (float)mouseA.bodyPosition.distance( mouseB.headPosition ) ;
- float mouseAHeadToMouseBBody = (float)mouseA.headPosition.distance( mouseB.bodyPosition ) ;
-
- if ( produitScalaire < 0
- && mouseABodyToMouseBHead < SEUIL_DISTANCE_1
- && mouseAHeadToMouseBBody < SEUIL_DISTANCE_1
- )
- {
- eventTimeLine.addPunctualEvent(t - firstFrame );
-
- }else
- {
-
- }
-
-
- }
- }
-
- g2.setColor( Color.BLACK );
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Mice are next to the each other and body distance < DISTANCE_2 (opposite) nbevent:"+nbEvent + " totalT:"+nbFrameToDisplayInSecond(total);
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
-
- /** frameWindow est utilisé pour lisser le calcul de deplacement entre deux points de temps. t-framewindow et t+frameWindow */
- int frameWindow = 6; // 5
-
- {
- EventTimeLine eventTimeLine = new EventTimeLine( "Mouse A speed" , EventType.MOUSE_A_SPEED , TimeLineCategory.USE_DISCRETE_EVENT );
- animal.eventTimeLineList.add( eventTimeLine );
-
-
- // Mice A speed is from 0 to SPEED_THRESHOLD_1
- float nbVal = 0;
- float totalDistance = 0;
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t - frameWindow ) )
- if ( mouseBRecord.containsKey( t - frameWindow ) )
- if ( mouseARecord.containsKey( t + frameWindow ) )
- if ( mouseBRecord.containsKey( t + frameWindow ) )
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
- MouseInfoRecord mouseAprev = mouseARecord.get( t-frameWindow );
- MouseInfoRecord mouseBprev = mouseBRecord.get( t-frameWindow );
- MouseInfoRecord mouseAnext = mouseARecord.get( t+frameWindow );
- MouseInfoRecord mouseBnext = mouseBRecord.get( t+frameWindow );
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
-
- float distance = (float)mouseAprev.bodyPosition.distance( mouseAnext.bodyPosition );
- distance /= (float)(frameWindow *2 +1 ); // pour obtenir une vitesse par frame.
-
- nbVal++;
- totalDistance+=distance;
-
- mouseA.speed = distance;
-
- eventTimeLine.addValue( t -firstFrame , distance );
-
- if ( distance <= SPEED_THRESHOLD_1 )
- {
- g2.setColor( Color.BLACK );
- g2.drawLine( t-firstFrame , currentY , t-firstFrame, currentY + stepY );
- }
- if ( ( distance > SPEED_THRESHOLD_1 ) && ( distance < SPEED_THRESHOLD_2 ) )
- {
- g2.setColor( Color.DARK_GRAY );
- g2.drawLine( t-firstFrame , currentY , t-firstFrame, currentY + stepY );
- }
- if ( ( distance >= SPEED_THRESHOLD_2 ) )
- {
- g2.setColor( Color.GRAY );
- g2.drawLine( t-firstFrame , currentY , t-firstFrame, currentY + stepY );
- }
-
- }
- }
-
-
-
- g2.setColor( Color.red );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Mouse A speed slow=black fast=gray mean speed: " + totalDistance/nbVal;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
-
-
-
-
- {
- EventTimeLine eventTimeLine = new EventTimeLine( "Mouse B speed" , EventType.MOUSE_B_SPEED , TimeLineCategory.USE_DISCRETE_EVENT );
- animal.eventTimeLineList.add( eventTimeLine );
-
- // Mice B speed is from 0 to SPEED_THRESHOLD_1
- float nbVal = 0;
- float totalDistance = 0;
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t - frameWindow ) )
- if ( mouseBRecord.containsKey( t - frameWindow ) )
- if ( mouseARecord.containsKey( t + frameWindow ) )
- if ( mouseBRecord.containsKey( t + frameWindow ) )
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
-
- MouseInfoRecord mouseAprev = mouseARecord.get( t-frameWindow );
- MouseInfoRecord mouseBprev = mouseBRecord.get( t-frameWindow );
- MouseInfoRecord mouseAnext = mouseARecord.get( t+frameWindow );
- MouseInfoRecord mouseBnext = mouseBRecord.get( t+frameWindow );
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
-
- float distance = (float)mouseBprev.bodyPosition.distance( mouseBnext.bodyPosition );
- distance /= (float)(frameWindow *2 +1 ); // pour obtenir une vitesse par frame.
-
- mouseB.speed = distance;
- nbVal++;
- totalDistance+=distance;
-
- eventTimeLine.addValue( t -firstFrame , distance );
-
- if ( distance <= SPEED_THRESHOLD_1 )
- {
- g2.setColor( Color.BLACK );
- g2.drawLine( t-firstFrame , currentY , t-firstFrame, currentY + stepY );
- }
- if ( ( distance > SPEED_THRESHOLD_1 ) && ( distance < SPEED_THRESHOLD_2 ) )
- {
- g2.setColor( Color.DARK_GRAY );
- g2.drawLine( t-firstFrame , currentY , t-firstFrame, currentY + stepY );
- }
- if ( ( distance >= SPEED_THRESHOLD_2 ) )
- {
- g2.setColor( Color.GRAY );
- g2.drawLine( t-firstFrame , currentY , t-firstFrame, currentY + stepY );
- }
-
-
- }
- }
- g2.setColor( Color.red );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Mouse B speed slow=black fast=gray mean speed: " + totalDistance/nbVal;
- g2.drawString( string , 0, currentY+12 );
- imageComponent.stringList.add( string );
- currentY+=stepY;
- }
-
- {
- // Mouse A Stop
- boolean event=false;
- float nbEvent = 0;
- float total = 0;
-
-
- EventTimeLine eventTimeLine = new EventTimeLine( "A Stop" , EventType.A_STOP , TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add( eventTimeLine );
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t - frameWindow ) )
- if ( mouseBRecord.containsKey( t - frameWindow ) )
- if ( mouseARecord.containsKey( t + frameWindow ) )
- if ( mouseBRecord.containsKey( t + frameWindow ) )
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
- MouseInfoRecord mouseAprev = mouseARecord.get( t-frameWindow );
- MouseInfoRecord mouseBprev = mouseBRecord.get( t-frameWindow );
- MouseInfoRecord mouseAnext = mouseARecord.get( t+frameWindow );
- MouseInfoRecord mouseBnext = mouseBRecord.get( t+frameWindow );
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- double distanceTPrev = mouseAprev.bodyPosition.distance( mouseBprev.bodyPosition );
- double distanceTNext = mouseAnext.bodyPosition.distance( mouseBnext.bodyPosition );
-
- if ( mouseA.speed < SPEED_THRESHOLD_1 )
- {
-
- eventTimeLine.addPunctualEvent(t - firstFrame );
-
-
- }
- else
- {
- event = false;
- }
-
- }
- }
-
- g2.setColor( Color.red );
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "A Stop : nbEvent : "+ nbEvent+" total: "+nbFrameToDisplayInSecond(total) ;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
-
- {
- // Mouse B Stop
- boolean event=false;
- float nbEvent = 0;
- float total = 0;
-
-
- EventTimeLine eventTimeLine = new EventTimeLine( "B Stop" , EventType.B_STOP , TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add( eventTimeLine );
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t - frameWindow ) )
- if ( mouseBRecord.containsKey( t - frameWindow ) )
- if ( mouseARecord.containsKey( t + frameWindow ) )
- if ( mouseBRecord.containsKey( t + frameWindow ) )
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
- MouseInfoRecord mouseAprev = mouseARecord.get( t-frameWindow );
- MouseInfoRecord mouseBprev = mouseBRecord.get( t-frameWindow );
- MouseInfoRecord mouseAnext = mouseARecord.get( t+frameWindow );
- MouseInfoRecord mouseBnext = mouseBRecord.get( t+frameWindow );
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- double distanceTPrev = mouseAprev.bodyPosition.distance( mouseBprev.bodyPosition );
- double distanceTNext = mouseAnext.bodyPosition.distance( mouseBnext.bodyPosition );
-
- if ( mouseB.speed < SPEED_THRESHOLD_1 )
- {
-
- eventTimeLine.addPunctualEvent(t - firstFrame );
-
-
- }
- else
- {
- event = false;
- }
-
- }
- }
-
- g2.setColor( Color.green );
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "B Stop : nbEvent : "+ nbEvent+" total: "+nbFrameToDisplayInSecond(total) ;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
-
- {
- // Mouse A Speed > Mouse B Speed & Mouse A getting to B
- boolean event=false;
- float nbEvent = 0;
- float total = 0;
-
-
- EventTimeLine eventTimeLine = new EventTimeLine( "A Speed > B Speed & A GET TO B" , EventType.A_SPEED_HIGHER_THAN_B_SPEED_AND_A_GET_TO_B , TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add( eventTimeLine );
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t - frameWindow ) )
- if ( mouseBRecord.containsKey( t - frameWindow ) )
- if ( mouseARecord.containsKey( t + frameWindow ) )
- if ( mouseBRecord.containsKey( t + frameWindow ) )
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
- MouseInfoRecord mouseAprev = mouseARecord.get( t-frameWindow );
- MouseInfoRecord mouseBprev = mouseBRecord.get( t-frameWindow );
- MouseInfoRecord mouseAnext = mouseARecord.get( t+frameWindow );
- MouseInfoRecord mouseBnext = mouseBRecord.get( t+frameWindow );
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- double distanceTPrev = mouseAprev.bodyPosition.distance( mouseBprev.bodyPosition );
- double distanceTNext = mouseAnext.bodyPosition.distance( mouseBnext.bodyPosition );
-
- if ( mouseA.speed > mouseB.speed )
- {
- if ( distanceTPrev > distanceTNext )
- {
- eventTimeLine.addPunctualEvent(t - firstFrame );
-
-
-
- mouseA.isGoingToTheOther = true;
-
- }
- else
- {
-
- }
- }
- else
- {
- event = false;
- }
-
- }
- }
-
- g2.setColor( Color.red );
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Mouse A Speed > Mouse B Speed & Mouse A getting to B : nbEvent : "+ nbEvent+" total: "+nbFrameToDisplayInSecond(total) ;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
- {
- // Mouse B Speed > Mouse A Speed & Mouse B getting to A
- boolean event=false;
- float nbEvent = 0;
- float total = 0;
-
-
- EventTimeLine eventTimeLine = new EventTimeLine( "B Speed > A Speed & B GET TO A" , EventType.B_SPEED_HIGHER_THAN_A_SPEED_AND_B_GET_TO_A , TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add( eventTimeLine );
-
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t - frameWindow ) )
- if ( mouseBRecord.containsKey( t - frameWindow ) )
- if ( mouseARecord.containsKey( t + frameWindow ) )
- if ( mouseBRecord.containsKey( t + frameWindow ) )
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
- MouseInfoRecord mouseAprev = mouseARecord.get( t-frameWindow );
- MouseInfoRecord mouseBprev = mouseBRecord.get( t-frameWindow );
- MouseInfoRecord mouseAnext = mouseARecord.get( t+frameWindow );
- MouseInfoRecord mouseBnext = mouseBRecord.get( t+frameWindow );
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- double distanceTPrev = mouseAprev.bodyPosition.distance( mouseBprev.bodyPosition );
- double distanceTNext = mouseAnext.bodyPosition.distance( mouseBnext.bodyPosition );
-
- if ( mouseB.speed > mouseA.speed )
- {
- if ( distanceTPrev > distanceTNext )
- {
- eventTimeLine.addPunctualEvent(t - firstFrame );
-
-
- mouseB.isGoingToTheOther = true;
-
- }
- else
- {
-
- }
- }else
- {
- event = false;
- }
-
-
- }
- }
- g2.setColor( Color.green );
-
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Mouse B Speed > Mouse A Speed & Mouse B getting to A : nbEvent : "+ nbEvent+" total: "+nbFrameToDisplayInSecond(total) ;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
-
- {
- // Mouse A Speed > Mouse B Speed & Mouse A escaping from to B
-
- boolean event=false;
- float nbEvent = 0;
- float total = 0;
-
- EventTimeLine eventTimeLine = new EventTimeLine( "A Speed > B Speed & A escape B" , EventType.A_SPEED_HIGHER_THAN_B_SPEED_AND_A_ESCAPE_B , TimeLineCategory.USE_BOOLEAN_EVENT );
- animal.eventTimeLineList.add( eventTimeLine );
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t - frameWindow ) )
- if ( mouseBRecord.containsKey( t - frameWindow ) )
- if ( mouseARecord.containsKey( t + frameWindow ) )
- if ( mouseBRecord.containsKey( t + frameWindow ) )
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
- MouseInfoRecord mouseAprev = mouseARecord.get( t-frameWindow );
- MouseInfoRecord mouseBprev = mouseBRecord.get( t-frameWindow );
- MouseInfoRecord mouseAnext = mouseARecord.get( t+frameWindow );
- MouseInfoRecord mouseBnext = mouseBRecord.get( t+frameWindow );
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- double distanceTPrev = mouseAprev.bodyPosition.distance( mouseBprev.bodyPosition );
- double distanceTNext = mouseAnext.bodyPosition.distance( mouseBnext.bodyPosition );
-
- if ( mouseA.speed > mouseB.speed )
- {
- if ( distanceTPrev < distanceTNext )
- {
- eventTimeLine.addPunctualEvent(t - firstFrame );
-
- mouseA.isEscaping = true;
-
- }else
- {
-
- mouseA.isEscaping = false;
- }
- }
- else
- {
-
- }
-
-
- }
- }
- g2.setColor( Color.red );
-
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
-
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Mouse A Speed > Mouse B Speed & Mouse A escaping from B : nbEvent : "+ nbEvent+" total: "+nbFrameToDisplayInSecond(total) ;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
-
- {
- // Mouse B Speed > Mouse A Speed & Mouse B escaping from A
-
- boolean event=false;
- float nbEvent = 0;
- float total = 0;
-
- EventTimeLine eventTimeLine = new EventTimeLine( "B Speed > A Speed & B escape A" , EventType.B_SPEED_HIGHER_THAN_A_SPEED_AND_B_ESCAPE_A , TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add( eventTimeLine );
-
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t - frameWindow ) )
- if ( mouseBRecord.containsKey( t - frameWindow ) )
- if ( mouseARecord.containsKey( t + frameWindow ) )
- if ( mouseBRecord.containsKey( t + frameWindow ) )
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
- MouseInfoRecord mouseAprev = mouseARecord.get( t-frameWindow );
- MouseInfoRecord mouseBprev = mouseBRecord.get( t-frameWindow );
- MouseInfoRecord mouseAnext = mouseARecord.get( t+frameWindow );
- MouseInfoRecord mouseBnext = mouseBRecord.get( t+frameWindow );
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- double distanceTPrev = mouseAprev.bodyPosition.distance( mouseBprev.bodyPosition );
- double distanceTNext = mouseAnext.bodyPosition.distance( mouseBnext.bodyPosition );
-
- if ( mouseB.speed > mouseA.speed )
- {
- if ( distanceTPrev < distanceTNext )
- {
-
- eventTimeLine.addPunctualEvent(t - firstFrame );
-
- mouseB.isEscaping = true ;
-
- }else
- {
- mouseB.isEscaping = false ;
-
- }
- }
- else
- {
-
- }
-
-
- }
- }
- g2.setColor( Color.green );
-
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Mouse B Speed > Mouse A Speed & Mouse B escaping from A : nbEvent : "+ nbEvent+" total: "+nbFrameToDisplayInSecond(total) ;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
-
- {
- // Mouse A going to B and finishing with contact starting from no contact.
-
- EventTimeLine eventTimeLine = new EventTimeLine( "Mouse A going to B and finishing with contact starting from no contact" , EventType.A_GOTO_B_FINISH_CONTACT_START_NO_CONTACT , TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add( eventTimeLine );
-
- float nbEvent = 0;
- float total = 0;
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
-
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- if ( mouseA.distanceIsInferiorToThreshold1 ) // contact
- {
- ArrayList<Integer> timeToFill = new ArrayList<Integer>();
- // loop back if there is an approach
- for ( int t2 = t ; t2 > 0 ; t2-- )
- {
- if ( mouseARecord.containsKey( t2 ) )
- {
- MouseInfoRecord mouseAt2 = mouseARecord.get( t2 );
- if ( mouseAt2.isGoingToTheOther )
- {
- timeToFill.add( t2 );
-
- if ( !mouseAt2.distanceIsInferiorToThreshold1 )
- {
- for ( int t3 = t2 ; t3 > 0 ; t3 -- )
- {
- if ( mouseARecord.containsKey( t3 ) )
- {
- MouseInfoRecord mouseAt3 = mouseARecord.get( t3 );
- if ( mouseAt3.isGoingToTheOther )
- {
- timeToFill.add( t3 );
- }else
- {
- break;
- }
- }
- }
- break;
- }
-
- }
- else // sortie de la boucle de remontee
- {
- // check if we started from a position far from the other.
- if ( mouseAt2.distanceIsInferiorToThreshold1 ) timeToFill.clear();
- break;
- }
- }
- }
-
- // si le time to fill est >0 c'est qu'il a trouve qq chose.
- // il faut maintenant avancer dans le temps jusqu a la fin de l evenement
- if ( timeToFill.size() > 0 )
- {
- for ( int t2 = t+1 ; t2 < tMax ; t2++ )
- {
- MouseInfoRecord mouseAt2 = mouseARecord.get( t2 );
- if ( mouseAt2.isGoingToTheOther )
- {
- timeToFill.add( t2 );
- t = t2;
- }
- else
- {
- break;
- }
- }
- }
-
- for ( int i = 0 ; i < timeToFill.size() ; i++ )
- {
- int index = timeToFill.get( i );
- MouseInfoRecord mouseAt2 = mouseARecord.get( index );
- mouseAt2.isGettingToOtherAndTouch = true;
-
- eventTimeLine.addPunctualEvent(index - firstFrame );
-
- }
-
- }
-
- }
- }
-
- g2.setColor( Color.red );
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- //System.out.println( "event. StartFrame: " + eventCriteria.startFrame + " EndFrame: " + eventCriteria.endFrame );
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Mouse A going to B and finishing with contact starting from no contact.: nbEvent : "+ nbEvent+" total: "+nbFrameToDisplayInSecond(total) ;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
-
- {
- // Mouse B going to A and finishing with contact and starting from > Threshold Distance.
-
-
- EventTimeLine eventTimeLine = new EventTimeLine( "Mouse B going to A and finishing with contact and starting from no contact" ,
- EventType.B_GOTO_A_FINISH_CONTACT_START_NO_CONTACT , TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add( eventTimeLine );
-
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
-
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
-
-
- if ( mouseA.distanceIsInferiorToThreshold1 ) // contact
- {
-
-
- ArrayList<Integer> timeToFill = new ArrayList<Integer>();
- // loop back if there is an approach
- for ( int t2 = t ; t2 > 0 ; t2-- )
- {
-
- if ( mouseBRecord.containsKey( t2 ) )
- {
- MouseInfoRecord mouseBt2 = mouseBRecord.get( t2 );
- if ( mouseBt2.isGoingToTheOther )
- {
- timeToFill.add( t2 );
-
-
- if ( !mouseBt2.distanceIsInferiorToThreshold1 )
- {
- for ( int t3 = t2 ; t3 > 0 ; t3 -- )
- {
- if ( mouseBRecord.containsKey( t3 ) )
- {
- MouseInfoRecord mouseBt3 = mouseBRecord.get( t3 );
- if ( mouseBt3.isGoingToTheOther )
- {
- timeToFill.add( t3 );
- }else
- {
- break;
- }
- }
- }
- break;
- }
-
- }
- else // sortie de la boucle de remontee
- {
- // check if we started from a position far from the other.
- if ( mouseBt2.distanceIsInferiorToThreshold1 ) timeToFill.clear();
- break;
- }
- }
- }
-
- // si le time to fill est >0 c'est qu'il a trouve qq chose.
- // il faut maintenant avancer dans le temps jusqu a la fin de l evenement
- if ( timeToFill.size() > 0 )
- {
- for ( int t2 = t+1 ; t2 < tMax ; t2++ )
- {
- MouseInfoRecord mouseBt2 = mouseBRecord.get( t2 );
- if ( mouseBt2.isGoingToTheOther )
- {
- timeToFill.add( t2 );
- t = t2;
- }
- else
- {
- break;
- }
- }
- }
-
- g2.setColor( Color.green );
- if ( timeToFill.size() > 0 ) nbEvent++;
- total +=timeToFill.size();
- for ( int i = 0 ; i < timeToFill.size() ; i++ )
- {
- int index = timeToFill.get( i );
- MouseInfoRecord mouseBt2 = mouseBRecord.get( index );
- mouseBt2.isGettingToOtherAndTouch = true;
- eventTimeLine.addPunctualEvent( index -firstFrame );
-
- }
-
-
- }
-
- }
- }
-
- g2.setColor( Color.green );
- // draw result
-
- nbEvent = 0;
- total = 0;
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Mouse B going to A and finishing with contact starting from no contact.: nbEvent : "+ nbEvent+" total: "+nbFrameToDisplayInSecond(total) ;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
-
- {
- // Mouse A escaping after contact. finish with out threshold.
-
- EventTimeLine eventTimeLine = new EventTimeLine( "Mouse A escaping after contact. finish with out threshold." ,
- EventType.A_ESCAPE_AFTER_CONTACT_FINISH_WITH_NO_CONTACT , TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add( eventTimeLine );
-
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
-
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- if ( mouseA.distanceIsInferiorToThreshold1 ) // contact
- {
- ArrayList<Integer> timeToFill = new ArrayList<Integer>();
- // loop back if there is an approach
- for ( int t2 = t ; t2 < Integer.MAX_VALUE ; t2++ )
- {
- if ( mouseARecord.containsKey( t2 ) )
- {
- MouseInfoRecord mouseAt2 = mouseARecord.get( t2 );
- if ( mouseAt2.isEscaping )
- {
- timeToFill.add( t2 );
-
-
- if ( !mouseAt2.distanceIsInferiorToThreshold1 )
- {
-
- for ( int t3 = t2 ; t3 < tMax ; t3 ++ )
- {
- if ( mouseARecord.containsKey( t3 ) )
- {
- MouseInfoRecord mouseAt3 = mouseARecord.get( t3 );
- if ( mouseAt3.isEscaping )
- {
- timeToFill.add( t3 );
- }else
- {
- break;
- }
- }
- }
- break;
- }
-
- }
- else // sortie de la boucle de remontee
- {
- // check if we started from a position far from the other.
- if ( mouseAt2.distanceIsInferiorToThreshold1 ) timeToFill.clear();
- break;
- }
- }
- else
- {
- break;
- }
- }
- g2.setColor( Color.red );
- if ( timeToFill.size() > 0 ) nbEvent++;
- total +=timeToFill.size();
-
- for ( int i = 0 ; i < timeToFill.size() ; i++ )
- {
- int index = timeToFill.get( i );
- MouseInfoRecord mouseAt2 = mouseARecord.get( index );
- mouseAt2.isEscapingFromOtherAndUnTouch = true;
- eventTimeLine.addPunctualEvent(index - firstFrame );
-
- }
- t+=timeToFill.size();
- }
-
- }
- }
- g2.setColor( Color.red );
-
- // draw result
- nbEvent= 0;
- total = 0;
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Mouse A escaping after contact and finish out of distance threshold. : nbEvent : "+ nbEvent+" total: "+nbFrameToDisplayInSecond(total) ;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
-
-
- {
- // Mouse B escaping after contact. finish with out threshold.
-
- EventTimeLine eventTimeLine = new EventTimeLine( "Mouse B escaping after contact. finish with out threshold." ,
- EventType.B_ESCAPE_AFTER_CONTACT_FINISH_WITH_NO_CONTACT , TimeLineCategory.USE_BOOLEAN_EVENT );
- animal.eventTimeLineList.add( eventTimeLine );
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
-
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- if ( mouseA.distanceIsInferiorToThreshold1 ) // contact
- {
- ArrayList<Integer> timeToFill = new ArrayList<Integer>();
- // loop back if there is an approach
- for ( int t2 = t ; t2 < Integer.MAX_VALUE ; t2++ )
- {
- if ( mouseBRecord.containsKey( t2 ) )
- {
- MouseInfoRecord mouseBt2 = mouseBRecord.get( t2 );
- if ( mouseBt2.isEscaping )
- {
- timeToFill.add( t2 );
-
-
- if ( !mouseBt2.distanceIsInferiorToThreshold1 )
- {
-
- for ( int t3 = t2 ; t3 < tMax ; t3 ++ )
- {
- if ( mouseBRecord.containsKey( t3 ) )
- {
- MouseInfoRecord mouseBt3 = mouseBRecord.get( t3 );
- if ( mouseBt3.isEscaping )
- {
- timeToFill.add( t3 );
- }else
- {
- break;
- }
- }
- }
- break;
- }
-
- }
- else
- {
-
- if ( mouseBt2.distanceIsInferiorToThreshold1 ) timeToFill.clear();
- break;
- }
- }
- else
- {
- break;
- }
- }
- g2.setColor( Color.green );
- if ( timeToFill.size() > 0 ) nbEvent++;
- total +=timeToFill.size();
-
- for ( int i = 0 ; i < timeToFill.size() ; i++ )
- {
- int index = timeToFill.get( i );
- MouseInfoRecord mouseBt2 = mouseBRecord.get( index );
- mouseBt2.isEscapingFromOtherAndUnTouch = true;
-
- eventTimeLine.addPunctualEvent( index - firstFrame );
-
- }
- t+=timeToFill.size();
- }
-
- }
- }
- g2.setColor( Color.green );
-
-
- nbEvent =0;
- total = 0;
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Mouse B escaping after contact and finish out of distance threshold : nbEvent : "+ nbEvent+" total: "+nbFrameToDisplayInSecond(total) ;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
-
-
- {
- // Mouse A get to mouse B and B escape with threshold distance in and out.
-
-
- EventTimeLine eventTimeLine = new EventTimeLine( "A get to B and B escape threshold in and out" , EventType.A_GOTO_B_AND_B_ESCAPE_THRESHOLD_IN_OUT , TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add( eventTimeLine );
-
-
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
-
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- if ( mouseA.isGettingToOtherAndTouch ) // contact
- {
- ArrayList<Integer> timeToFill = new ArrayList<Integer>();
-
-
- boolean step1ok = false;
- boolean step2ok = false;
- boolean step3ok = false;
-
- int seeker = t;
-
- // STEP 1
-
- for ( int t2 = seeker ; t2 < tMax ; t2++ )
- {
- seeker = t2;
- if ( mouseARecord.containsKey( t2 ) )
- {
- MouseInfoRecord mouseAt2 = mouseARecord.get( t2 );
- if ( mouseAt2.isGettingToOtherAndTouch )
- {
- timeToFill.add( t2 );
- }
- else // sortie de la boucle de remontee
- {
- step1ok = true;
- break;
- }
- }
- }
-
- // STEP 2
-
- for ( int t2 = seeker ; t2 < tMax ; t2++ )
- {
- seeker = t2;
- if ( mouseARecord.containsKey( t2 ) )
- {
- MouseInfoRecord mouseAt2 = mouseARecord.get( t2 );
- if ( mouseAt2.distanceIsInferiorToThreshold1 )
- {
- timeToFill.add( t2 );
- }
- else // sortie de la boucle de remontee
- {
- step2ok = true;
- break;
- }
- }
- }
-
-
- // STEP 3
-
- for ( int t2 = seeker ; t2 < tMax ; t2++ )
- {
- seeker = t2;
- if ( mouseBRecord.containsKey( t2 ) )
- {
- MouseInfoRecord mouseBt2 = mouseBRecord.get( t2 );
- if ( mouseBt2.isEscapingFromOtherAndUnTouch )
- {
- timeToFill.add( t2 );
- step3ok = true;
- }
- else // sortie de la boucle de remontee
- {
- break;
- }
- }
- }
-
- if ( !( step1ok && step2ok && step3ok ) )
- {
- timeToFill.clear();
- }
-
-
- g2.setColor( Color.red );
- if ( timeToFill.size() > 0 ) nbEvent++;
- total +=timeToFill.size();
-
- for ( int i = 0 ; i < timeToFill.size() ; i++ )
- {
- int index = timeToFill.get( i );
- MouseInfoRecord mouseBt2 = mouseBRecord.get( index );
- mouseBt2.isEscapingFromOtherAndUnTouch = true;
-
- eventTimeLine.addPunctualEvent(index - firstFrame );
-
- mouseARecord.get( index ).mouseGetToOtherMouseAndOtherEscapeInOut = true;
- }
- t+=timeToFill.size();
- }
-
- }
- }
-
- g2.setColor( Color.red );
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- g2.drawLine( 0 , currentY +1 , imageChrono.getWidth() , currentY +1 );
-
- String string = "Mouse A get to mouse B and B escape with threshold distance in and out : nbEvent : "+ nbEvent+" total: "+nbFrameToDisplayInSecond(total) ;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
-
- {
- // Mouse B get to mouse A and A escape with threshold distance in and out
-
- EventTimeLine eventTimeLine = new EventTimeLine( "B get to A and A escape threshold in and out" , EventType.B_GOTO_A_AND_A_ESCAPE_THRESHOLD_IN_OUT , TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add( eventTimeLine );
-
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
-
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- if ( mouseB.isGettingToOtherAndTouch ) // contact
- {
- ArrayList<Integer> timeToFill = new ArrayList<Integer>();
- // loop forward to the contact.
-
- boolean step1ok = false;
- boolean step2ok = false;
- boolean step3ok = false;
-
- int seeker = t;
-
- // STEP 1
-
- for ( int t2 = seeker ; t2 < tMax ; t2++ )
- {
- seeker = t2;
- if ( mouseBRecord.containsKey( t2 ) )
- {
- MouseInfoRecord mouseBt2 = mouseBRecord.get( t2 );
- if ( mouseBt2.isGettingToOtherAndTouch )
- {
- timeToFill.add( t2 );
- }
- else // sortie de la boucle de remontee
- {
- step1ok = true;
- break;
- }
- }
- }
-
- // STEP 2
-
- for ( int t2 = seeker ; t2 < tMax ; t2++ )
- {
- seeker = t2;
- if ( mouseBRecord.containsKey( t2 ) )
- {
- MouseInfoRecord mouseBt2 = mouseBRecord.get( t2 );
- if ( mouseBt2.distanceIsInferiorToThreshold1 )
- {
- timeToFill.add( t2 );
- }
- else // sortie de la boucle de remontee
- {
- step2ok = true;
- break;
- }
- }
- }
-
-
- // STEP 3
-
- for ( int t2 = seeker ; t2 < tMax ; t2++ )
- {
- seeker = t2;
- if ( mouseARecord.containsKey( t2 ) )
- {
- MouseInfoRecord mouseAt2 = mouseARecord.get( t2 );
- if ( mouseAt2.isEscapingFromOtherAndUnTouch )
- {
- timeToFill.add( t2 );
- step3ok = true;
- }
- else // sortie de la boucle de remontee
- {
- break;
- }
- }
- }
-
- if ( !( step1ok && step2ok && step3ok ) )
- {
- timeToFill.clear();
- }
-
- g2.setColor( Color.green );
- if ( timeToFill.size() > 0 ) nbEvent++;
- total +=timeToFill.size();
-
- for ( int i = 0 ; i < timeToFill.size() ; i++ )
- {
- int index = timeToFill.get( i );
- MouseInfoRecord mouseAt2 = mouseARecord.get( index );
- mouseAt2.isEscapingFromOtherAndUnTouch = true;
-
- eventTimeLine.addPunctualEvent(index - firstFrame );
-
-
- mouseBRecord.get( index ).mouseGetToOtherMouseAndOtherEscapeInOut = true;
- }
- t+=timeToFill.size();
- }
-
- }
- }
- g2.setColor( Color.green );
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Mouse B get to mouse A and A escape with threshold distance in and out : nbEvent : "+ nbEvent+" total: "+nbFrameToDisplayInSecond(total) ;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
-
-
- {
- // Mouse A get to mouse B and A escape with threshold distance in and out.
-
-
- EventTimeLine eventTimeLine = new EventTimeLine( "A get to B and A escape threshold in and out" , EventType.A_GOTO_B_AND_A_ESCAPE_THRESHOLD_IN_OUT , TimeLineCategory.USE_BOOLEAN_EVENT );
- animal.eventTimeLineList.add( eventTimeLine );
-
-
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
-
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- if ( mouseA.isGettingToOtherAndTouch ) // contact
- {
- ArrayList<Integer> timeToFill = new ArrayList<Integer>();
- // loop forward to the contact.
-
- boolean step1ok = false;
- boolean step2ok = false;
- boolean step3ok = false;
-
- int seeker = t;
-
- // STEP 1
-
- for ( int t2 = seeker ; t2 < tMax ; t2++ )
- {
- seeker = t2;
- if ( mouseARecord.containsKey( t2 ) )
- {
- MouseInfoRecord mouseAt2 = mouseARecord.get( t2 );
- if ( mouseAt2.isGettingToOtherAndTouch )
- {
- timeToFill.add( t2 );
- step1ok = true; // maintenant ici
- }
- else // sortie de la boucle de remontee
- {
- //step1ok = true; avant la
- break;
- }
- }
- }
-
- // STEP 2
-
- for ( int t2 = seeker ; t2 < tMax ; t2++ )
- {
- seeker = t2;
- if ( mouseARecord.containsKey( t2 ) )
- {
- MouseInfoRecord mouseAt2 = mouseARecord.get( t2 );
- if ( mouseAt2.distanceIsInferiorToThreshold1 )
- {
- timeToFill.add( t2 );
- step2ok = true; // mainetnant ici
- }
- else // sortie de la boucle de remontee
- {
- // step2ok = true; avant la
- break;
- }
- }
- }
-
-
- // STEP 3
-
- for ( int t2 = seeker ; t2 < tMax ; t2++ )
- {
- seeker = t2;
- if ( mouseARecord.containsKey( t2 ) )
- {
- MouseInfoRecord mouseAt2 = mouseARecord.get( t2 );
- if ( mouseAt2.isEscapingFromOtherAndUnTouch )
- {
- timeToFill.add( t2 );
- step3ok = true;
- }
- else // sortie de la boucle de remontee
- {
- break;
- }
- }
- }
-
- if ( !( step1ok && step2ok && step3ok ) )
- {
- timeToFill.clear();
- }
-
-
- g2.setColor( Color.red );
- if ( timeToFill.size() > 0 ) nbEvent++;
- total +=timeToFill.size();
- for ( int i = 0 ; i < timeToFill.size() ; i++ )
- {
- int index = timeToFill.get( i );
- MouseInfoRecord mouseBt2 = mouseBRecord.get( index );
- mouseBt2.isEscapingFromOtherAndUnTouch = true;
-
- eventTimeLine.addPunctualEvent(index - firstFrame );
-
-
- mouseARecord.get( index ).mouseGetToOtherMouseAndEscapeInOut = true;
- }
- t+=timeToFill.size();
- }
-
- }
- }
- g2.setColor( Color.red );
-
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- g2.drawLine( 0 , currentY +1 , imageChrono.getWidth() , currentY +1 );
- String string = "Mouse A get to mouse B and A escape with threshold distance in and out : nbEvent : "+ nbEvent+" total: "+nbFrameToDisplayInSecond(total) ;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
-
-
-
- {
- // Mouse B get to mouse A and B escape with threshold distance in and out
-
- EventTimeLine eventTimeLine = new EventTimeLine( "B get to A and B escape threshold in and out" , EventType.B_GOTO_A_AND_B_ESCAPE_THRESHOLD_IN_OUT , TimeLineCategory.USE_BOOLEAN_EVENT );
- animal.eventTimeLineList.add( eventTimeLine );
-
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
-
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- if ( mouseB.isGettingToOtherAndTouch ) // contact
- {
- ArrayList<Integer> timeToFill = new ArrayList<Integer>();
- // loop forward to the contact.
-
- boolean step1ok = false;
- boolean step2ok = false;
- boolean step3ok = false;
-
- int seeker = t;
-
- // STEP 1
-
- for ( int t2 = seeker ; t2 < tMax ; t2++ )
- {
- seeker = t2;
- if ( mouseBRecord.containsKey( t2 ) )
- {
- MouseInfoRecord mouseBt2 = mouseBRecord.get( t2 );
- if ( mouseBt2.isGettingToOtherAndTouch )
- {
- timeToFill.add( t2 );
- step1ok = true; // maintenant ici
- }
- else // sortie de la boucle de remontee
- {
- // avant ici step1ok = true;
- break;
- }
- }
- }
-
- // STEP 2
-
- for ( int t2 = seeker ; t2 < tMax ; t2++ )
- {
- seeker = t2;
- if ( mouseBRecord.containsKey( t2 ) )
- {
- MouseInfoRecord mouseBt2 = mouseBRecord.get( t2 );
- if ( mouseBt2.distanceIsInferiorToThreshold1 )
- {
- timeToFill.add( t2 );
- step2ok = true; // mis ici
- }
- else // sortie de la boucle de remontee
- {
- // step2ok = true; avant ici
- break;
- }
- }
- }
-
-
- // STEP 3
-
- for ( int t2 = seeker ; t2 < tMax ; t2++ )
- {
- seeker = t2;
- if ( mouseBRecord.containsKey( t2 ) )
- {
- MouseInfoRecord mouseBt2 = mouseBRecord.get( t2 );
- if ( mouseBt2.isEscapingFromOtherAndUnTouch )
- {
- timeToFill.add( t2 );
- step3ok = true;
- }
- else // sortie de la boucle de remontee
- {
- break;
- }
- }
- }
-
- if ( !( step1ok && step2ok && step3ok ) )
- {
- timeToFill.clear();
- }
-
- g2.setColor( Color.green );
- if ( timeToFill.size() > 0 ) nbEvent++;
- total +=timeToFill.size();
-
- for ( int i = 0 ; i < timeToFill.size() ; i++ )
- {
- int index = timeToFill.get( i );
- MouseInfoRecord mouseAt2 = mouseARecord.get( index );
- mouseAt2.isEscapingFromOtherAndUnTouch = true;
- eventTimeLine.addPunctualEvent(index - firstFrame );
-
-
- mouseBRecord.get( index ).mouseGetToOtherMouseAndEscapeInOut = true;
- }
- t+=timeToFill.size();
-
- }
-
- }
- }
- g2.setColor( Color.green );
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Mouse B get to mouse A and B escape with threshold distance in and out : nbEvent : "+ nbEvent+" total: "+nbFrameToDisplayInSecond(total) ;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
-
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
-
- {
- // Event de poursuite.
- // A Poursuit B
- // =
- // A est en mouvement
- // B est en mouvement
- // A est derriere B ou A est sur le cote de B
- // Distance A-B inferieure a Threshold 2 ( le plus loin )
-
- EventTimeLine eventTimeLine = new EventTimeLine( "A follow B" , EventType.A_FOLLOW_B , TimeLineCategory.USE_BOOLEAN_EVENT );
- animal.eventTimeLineList.add( eventTimeLine );
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
-
- EventCriteria currentCriteria = null;
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
-
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- double distanceHeadABodyB = mouseA.headPosition.distanceSq( mouseB.bodyPosition );
- double distanceHeadAHeadB = mouseA.headPosition.distanceSq( mouseB.headPosition );
- double distanceBodyABodyB = mouseA.bodyPosition.distanceSq( mouseB.bodyPosition );
- double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq( mouseB.headPosition );
-
- if ( mouseB.distanceIsInferiorToThreshold2 // moins precis mais moins de bruit
-
- && mouseA.speed > SPEED_THRESHOLD_2
- && mouseB.speed > SPEED_THRESHOLD_2
- && ( mouseA.isBehindTheOther || mouseA.isBesideTheOther )
-
- ) // contact threshold 2
- {
- eventTimeLine.addPunctualEvent(t - firstFrame );
-
- }
-
- }
- }
- // filter results
-
- eventTimeLine.removeEventLessThanLength( 3 );
-
-
-
- g2.setColor( Color.RED );
- // display result.
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
-
-
-
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Mouse A poursuit B : nbEvent : "+ nbEvent+" total time: "+total / FPS + "s" ;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
-
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
-
- {
- // A est derriere B et B est derriere A
- // A est à l'arret et B est à l'arret
- // distance superieure a Threshold 2
- // back to back
- // angle formé inferieur a ANGLE dans le code ( 0.52d Rad )
-
- EventTimeLine eventTimeLine = new EventTimeLine( "back to back" , EventType.A_BEHIND_B_AND_B_BEHIND_A , TimeLineCategory.USE_BOOLEAN_EVENT );
- animal.eventTimeLineList.add( eventTimeLine );
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
-
- EventCriteria currentCriteria = null;
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
-
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- double distanceHeadABodyB = mouseA.headPosition.distanceSq( mouseB.bodyPosition );
- double distanceHeadAHeadB = mouseA.headPosition.distanceSq( mouseB.headPosition );
- double distanceBodyABodyB = mouseA.bodyPosition.distanceSq( mouseB.bodyPosition );
- double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq( mouseB.headPosition );
-
-
- double VAx = mouseA.headPosition.getX()-mouseA.bodyPosition.getX();
- double VAy = mouseA.headPosition.getY()-mouseA.bodyPosition.getY();
- double angleA = Math.atan2(VAy, VAx);
-
- double VBx = mouseB.headPosition.getX()-mouseB.bodyPosition.getX();
- double VBy = mouseB.headPosition.getY()-mouseB.bodyPosition.getY();
- double angleB = Math.atan2(VBy, VBx);
-
- // angle fait par le segment qui va de la souris A a la souris B.
-
- double VABx = mouseB.bodyPosition.getX() - mouseA.bodyPosition.getX();
- double VABy = mouseB.bodyPosition.getY() - mouseA.bodyPosition.getY();
- double angleAB = Math.atan2( VABy , VABx );
-
- angleB = angleB-Math.PI;
-
- // on recale les angles pour les rendres comparables
-
- // recherche de la plus petite difference entre les angles.
-
- double minAngle = Double.MAX_VALUE;
- for ( double a = -4 ; a < 5 ; a++ )
- {
- double testVal = Math.abs( angleB + 2*Math.PI*a - angleA );
- if ( testVal < minAngle ) minAngle = testVal;
- }
-
- double minAngleABwithA = Double.MAX_VALUE;
- for ( double a = -4 ; a < 5 ; a++ )
- {
- double testVal = Math.abs( angleA + Math.PI*a - angleAB );
- if ( testVal < minAngleABwithA ) minAngleABwithA = testVal;
- }
-
- double minAngleABwithB = Double.MAX_VALUE;
- for ( double a = -4 ; a < 5 ; a++ )
- {
- double testVal = Math.abs( angleB + Math.PI*a - angleAB );
- if ( testVal < minAngleABwithB ) minAngleABwithB = testVal;
- }
-
-
- if ( mouseA.speed < SPEED_THRESHOLD_1 && mouseB.speed < SPEED_THRESHOLD_1 )
- if ( !mouseA.distanceIsInferiorToThreshold2 ) // distance > Threshold 2
- if ( minAngle < 0.52d && mouseA.isBehindTheOther && mouseB.isBehindTheOther ) //&& !mouseA.distanceIsInferiorToThreshold1 ) // premier argument trouve angle opposé et l'autre force culcul
- if ( minAngleABwithA < 0.52d )
- if ( minAngleABwithB < 0.52d )
- {
- eventTimeLine.addPunctualEvent(t - firstFrame );
- }
-
-
-
-
-
- }
- }
- // filter results
-
- eventTimeLine.removeEventLessThanLength( 3 );
-
- g2.setColor( Color.gray );
- // display result.
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
-
-
-
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Back to back: nbEvent : "+ nbEvent+" total time: "+total / FPS +"s" ;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
- }
-
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
-
-
-
-
-
-
-
-
-
- // A regarde l'autre souris
- //
- {
- EventTimeLine eventTimeLine = new EventTimeLine( "A can see B" , EventType.A_CAN_SEE_B , TimeLineCategory.USE_BOOLEAN_EVENT );
- animal.eventTimeLineList.add( eventTimeLine );
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
-
- EventCriteria currentCriteria = null;
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
-
- //---------------------
-
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- double distanceHeadABodyB = mouseA.headPosition.distanceSq( mouseB.bodyPosition );
- double distanceHeadAHeadB = mouseA.headPosition.distanceSq( mouseB.headPosition );
- double distanceBodyABodyB = mouseA.bodyPosition.distanceSq( mouseB.bodyPosition );
- double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq( mouseB.headPosition );
-
-
- double VAx = mouseA.headPosition.getX()-mouseA.bodyPosition.getX();
- double VAy = mouseA.headPosition.getY()-mouseA.bodyPosition.getY();
- double angleA = Math.atan2(VAy, VAx);
-
- // teste A dans la vue.
-
- double VABx = mouseA.headPosition.getX()-mouseB.headPosition.getX();
- double VABy = mouseA.headPosition.getY()-mouseB.headPosition.getY();
- double angleBA = Math.atan2(VABy, VABx) + Math.PI;
-
- boolean eventIsOk = true;
-
- //if ( angleMin( angleBA , angleB ) < Math.PI / 2f )
- if ( angleMin( angleBA , angleA ) < demiVisionDeSouris )
- {
- //eventTimeLine.addPunctualEvent(t - firstFrame );
- }else
- {
- eventIsOk = false;
- }
-
- if ( mouseA.distanceIsInferiorToThreshold2 )
- {
- eventIsOk = false ;
- }
- //------------------------
- // flag l'event s'il est bon.
- if ( eventIsOk )
- {
- eventTimeLine.addPunctualEvent(t - firstFrame );
- }
-
-
-
- }
- }
- // filter results
-
- eventTimeLine.removeEventLessThanLength( 3 );
-
- g2.setColor( Color.RED );
- // display result.
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Mouse A can see B: nbEvent : "+ nbEvent+" total time: "+total /FPS +"s" ;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
-
- }
-
-
- // B regarde l'autre souris
- //
- {
- EventTimeLine eventTimeLine = new EventTimeLine( "B can see A" , EventType.B_CAN_SEE_A , TimeLineCategory.USE_BOOLEAN_EVENT );
- animal.eventTimeLineList.add( eventTimeLine );
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
-
- EventCriteria currentCriteria = null;
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
-
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- double distanceHeadABodyB = mouseA.headPosition.distanceSq( mouseB.bodyPosition );
- double distanceHeadAHeadB = mouseA.headPosition.distanceSq( mouseB.headPosition );
- double distanceBodyABodyB = mouseA.bodyPosition.distanceSq( mouseB.bodyPosition );
- double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq( mouseB.headPosition );
-
-
- double VBx = mouseB.headPosition.getX()-mouseB.bodyPosition.getX();
- double VBy = mouseB.headPosition.getY()-mouseB.bodyPosition.getY();
- double angleB = Math.atan2(VBy, VBx);
-
- // teste A dans la vue.
-
- double VBAx = mouseB.headPosition.getX()-mouseA.headPosition.getX();
- double VBAy = mouseB.headPosition.getY()-mouseA.headPosition.getY();
- double angleBA = Math.atan2(VBAy, VBAx) + Math.PI;
-
- boolean eventIsOk = true;
-
-
- if ( angleMin( angleBA , angleB ) < demiVisionDeSouris )
- {
-
- }else
- {
- eventIsOk = false;
- }
-
-
- // flag l'event s'il est bon.
- if ( eventIsOk )
- {
- eventTimeLine.addPunctualEvent(t - firstFrame );
- }
-
-
- }
- }
- // filter results
-
- eventTimeLine.removeEventLessThanLength( 3 );
-
- g2.setColor( Color.GREEN );
- // display result.
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = "Mouse B can see A: nbEvent : "+ nbEvent+" total time: "+total / FPS +"s" ;
- g2.drawString( string, 0, currentY+12 );
- imageComponent.stringList.add( string );
-
- currentY+=stepY;
-
- }
-
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
-
- currentY= loadExtraLabelXMLFile ( file , currentY , g2 );
- currentY= loadExtraLabelAviSoftTXTFile( file , currentY , g2 );
-
- Icy.getMainInterface().getSwimmingPool().add( swimmingObject );
-
- }
-
- private File getExtraXMLFile( File originalFile )
- {
- File extraFile = new File ( FileUtil.setExtension( file.getAbsolutePath() , ".extra.xml" ) );
- return extraFile;
- }
-
- private File getExtraAviSoftTXTFile( File originalFile )
- {
- File extraFile = new File ( FileUtil.setExtension( file.getAbsolutePath() , ".avisoft.txt" ) );
- return extraFile;
- }
-
- private File getExtraAviSoftXLSFile( File originalFile )
- {
- File extraFile = new File ( FileUtil.setExtension( file.getAbsolutePath() , ".avisoft.xls" ) );
- return extraFile;
- }
-
- private int getNbExtraEvent( File originalFile ) {
-
- int nbExtraEvent = 0;
-
- {
- File extraFile = getExtraXMLFile( originalFile );
- if ( extraFile.exists() )
- {
-
- Document xmlDocument = XMLUtil.loadDocument( extraFile );
- ArrayList<Element> labelElementList = XMLUtil.getElements( XMLUtil.getRootElement( xmlDocument ) , "LABEL" );
-
- System.out.println("Number of extra user labels (XML): " + labelElementList.size() );
-
- nbExtraEvent += labelElementList.size();
-
- }
- }
-
- {
- File extraFile = getExtraAviSoftTXTFile( originalFile );
- if ( extraFile.exists() )
- {
-// nlabel type duration interval starttime endtime pstart_time pstart pstart_ampl pend_time pend pend_ampl pmin_time pmin pmin_ampl pmax_time pmax pmax_ampl
-
- //Pattern pattern = Pattern.compile("(\t)(.*?)(\t)"); // finds string between tabs.
- int nbElement = 0;
-
- HashMap<String, Integer> eventFoundHashMap = new HashMap<String, Integer>();
-
- try {
-
- Scanner scanner = new Scanner( extraFile );
-
- while ( scanner.hasNextLine() )
- {
- int line = scanner.nextInt();
- String labelName = scanner.next( );
-
- //if ( labelName == null ) continue;
-
- int nbLabelWithThisName = 0;
- if ( eventFoundHashMap.containsKey( labelName ) )
- {
- nbLabelWithThisName = eventFoundHashMap.get( labelName );
- }
- eventFoundHashMap.put( labelName , nbLabelWithThisName+1 );
-
- scanner.nextLine();
- }
-
- for ( String labelName : eventFoundHashMap.keySet() )
- {
- System.out.println( "Label Name : " + labelName + " #" + eventFoundHashMap.get( labelName ) );
- }
-
- nbElement += eventFoundHashMap.keySet().size();
-
-
- } catch (FileNotFoundException e) {
- e.printStackTrace();
- }
-
- System.out.println("Number of extra user labels (AviSoft TXT): " + nbElement );
-
- nbExtraEvent += nbElement;
- }
- }
-
- {
- File extraFile = getExtraAviSoftXLSFile( originalFile );
- if ( extraFile.exists() )
- {
- // nlabel type duration interval starttime
-
- //Pattern pattern = Pattern.compile("(\t)(.*?)(\t)"); // finds string between tabs.
- int nbElement = 0;
-
- HashMap<String, Integer> eventFoundHashMap = new HashMap<String, Integer>();
-
- try {
-
- Workbook workbook = Workbook.getWorkbook( extraFile );
-
- Sheet sheet = workbook.getSheet( 0 );
- int nbRow = sheet.getRows();
- System.out.println( "Number of row in excel file: " + nbRow );
-
- int row = 1;
- while ( row < nbRow )
- {
- String labelName = sheet.getCell( 1, row ).getContents();
-
- int nbLabelWithThisName = 0;
- if ( eventFoundHashMap.containsKey( labelName ) )
- {
- nbLabelWithThisName = eventFoundHashMap.get( labelName );
- }
- eventFoundHashMap.put( labelName , nbLabelWithThisName+1 );
-
- row++;
- }
-
- for ( String labelName : eventFoundHashMap.keySet() )
- {
- System.out.println( "Label Name : " + labelName + " #" + eventFoundHashMap.get( labelName ) );
- }
-
- nbElement += eventFoundHashMap.keySet().size();
-
-
- } catch (FileNotFoundException e) {
- e.printStackTrace();
- } catch (BiffException e) {
- // TODO Auto-generated catch block
- e.printStackTrace();
- } catch (IOException e) {
- // TODO Auto-generated catch block
- e.printStackTrace();
- }
-
- System.out.println("Number of extra user labels (AviSoft XLS): " + nbElement );
-
- nbExtraEvent += nbElement;
- }
- }
-
-
- return nbExtraEvent;
- }
-
- private int loadExtraLabelAviSoftTXTFile( File originalFile , int currentY , Graphics2D g2 ) {
-
-
- File extraFile = getExtraAviSoftTXTFile( originalFile );
- if ( extraFile.exists() )
- {
- // nlabel type duration interval starttime endtime pstart_time pstart pstart_ampl pend_time pend pend_ampl pmin_time pmin pmin_ampl pmax_time pmax pmax_ampl
-
- //Pattern pattern = Pattern.compile("(\t)(.*?)(\t)"); // finds string between tabs.
- int nbElement = 0;
-
- HashMap<String, EventTimeLine> eventTimeLineHashMap = new HashMap<String, EventTimeLine>();
-/*
- EventTimeLine userEvent = new EventTimeLine( userLabelName ,
- EventType.USER_EVENT , TimeLineCategory.USE_BOOLEAN_EVENT );
- animal.eventTimeLineList.add( userEvent );
-*/
-
- try {
-
- loadDefaultUserEventSet( eventTimeLineHashMap , originalFile );
-
- Scanner scanner = new Scanner( extraFile );
-
- while ( scanner.hasNextLine() )
- {
- int lineNumber = scanner.nextInt(); // scan line number
- System.out.println("next line number : " + lineNumber );
-
- String labelName = scanner.next();
-
- /*
- int nbLabelWithThisName = 0;
- if ( eventFoundHashMap.containsKey( labelName ) )
- {
- nbLabelWithThisName = eventFoundHashMap.get( labelName );
- }
- eventFoundHashMap.put( labelName , nbLabelWithThisName+1 );
- */
- //System.out.print( "label name: " + labelName + ":");
- EventTimeLine userEvent = null;
-// for ( String keyString : eventTimeLineHashMap.keySet() )
-// {
-// if ( keyString.equals( labelName ) )
-// {
-// userEvent = eventTimeLineHashMap.get( labelName );
-// //System.out.print( ":found:");
-// break;
-// }
-// }
- if ( eventTimeLineHashMap.containsKey( labelName ) ) // retreive EventTimeLine
- {
- userEvent = eventTimeLineHashMap.get( labelName );
- }else
-
-// if (userEvent == null ) // means it was not found in keyset.
- { // creates a new eventTimeLine for this label.
- userEvent = new EventTimeLine( labelName ,
- EventType.USER_EVENT , TimeLineCategory.USE_BOOLEAN_EVENT );
- eventTimeLineHashMap.put( labelName, userEvent );
- animal.eventTimeLineList.add( userEvent );
- }
-
-
- float duration = scanner.nextFloat();
- float interval = scanner.nextFloat();
- float startTime = scanner.nextFloat();
-
- int durationInFrame = (int) (FPS * duration);
- int startTimeInFrame = (int) (FPS * startTime);
-
- //System.out.println( "line: " + line + " l:" + labelName + " s:" + startTime + " d:" + duration );
-
- for ( int t = startTimeInFrame ; t<= startTimeInFrame + durationInFrame ; t++ )
- {
- userEvent.addPunctualEvent( t-firstFrame );
- //System.out.print("a");
- }
- //System.out.println( "");
- if ( scanner.hasNextLine() ) // flush what remains in this line.
- {
- scanner.nextLine();
- }
- }
-
- scanner.close();
-
- //display label found
- ArrayList keys = new ArrayList(eventTimeLineHashMap.keySet() );
- Collections.sort( keys );
- //for ( EventTimeLine eventTimeLine : eventTimeLineHashMap.values() )
- //for ( Object key : keys )
- for ( int iTimeLine = 29 ; iTimeLine < animal.eventTimeLineList.size() ; iTimeLine++ )
- {
- //EventTimeLine eventTimeLine = eventTimeLineHashMap.get( key );
- EventTimeLine eventTimeLine = animal.eventTimeLineList.get( iTimeLine );
- //EventTimeLine eventTimeLine = eventTimeLineHashMap.get( eventTimeLineString );
- System.out.println("Processing eventTimeLine... " + eventTimeLine.criteriaName + " nb event : " + eventTimeLine.eventList.size() );
- nbElement++;
-
- int nbEvent =0;
- int total = 0;
- // draw result
- g2.setColor( Color.BLUE );
- for ( EventCriteria eventCriteria : eventTimeLine.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
- g2.setColor( Color.BLACK );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = eventTimeLine.criteriaName +" nb event: " + nbEvent + " totalT: " + nbFrameToDisplayInSecond(total);
- g2.drawString( string , 0, currentY+12 );
-
- currentY+=stepY;
-
- imageComponent.stringList.add( string );
-
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
-
- }
-
-
- } catch (FileNotFoundException e) {
- e.printStackTrace();
- }
-
- System.out.println("Number of extra user labels (AviSoft): " + nbElement );
-
- }
-
- return currentY;
-
-
- }
-
- /**
- * Loads a number of default user event set to force their presence in the list, and in a specific order.
- * Then those events can be compared in the label analyser as they appear at the same line index event.
- * (event 29 will be always the same)
- * Loads the file in the folder call defaultUserEvents.txt
- *
- * Example of what it can contain:
- *
- * s
- * f
- * u
- * d
- * mo
- * c
- * j1
- * j2
- * mi
- * n
- * o
- *
- * @param eventTimeLineHashMap
- * @param originalFile
- */
- private void loadDefaultUserEventSet( HashMap<String, EventTimeLine> eventTimeLineHashMap, File originalFile ) {
-
- File defaultUserEventSetFile =
- new File( FileUtil.getDirectory( originalFile.getAbsolutePath() ) + "//defaultUserEvents.txt" );
-
- System.out.println( "DefaultUserEventFile is: " + defaultUserEventSetFile.getAbsolutePath() );
-
- if ( FileUtil.exists( defaultUserEventSetFile.getAbsolutePath() ) )
- {
- System.out.println("Loading default User events...");
-
- try {
- Scanner scanner = new Scanner( defaultUserEventSetFile );
-
- while ( scanner.hasNextLine() )
- {
- String labelName = scanner.nextLine();
- System.out.println( labelName );
- EventTimeLine userEvent = new EventTimeLine( labelName ,
- EventType.USER_EVENT , TimeLineCategory.USE_BOOLEAN_EVENT );
- eventTimeLineHashMap.put( labelName, userEvent );
- animal.eventTimeLineList.add( userEvent );
- }
-
- scanner.close();
-
- } catch (FileNotFoundException e) {
- e.printStackTrace();
- }
-
- }
-
- /*
- String labelName = "";
- EventTimeLine userEvent = new EventTimeLine( labelName ,
- EventType.USER_EVENT , TimeLineCategory.USE_BOOLEAN_EVENT );
- eventTimeLineHashMap.put( labelName, userEvent );
- animal.eventTimeLineList.add( userEvent );
- */
-
-
- }
-
- private int loadExtraLabelXMLFile( File originalFile , int currentY , Graphics2D g2 ) {
-
-
- // load labels generated by user ( file extra.xml )
- File extraFile = getExtraXMLFile( originalFile );
-
- System.out.println("XML file is: " + file.getAbsolutePath() );
- System.out.println("Extra XML file is: " + extraFile.getAbsolutePath() );
-
-
- if ( ! extraFile.exists() ) return currentY;
-
- System.out.println( "The extra info file exists... Processing..." );
-
- Document xmlDocument = XMLUtil.loadDocument( extraFile );
-
- /** offset to shit in time the incoming labels, in order to sync them if needed. */
- int offset = 0;
-
- ArrayList<Element> labelElementListOffset = XMLUtil.getElements( XMLUtil.getRootElement( xmlDocument ) , "OFFSET" );
- for ( Element labelElement : labelElementListOffset )
- {
- offset = XMLUtil.getAttributeIntValue( labelElement , "offset", 0 );
- }
-
- /** min duration event */
- int minDurationEvent = 0;
-
- ArrayList<Element> labelElementListMinDuration = XMLUtil.getElements( XMLUtil.getRootElement( xmlDocument ) , "MINDURATION" );
- for ( Element labelElement : labelElementListMinDuration )
- {
- minDurationEvent = XMLUtil.getAttributeIntValue( labelElement , "minduration", 0 );
- }
-
-
- ArrayList<Element> labelElementList = XMLUtil.getElements( XMLUtil.getRootElement( xmlDocument ) , "LABEL" );
-
- for ( Element labelElement : labelElementList )
- {
-
- String userLabelName = XMLUtil.getAttributeValue( labelElement , "name", "no name");
- String userLabelColorString = XMLUtil.getAttributeValue( labelElement , "color", "green") ;
-
- System.out.println("Loading label " + userLabelName );
-
- Color userEventColor = null;
- try {
- Field field = Class.forName("java.awt.Color").getField( userLabelColorString );
- userEventColor = (Color)field.get(null);
- } catch (Exception e) {
- userEventColor = Color.green; // Not defined
- System.err.println("Unsupported color in label " + userLabelName + " (switching to green)");
- }
-
- // create node
-
- int nbEvent = 0;
- int total = 0;
-
- EventTimeLine userEvent = new EventTimeLine( userLabelName ,
- EventType.USER_EVENT , TimeLineCategory.USE_BOOLEAN_EVENT );
- animal.eventTimeLineList.add( userEvent );
-
- synchronizeAllAnimalEvent( userEvent );
-
-
- g2.setColor( userEventColor );
-
- // read events.
- ArrayList<Element> labelEventList = XMLUtil.getElements( labelElement , "EVENT" );
-
- for ( Element labelEvent : labelEventList )
- {
- int start = XMLUtil.getAttributeIntValue( labelEvent , "start", -1 );
- int end = XMLUtil.getAttributeIntValue( labelEvent , "end", -1 );
-
- if ( start == -1 )
- {
- System.err.println("Error in label " + userLabelName );
- System.err.println("Wrong start value (skipping event)" );
- continue;
- }
-
- if ( end == -1 )
- {
- System.err.println("Error in label " + userLabelName );
- System.err.println("Wrong end value (skipping event)" );
- continue;
- }
-
- if ( start > end )
- {
- System.err.println("Error in label " + userLabelName );
- System.err.println("start value > end value (skipping event)" );
- continue;
- }
-
- start += offset;
- end += offset;
-
- // check minduration event: if the event is smaller than mindurationevent, create an event of the correct length from start.
-
- if ( end - start < minDurationEvent )
- {
- end = start + minDurationEvent;
- }
-
- for ( int t = start ; t <= end ; t++ )
- {
- userEvent.addPunctualEvent( t-firstFrame );
- }
- }
-
- nbEvent =0;
- total = 0;
- // draw result
- for ( EventCriteria eventCriteria : userEvent.eventList )
- {
- nbEvent++;
- total+= eventCriteria.getLength();
- for ( int i = eventCriteria.startFrame ; i <=eventCriteria.endFrame ; i++ )
- {
- g2.drawLine( i , currentY , i , currentY + stepY );
- }
- }
-
- g2.setColor( Color.black );
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- String string = userLabelName + nbEvent + " totalT: " + nbFrameToDisplayInSecond(total);
- g2.drawString( string , 0, currentY+12 );
-
- currentY+=stepY;
-
- imageComponent.stringList.add( string );
-
- g2.drawLine( 0 , currentY , imageChrono.getWidth() , currentY );
- }
-
- System.out.println("Custom XML user label loaded.");
-
- return currentY;
- }
-
- /**
- * This function ensure that all the events are loaded the same way for all animals,
- * and even resort them, in order to have the exact same list (and same order) of event for all animals
- * @param userEvent
- */
- private void synchronizeAllAnimalEvent(EventTimeLine userEvent) {
-
- // TODO
-
- ArrayList<Animal> animalList = new ArrayList<Animal>();
- for ( VideoLabelPanel videoLabelPanel : videoLabelPanelArrayList )
- {
- animalList.add( videoLabelPanel.animal );
- }
-
- }
-
-
-
- float getMin( float a , float b )
- {
- if ( a < b ) return a;
- return b;
- }
-
- public void loadXML(File currentFile) {
-
- System.out.println("Loading document");
-
-
-
-
- // LOAD DOCUMENT
-
- mouseARecord.clear();
- mouseBRecord.clear();
-
-
- File XMLFile = currentFile;
- if ( !XMLFile.exists() ) return;
-
- Document XMLDocument = XMLUtil.loadDocument( XMLFile );
-
- XPath xpath = XPathFactory.newInstance().newXPath();
-
- // VIDEO FILE NAME LOAD
-
- {
- String expression = "//FILENAME";
- NodeList nodes;
- try {
- nodes = (NodeList)xpath.evaluate( expression , XMLDocument , XPathConstants.NODESET );
-
- //System.out.println( "node size : " + nodes.getLength() );
-
- Element fileNode = (Element) nodes.item( 0 );
- System.out.println( "Video file is :" + fileNode.getTextContent() );
- videoFile = new File( fileNode.getTextContent() );
-
-
- } catch (XPathExpressionException e) {
-
- e.printStackTrace();
- }
- }
-
- // MOUSE A LOAD
-
-// float startFrame = Float.parseFloat( loadFrameStartTextField.getText() );
-// float endFrame = Float.parseFloat( loadFrameEndTextField.getText() );
-
- float startFrame = 0;
- float endFrame = Float.MAX_VALUE;
-
- {
-
- String expression = "//MOUSEA/DET";
- NodeList nodes;
- try {
- nodes = (NodeList)xpath.evaluate( expression , XMLDocument , XPathConstants.NODESET );
-
- //System.out.println( "mouse A node size : " + nodes.getLength() );
-
- for ( int i = 0 ; i < nodes.getLength() ; i++ )
- {
- Element detNode = (Element) nodes.item( i );
-
-
- MouseInfoRecord mouseInfoRecord = new MouseInfoRecord();
- mouseInfoRecord.bodyPosition = new Point2D.Float(
- Float.parseFloat( detNode.getAttribute("bodyx") ),
- Float.parseFloat( detNode.getAttribute("bodyy") )
- );
- mouseInfoRecord.headPosition = new Point2D.Float(
- Float.parseFloat( detNode.getAttribute("headx") ),
- Float.parseFloat( detNode.getAttribute("heady") )
- );
- mouseInfoRecord.tailPosition = new Point2D.Float(
- Float.parseFloat( detNode.getAttribute("tailx") ),
- Float.parseFloat( detNode.getAttribute("taily") )
- );
-
- int currentT = Integer.parseInt( detNode.getAttribute("t") );
- if ( currentT >= startFrame && currentT <= endFrame )
- {
- //System.out.println("Mouse A adding record at t " + currentT );
- mouseARecord.put( currentT , mouseInfoRecord );
- }
-
- }
-
- } catch (XPathExpressionException e) {
-
- e.printStackTrace();
- }
- }
-
- // MOUSE B LOAD
-
- {
- String expression = "//MOUSEB/DET";
- NodeList nodes;
- try {
- nodes = (NodeList)xpath.evaluate( expression , XMLDocument , XPathConstants.NODESET );
-
- //System.out.println( "mouse B node size : " + nodes.getLength() );
-
- for ( int i = 0 ; i < nodes.getLength() ; i++ )
- {
- Element detNode = (Element) nodes.item( i );
-
-
-
- MouseInfoRecord mouseInfoRecord = new MouseInfoRecord();
- mouseInfoRecord.bodyPosition = new Point2D.Float(
- Float.parseFloat( detNode.getAttribute("bodyx") ),
- Float.parseFloat( detNode.getAttribute("bodyy") )
- );
- mouseInfoRecord.headPosition = new Point2D.Float(
- Float.parseFloat( detNode.getAttribute("headx") ),
- Float.parseFloat( detNode.getAttribute("heady") )
- );
- mouseInfoRecord.tailPosition = new Point2D.Float(
- Float.parseFloat( detNode.getAttribute("tailx") ),
- Float.parseFloat( detNode.getAttribute("taily") )
- );
-
- int currentT = Integer.parseInt( detNode.getAttribute("t") );
- if ( currentT >= startFrame && currentT <= endFrame )
- {
-
- //System.out.println("Mouse B adding record at t " + currentT );
-
- mouseBRecord.put( currentT , mouseInfoRecord );
- }
-
- }
-
- } catch (XPathExpressionException e) {
-
- e.printStackTrace();
- }
- }
-
- startOffset = trimAnalysisRecord();
-
- }
-
- /** Time in frame before the first analysis. Used to offset the video sequence. **/
- int startOffset=0;
-
- double only2digit ( double val )
- {
- val *=100;
- val = Math.floor( val );
- val /=100f;
- return val;
- }
-
- void computeVisionGraph( VisionGraph visionGraph )
- {
- //--------------------------------
- // A regarde l'autre souris ( non event / graph de vue )
- {
-
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
-
- int tabAngle[] = new int[361];
- int graphNumber = 0;
-
- int binSize=5;
-
- EventCriteria currentCriteria = null;
-
-
- int tMin = Integer.MAX_VALUE;
- int tMax = 0;
- {
- Iterator<Integer> integerIterator = mouseARecord.keySet().iterator();
- while ( integerIterator.hasNext() )
- {
- int val = integerIterator.next();
- if ( val > tMax ) tMax = val;
- if ( val < tMin ) tMin = val;
- }
- }
-
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseARecord.containsKey( t ) )
- if ( mouseBRecord.containsKey( t ) )
- {
- MouseInfoRecord mouseA = mouseARecord.get( t );
- MouseInfoRecord mouseB = mouseBRecord.get( t );
-
- double distanceHeadABodyB = mouseA.headPosition.distanceSq( mouseB.bodyPosition );
- double distanceHeadAHeadB = mouseA.headPosition.distanceSq( mouseB.headPosition );
- double distanceBodyABodyB = mouseA.bodyPosition.distanceSq( mouseB.bodyPosition );
- double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq( mouseB.headPosition );
-
-
- double VAx = mouseA.headPosition.getX()-mouseA.bodyPosition.getX();
- double VAy = mouseA.headPosition.getY()-mouseA.bodyPosition.getY();
- double angleA = Math.atan2(VAy, VAx);
-
- // teste A dans la vue.
-
- double VABx = -mouseA.headPosition.getX()+mouseB.headPosition.getX();
- double VABy = -mouseA.headPosition.getY()+mouseB.headPosition.getY();
- double angleBA = Math.atan2(VABy, VABx) ; //+ Math.PI;
-
- boolean eventIsOk = true;
-
-
- if ( angleMin( angleBA , angleA ) < demiVisionDeSouris )
- {
-
- }else
- {
- eventIsOk = false;
- }
-
- if ( visionGraph == VisionGraph.AT_FOLLOW_STATE )
- {
- // CRITERE EN POURSUITE
- if (
-
- ( mouseA.distanceIsInferiorToThreshold2 )
- ||
- ( !mouseA.isGettingToOtherAndTouch )
- )
- {
- eventIsOk = false;
- }
- }
-
- if ( visionGraph == VisionGraph.AT_STOP_STATE )
- {
- if (
- // CRITERE EN OBSERVATION A L ARRET
-
- ( mouseA.distanceIsInferiorToThreshold1 )
- ||
- ( mouseA.speed > SPEED_THRESHOLD_1 )
- )
-
- {
- eventIsOk = false ;
- }
- }
-
- if ( eventIsOk )
- {
-
- double angleSouris = angleA;
- double angleVision = angleBA;
-
- angleVision = angleVision - angleSouris;
-
- int angleVisionDeg = (int)( 180d * angleVision / Math.PI );
-
-
-
- while ( angleVisionDeg > 180 ) angleVisionDeg-=360;
- while ( angleVisionDeg < -180 ) angleVisionDeg+=360;
-
- int angleToFill = binSize * ((int)angleVisionDeg/binSize);
-
-
- tabAngle[ 180+angleToFill ]++;
-
-
- }
-
-
- }
- }
-
- // Graph de placement de I dans la vue de R.
- {
-
-
- XlsManager xls = null;
- File xlsFile = new File ( System.getProperty("user.home") + "\\"+ visionGraph.toString() + " " + animal.animalName+".xls" );
- try {
- xls = new XlsManager( xlsFile );
- } catch (IOException e) {
-
- e.printStackTrace();
- }
-
- xls.createNewPage("result");
-
- // Generation du graph de vue de la residente.
-
- JFreeChart chart;
- XYSeriesCollection xyDataset = new XYSeriesCollection();
- YIntervalSeriesCollection yintervalseriescollection = new YIntervalSeriesCollection();
- IcyFrame graphFrame = new IcyFrame("graph "+graphNumber+" "+animal.animalName , true , true, true , true );
- graphNumber++;
-
- chart = ChartFactory.createXYLineChart(
- "",
- "angle",
- "y",
- xyDataset,
- PlotOrientation.VERTICAL,
- true,
- false,
- false
- );
-
- XYSeries seriesXY = new XYSeries("Sight " + animal.animalName );
- xyDataset.addSeries( seriesXY );
-
- int cursorX = 0;
-
- for ( int i = 0 ; i < 360 ; i+=binSize )
- {
- seriesXY.add( i-180 , tabAngle[i] );
- xls.setNumber( cursorX , 0 , tabAngle[i] );
- cursorX++;
- }
-
- new AnnounceFrame("Exported in file " + xlsFile );
- xls.SaveAndClose();
-
- graphFrame.getContentPane().add( new ChartPanel( chart , 500 , 200 , 500 , 200 , 500 , 500 , false , false, true , true , true, true) );
- graphFrame.setVisible(true);
- graphFrame.pack();
- graphFrame.addToMainDesktopPane();
- graphFrame.center();
-
- }
-
- }
- }
-
- @Override
- public void actionPerformed(ActionEvent e) {
-
- if ( e.getSource() == computeVisionInFollowButton )
- {
- computeVisionGraph( VisionGraph.AT_FOLLOW_STATE );
- }
- if ( e.getSource() == computeVisionWhenStoppedButton )
- {
- computeVisionGraph( VisionGraph.AT_STOP_STATE );
- }
-
- if ( e.getSource() == exportSpeedButton )
- {
- // export speed computation
-
- File xlsFile = new File( file.getAbsolutePath()+".speed.xls" ) ;
-
- try {
- XlsManager xls = new XlsManager( xlsFile );
- //xls.createNewPage("Results");
-
- exportSpeed( xls, mouseARecord , "Mouse A");
- exportSpeed( xls, mouseBRecord , "Mouse B");
-
- xls.SaveAndClose();
-
- } catch (IOException e1) {
- e1.printStackTrace();
- }
-
-
- new AnnounceFrame( "Speed data have been exported to "+xlsFile.getAbsolutePath(), 5 );
-
-
- }
-
- if ( e.getSource() == computeLocationHeatMapButton )
- {
- computeLocationHeatMap();
- //computeEventLocationHeatMap();
- }
-
- if ( e.getSource() == computeUSVStat )
- {
- //computeVocStats();
- computeUSVStats();
- }
-
- if ( e.getSource() == exportEventsAsXML )
- {
- exportEventsAsXML();
- }
-
- if ( e.getSource() == saveImageButton )
- {
- // save a full strip of the image
- try {
- ImageIO.write(imageChrono, "png", new File( file.getAbsolutePath()+".1.png" ));
- } catch (IOException e1) {
- e1.printStackTrace();
- }
-
- // save criteria by criteria
-
- int numeroCriteria = 0;
- for ( int y = 0 ; y < imageChrono.getHeight() ; y+=stepY )
- {
-
- BufferedImage image2 = new BufferedImage( imageChrono.getWidth(), stepY , BufferedImage.TYPE_INT_BGR );
-
- Graphics2D targetG = (Graphics2D) image2.getGraphics();
-
- targetG.drawImage( imageChrono, null, 0 , -y );
-
- try {
- ImageIO.write( image2 , "png", new File( file.getAbsolutePath()+".criteria_"+numeroCriteria+".png" ));
- } catch (IOException e1) {
- e1.printStackTrace();
- }
- numeroCriteria++;
-
- }
-
- // save the strip with multiple lines.
-
- float desiredWidth = 1600*2;
-
- BufferedImage image2 = new BufferedImage( (int)desiredWidth, (int)(imageChrono.getHeight() * imageChrono.getWidth() / desiredWidth ), BufferedImage.TYPE_INT_BGR );
-
- Graphics2D sourceG = (Graphics2D) imageChrono.getGraphics();
- Graphics2D targetG = (Graphics2D) image2.getGraphics();
-
- int stepY = 0;
- for ( int offset = 0 ; offset < imageChrono.getWidth() ; offset+=desiredWidth )
- {
- targetG.drawImage( imageChrono, null, -offset, stepY * imageChrono.getHeight() );
- stepY++;
- }
-
- try {
- ImageIO.write(image2, "png", new File( file.getAbsolutePath()+".2.png"));
- } catch (IOException e1) {
- e1.printStackTrace();
- }
-
- }
-
- }
-
-
- private void exportEventsAsXML() {
-
- Document document = XMLUtil.createDocument( true );
-
- for ( EventTimeLine eventTimeLine : animal.eventTimeLineList )
- {
- Element elementTimeLine = document.createElement("EventTimeLine");
- document.getDocumentElement().appendChild( elementTimeLine );
- XMLUtil.setAttributeIntValue( elementTimeLine , "index", animal.eventTimeLineList.indexOf( eventTimeLine ) );
- XMLUtil.setAttributeValue( elementTimeLine , "name", eventTimeLine.criteriaName );
- XMLUtil.setAttributeValue( elementTimeLine , "type", eventTimeLine.eventType.toString() );
- XMLUtil.setAttributeValue( elementTimeLine , "timeLineCategory", eventTimeLine.timeLineCategory.toString() );
-
- for ( EventCriteria event : eventTimeLine.eventList )
- {
- Element elementEvent = document.createElement( "event" );
- elementTimeLine.appendChild( elementEvent );
- XMLUtil.setAttributeIntValue( elementEvent , "startFrame", event.startFrame );
- XMLUtil.setAttributeIntValue( elementEvent , "endFrame", event.endFrame );
- }
- }
-
- File xmlFile = new File( file.getAbsolutePath()+".allEventsExported.xml");
- XMLUtil.saveDocument( document , xmlFile );
- AnnounceFrame f = new AnnounceFrame( "File exported: " + xmlFile.getAbsolutePath() );
- }
-
- private void computeUSVStats() {
-
- // designed for USVs
- // given an event, let's say an USV event, this code provide the following ratio:
- // The number of USV event that are correlated with the events of a specific timeEvent.
- // 100% means all the USV event are overlapping with the candidate event.
- // 50% means half the USV event are ...
-
- WritableWorkbook workbook;
-
- try {
-
- workbook = XLSUtil.createWorkbook( new File( file.getAbsolutePath() + ".event.xls" ) );
- WritableSheet page = XLSUtil.createNewPage(workbook, "result");
-
- int currentColumn =1;
- for ( int indexOfUSVEvent = 29 ; indexOfUSVEvent < animal.eventTimeLineList.size() ; indexOfUSVEvent ++ )
- {
-
- EventTimeLine eventTimeLineWatched = animal.eventTimeLineList.get( indexOfUSVEvent );
-
- XLSUtil.setCellString( page, 0, 0, file.getAbsolutePath() );
-// XLSUtil.setCellString( page, 0, 1, "event watched: " + eventTimeLineWatched.criteriaName );
-// XLSUtil.setCellString( page, 0, 2, "nb event(s): " + eventTimeLineWatched.eventList.size() );
-
- int row = 5;
-
- XLSUtil.setCellString( page, 0, row, "event" );
- XLSUtil.setCellString( page, currentColumn, row-2, "Event: " + eventTimeLineWatched.criteriaName );
- XLSUtil.setCellString( page, currentColumn, row-1, "Nb event: " + eventTimeLineWatched.eventList.size() );
+ JButton computeVisionInFollowButton = new JButton("Export follow vision graph");
+ JButton computeVisionWhenStoppedButton = new JButton("Export stop vision graph");
+
+ JButton computeLocationHeatMapButton = new JButton("Create location heat map");
+
+ JButton computeUSVStat = new JButton("Create USV stat");
+
+ File file;
+ File extraXMLFile; // contains extra labels to include to this video.
+ File videoFile;
+ FrameAccess frameAccess;
+ Animal animal = null;
+ SwimmingObject swimmingObject = null;
+
+ public VideoLabelPanel(File fileXML)
+ {
+
+ computeVisionInFollowButton.setToolTipText("Location of I in the vision of R (R following)");
+ computeVisionWhenStoppedButton.setToolTipText("Location of I in the vision of R (R stopped)");
+
+ JPanel sidePanel2 = GuiUtil.generatePanel("Video");
+
+ // check if the user is trying to load an avi file, and switch extension to XML if this is the case.
+ if (FileUtil.getFileExtension(fileXML.getAbsolutePath(), false).toLowerCase().equals("avi"))
+ {
+ System.out.println("Avi loaded. Switching to XML.");
+ fileXML = new File(FileUtil.setExtension(fileXML.getAbsolutePath(), ".avi.xml"));
+ System.out.println("XML file name is : " + fileXML.getAbsolutePath());
+ }
+
+ this.file = fileXML;
+
+ panel = GuiUtil.generatePanel(fileXML.getAbsolutePath());
+
+ panel.setLayout(new BorderLayout());
+
+ sidePanel2.add(GuiUtil.besidesPanel(saveImageButton));
+ sidePanel2.add(GuiUtil.besidesPanel(exportEventsAsXML));
+ sidePanel2.add(GuiUtil.besidesPanel(exportSpeedButton));
+ sidePanel2.add(GuiUtil.besidesPanel(computeVisionInFollowButton));
+ sidePanel2.add(GuiUtil.besidesPanel(computeVisionWhenStoppedButton));
+ sidePanel2.add(GuiUtil.besidesPanel(computeLocationHeatMapButton));
+ sidePanel2.add(GuiUtil.besidesPanel(computeUSVStat));
+
+ freezeSettingsCheckBox.setSelected(false);
+ sidePanel2.add(GuiUtil.besidesPanel(freezeSettingsCheckBox));
+
+ computeVisionInFollowButton.addActionListener(this);
+ computeVisionWhenStoppedButton.addActionListener(this);
+ computeLocationHeatMapButton.addActionListener(this);
+ computeUSVStat.addActionListener(this);
+ exportEventsAsXML.addActionListener(this);
+
+ panel.add(sidePanel2, BorderLayout.CENTER);
+ saveImageButton.addActionListener(this);
+ exportSpeedButton.addActionListener(this);
+
+ loadXML(fileXML);
+
+ panel.add(imageComponent, BorderLayout.EAST);
+
+ imageComponent.setImage(imageChrono);
+
+ imageComponent.addMouseListener(this);
+ imageComponent.addMouseMotionListener(this);
+
+ buildResultImage();
+
+ }
+
+ public boolean isFreezed()
+ {
+ return freezeSettingsCheckBox.isSelected();
+ }
+
+ DecimalFormat decimalFormat = new DecimalFormat("00");
+
+ class Periode
+ {
+ int start;
+ int end;
+
+ public int length()
+ {
+ return end - start;
+ }
+
+ MouseEventType mouseEvent;
+ }
+
+ String nbFrameToDisplayInSecond(float value)
+ {
+ value = (int) ((10f * value) / FPS) / 10f;
+ return "" + value + "s";
+ }
+
+ double demiVisionDeSouris = 2f * Math.PI / 3f;
+
+ /**
+ * @return This function search for the first frame recorded in the XML file.
+ * It then shift all data to remove all zero data at the beginning of the sequence.
+ */
+ public int trimAnalysisRecord()
+ {
+ // look at max t val.
+
+ int tMin = Integer.MAX_VALUE;
+ int tMax = 0;
+ {
+ Iterator<Integer> integerIterator = mouseARecord.keySet().iterator();
+ while (integerIterator.hasNext())
+ {
+ int val = integerIterator.next();
+ if (val > tMax)
+ tMax = val;
+ if (val < tMin)
+ tMin = val;
+ }
+ }
+ {
+ Iterator<Integer> integerIterator = mouseBRecord.keySet().iterator();
+ while (integerIterator.hasNext())
+ {
+ int val = integerIterator.next();
+ if (val > tMax)
+ tMax = val;
+ if (val < tMin)
+ tMin = val;
+ }
+ }
+
+ HashMap<Integer, MouseInfoRecord> mouseARecordReSorted = new HashMap<Integer, MouseInfoRecord>();
+ HashMap<Integer, MouseInfoRecord> mouseBRecordReSorted = new HashMap<Integer, MouseInfoRecord>();
+
+ // shift the data
+ if (tMin != 0)
+ {
+ {
+ boolean warningHasBeenDisplayed = false;
+ // System.out.println("Shifting data");
+ for (int t = tMin; t < tMax; t++)
+ {
+ MouseInfoRecord a = mouseARecord.get(t);
+ MouseInfoRecord b = mouseBRecord.get(t);
+ if ((a == null) || (b == null))
+ {
+ // +" \n\n Re start the tracker to perform the tracking on this frame.
+ String problem = "A tracking frame is missing at t=" + t + " in file " + this.file + ".";
+ System.out.println(problem);
+ if (!warningHasBeenDisplayed)
+ {
+ MessageDialog.showDialog("<html><center>" + problem
+ + " <hr>This Message appears once per animal file. <br>See ouput to get the total list of missing frames</html>",
+ MessageDialog.ERROR_MESSAGE);
+ warningHasBeenDisplayed = true;
+ }
+ }
+ else
+ {
+ mouseARecordReSorted.put(t - tMin, mouseARecord.get(t));
+ mouseARecord.remove(t);
+
+ // mouseBRecord.put( t-tMin, mouseBRecord.get( t ) );
+ mouseBRecordReSorted.put(t - tMin, mouseBRecord.get(t));
+ mouseBRecord.remove(t);
+ }
+
+ // System.out.println( "t-TMin:" +(t-tMin) + " t:"+ t);
+
+ // mouseARecord.put( t-tMin, mouseARecord.get( t ) );
+
+ // mouseARecordReSorted.put( t-tMin, mouseARecord.get( t ) );
+ // mouseARecord.remove( t );
+ //
+ // //mouseBRecord.put( t-tMin, mouseBRecord.get( t ) );
+ // mouseBRecordReSorted.put( t-tMin, mouseBRecord.get( t ) );
+ // mouseBRecord.remove( t );
+ }
+ }
+
+ mouseARecord = mouseARecordReSorted;
+ mouseBRecord = mouseBRecordReSorted;
+ }
+
+ // System.out.println( "--- check mouse record ");
+ //
+ // MouseInfoRecord test = mouseARecord.get( 4471 );
+ // System.out.println( "contain object ? " + mouseARecord.containsKey( 4471 ) );
+ // System.out.println( "record is " + test );
+
+ // // test
+ // for ( int t = tMin ; t< mouseARecord.size() ; t++ )
+ // {
+ // MouseInfoRecord info = mouseARecord.get( t );
+ // if ( info == null )
+ // {
+ // System.out.println( "error at t:" + t );
+ // System.out.println( "null" );
+ // }
+ //
+ //// mouseARecord.put( t-tMin, mouseARecord.get( t ) );
+ //// mouseARecord.remove( t );
+ //
+ //// mouseBRecord.put( t-tMin, mouseBRecord.get( t ) );
+ //// mouseBRecord.remove( t );
+ // }
+
+ return tMin;
+ }
+
+ public void buildResultImage()
+ {
+
+ ArrayList<Periode> eventContactList = new ArrayList<Periode>();
+
+ Icy.getMainInterface().getSwimmingPool().remove(swimmingObject);
+ animal = new Animal(file.getName());
+ swimmingObject = new SwimmingObject(animal);
+
+ // // look at max t val.
+ //
+ // int tMin = Integer.MAX_VALUE;
+ // int tMax = 0;
+ // {
+ // Iterator<Integer> integerIterator = mouseARecord.keySet().iterator();
+ // while ( integerIterator.hasNext() )
+ // {
+ // int val = integerIterator.next();
+ // if ( val > tMax ) tMax = val;
+ // if ( val < tMin ) tMin = val;
+ // }
+ // }
+ // {
+ // Iterator<Integer> integerIterator = mouseBRecord.keySet().iterator();
+ // while ( integerIterator.hasNext() )
+ // {
+ // int val = integerIterator.next();
+ // if ( val > tMax ) tMax = val;
+ // if ( val < tMin ) tMin = val;
+ // }
+ // }
+
+ // trimAnalysisRecord();
+
+ int tMin = 0;
+
+ START_MINUTE = Integer.parseInt(computeImageStartMinuteTextField.getText());
+ NB_MINUTE = Integer.parseInt(computeImageNbMinuteTextField.getText());
+
+ // FPS = Integer.parseInt( compute )
+
+ firstFrame = (int) (tMin + START_MINUTE * 60 * FPS);
+ // lastFrame = tMax;
+
+ // {
+ lastFrame = (int) (firstFrame + NB_MINUTE * 60 * FPS);
+ // }
+
+ System.out.println("first frame : " + firstFrame);
+ System.out.println("last frame : " + lastFrame);
+
+ int tMax = lastFrame;
+
+ int nbExtraEvent = 15; // getNbExtraEvent( file );
+
+ imageChrono = new BufferedImage(lastFrame - firstFrame, 480 + nbExtraEvent * stepY,
+ BufferedImage.TYPE_INT_BGR);
+
+ imageComponent.setImage(imageChrono);
+
+ panel.updateUI();
+
+ int currentY = 0;
+
+ Graphics2D g2 = (Graphics2D) imageChrono.getGraphics();
+
+ // empty image
+
+ g2.fillRect(0, 0, imageChrono.getWidth(), imageChrono.getHeight());
+
+ // Clean up data
+ {
+
+ for (int t = 0; t < tMax; t++)
+ {
+ // System.out.println(t + " / " + tMax );
+ // System.out.println( t );
+ if (mouseARecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ if (mouseA == null)
+ {
+ System.out.println("no mouse A record at t=" + t);
+ }
+ mouseA.distanceIsInferiorToThreshold1 = false;
+ mouseA.distanceIsInferiorToThreshold2 = false;
+ mouseA.isEscaping = false;
+ mouseA.isEscapingFromOtherAndUnTouch = false;
+ mouseA.isGettingToOtherAndTouch = false;
+ mouseA.isGoingToTheOther = false;
+ mouseA.mouseGetToOtherMouseAndEscapeInOut = false;
+ mouseA.mouseGetToOtherMouseAndOtherEscapeInOut = false;
+ mouseA.eventA = false;
+ mouseA.eventB = false;
+ mouseA.eventC = false;
+ mouseA.eventD = false;
+ mouseA.isBehindTheOther = false;
+ mouseA.isBesideTheOther = false;
+ mouseA.thisHeadWithOtherGenitalContact = false;
+ }
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+ mouseB.distanceIsInferiorToThreshold1 = false;
+ mouseB.distanceIsInferiorToThreshold2 = false;
+ mouseB.isEscaping = false;
+ mouseB.isEscapingFromOtherAndUnTouch = false;
+ mouseB.isGettingToOtherAndTouch = false;
+ mouseB.isGoingToTheOther = false;
+ mouseB.mouseGetToOtherMouseAndEscapeInOut = false;
+ mouseB.mouseGetToOtherMouseAndOtherEscapeInOut = false;
+ mouseB.eventA = false;
+ mouseB.eventB = false;
+ mouseB.eventC = false;
+ mouseB.eventD = false;
+ mouseB.isBehindTheOther = false;
+ mouseB.isBesideTheOther = false;
+ mouseB.thisHeadWithOtherGenitalContact = false;
+ }
+ }
+ }
+
+ // DISPLAY TIME
+ {
+ g2.setColor(Color.black);
+
+ {
+ for (int t = 0; t < tMax; t++)
+ {
+
+ if (t % (FPS * 2) < 1)
+ {
+ g2.drawString(
+ "" + (int) (t / (FPS * 60)) + ":" + decimalFormat.format((int) (t / FPS % 60)),
+ t - firstFrame, currentY + 12);
+ g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
+ }
+
+ }
+ }
+ currentY += stepY;
+ imageComponent.stringList.add("Time");
+ }
+
+ {
+
+ // Label 2
+ // Distance de souris A a B est inferieure a SEUIL_DISTANCE_1
+ boolean event = false;
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine distanceLessThanThreshold1TimeLine = new EventTimeLine("Distance < thr 1",
+ EventType.DISTANCE_INFERIOR_THRESHOLD_1, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(distanceLessThanThreshold1TimeLine);
+
+ g2.setColor(Color.red);
+ for (int t = 0; t < tMax; t++)
+ {
+ // System.out.println("working on t=" + t );
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ // System.out.println("contain keys");
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float minDistance = Float.MAX_VALUE;
+ minDistance = getMin(minDistance,
+ (float) mouseA.bodyPosition.distance(mouseB.bodyPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.bodyPosition.distance(mouseB.headPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.bodyPosition.distance(mouseB.tailPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.headPosition.distance(mouseB.bodyPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.headPosition.distance(mouseB.headPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.headPosition.distance(mouseB.tailPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.tailPosition.distance(mouseB.bodyPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.tailPosition.distance(mouseB.headPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.tailPosition.distance(mouseB.tailPosition));
+
+ // System.out.println( "min distance = " + minDistance );
+
+ if (minDistance < SEUIL_DISTANCE_1)
+ {
+ distanceLessThanThreshold1TimeLine.addPunctualEvent(t - firstFrame);
+ mouseA.distanceIsInferiorToThreshold1 = true;
+ mouseB.distanceIsInferiorToThreshold1 = true;
+ }
+ else
+ {
+ mouseA.distanceIsInferiorToThreshold1 = false;
+ mouseB.distanceIsInferiorToThreshold1 = false;
+ }
+
+ }
+ }
+
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : distanceLessThanThreshold1TimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Distance less than THRESHOLD 1 nbEvent:" + nbEvent + " totalT:"
+ + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+
+ currentY += stepY;
+
+ imageComponent.stringList.add(string);
+
+ }
+
+ {
+ // LABEL 3
+ // Distance de souris A a B est inferieure a SEUIL_DISTANCE_2
+ boolean event = false;
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine distanceLessThanThreshold2TimeLine = new EventTimeLine("Distance < thr 2",
+ EventType.DISTANCE_INFERIOR_THRESHOLD_2, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(distanceLessThanThreshold2TimeLine);
+
+ g2.setColor(Color.orange);
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float minDistance = Float.MAX_VALUE;
+ minDistance = getMin(minDistance,
+ (float) mouseA.bodyPosition.distance(mouseB.bodyPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.bodyPosition.distance(mouseB.headPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.bodyPosition.distance(mouseB.tailPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.headPosition.distance(mouseB.bodyPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.headPosition.distance(mouseB.headPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.headPosition.distance(mouseB.tailPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.tailPosition.distance(mouseB.bodyPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.tailPosition.distance(mouseB.headPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.tailPosition.distance(mouseB.tailPosition));
+
+ if (minDistance < SEUIL_DISTANCE_2)
+ {
+ distanceLessThanThreshold2TimeLine.addPunctualEvent(t - firstFrame);
+ mouseA.distanceIsInferiorToThreshold2 = true;
+ mouseB.distanceIsInferiorToThreshold2 = true;
+ }
+ else
+ {
+ mouseA.distanceIsInferiorToThreshold2 = false;
+ mouseB.distanceIsInferiorToThreshold2 = false;
+ }
+
+ }
+ }
+
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : distanceLessThanThreshold2TimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Distance less than THRESHOLD 2 nbEvent:" + nbEvent + " totalT:"
+ + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+
+ currentY += stepY;
+
+ imageComponent.stringList.add(string);
+ }
+
+ {
+ // LABEL 4
+ // Head A - Head B SEUIL_DISTANCE_HEAD_HEAD
+ boolean event = false;
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine OralOralTimeLine = new EventTimeLine("Oral-Oral", EventType.ORAL_ORAL,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(OralOralTimeLine);
+
+ g2.setColor(Color.black);
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float minDistance = Float.MAX_VALUE;
+ minDistance = getMin(minDistance,
+ (float) mouseA.headPosition.distance(mouseB.headPosition));
+ if (minDistance < SEUIL_DISTANCE_HEAD_HEAD)
+ {
+ OralOralTimeLine.addPunctualEvent(t - firstFrame);
+
+ }
+ else
+ {
+
+ }
+ }
+ }
+
+ // display
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : OralOralTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Head - Head : nbevent: " + nbEvent + " TotalT=" + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+
+ currentY += stepY;
+ imageComponent.stringList.add(string);
+
+ }
+ {
+ // LABEL 5
+ // Head A - Genital B SEUIL_DISTANCE_HEAD_GENITAL
+ boolean event = false;
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("Oral A - Genital B", EventType.ORAL_A_GENITAL_B,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ g2.setColor(Color.RED);
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float minDistance = Float.MAX_VALUE;
+ minDistance = getMin(minDistance,
+ (float) mouseA.headPosition.distance(mouseB.tailPosition));
+ if (minDistance < SEUIL_DISTANCE_HEAD_GENITAL)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ mouseA.thisHeadWithOtherGenitalContact = true;
+
+ }
+ else
+ {
+
+ }
+ }
+ }
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ g2.drawLine(0, currentY - 1, imageChrono.getWidth(), currentY - 1);
+ String string = "Head A - Genital B nbEvent:" + nbEvent + " TotalT:" + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+
+ currentY += stepY;
+ imageComponent.stringList.add(string);
+
+ }
+ {
+ // LABEL 6
+ // Head B - Genital A SEUIL_DISTANCE_HEAD_GENITAL
+ boolean event = false;
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("Oral B - Genital A", EventType.ORAL_B_GENITAL_A,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ g2.setColor(Color.GREEN);
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float minDistance = Float.MAX_VALUE;
+ minDistance = getMin(minDistance,
+ (float) mouseA.tailPosition.distance(mouseB.headPosition));
+ if (minDistance < SEUIL_DISTANCE_HEAD_GENITAL)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ mouseB.thisHeadWithOtherGenitalContact = true;
+
+ }
+ else
+ {
+
+ }
+ }
+ }
+
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Head B - Genital A : nbEvent:" + nbEvent + " totalT:"
+ + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+ {
+ // Mouse A is behind Mouse B
+ boolean event = false;
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("Mouse A behind B (any distance)", EventType.A_BEHIND_B,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float mouseABodyToMouseBTail = (float) mouseA.bodyPosition.distance(mouseB.tailPosition);
+ float mouseABodyToMouseBHead = (float) mouseA.bodyPosition.distance(mouseB.headPosition);
+
+ if (mouseABodyToMouseBTail < mouseABodyToMouseBHead)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ mouseA.isBehindTheOther = true;
+
+ }
+ else
+ {
+
+ }
+ }
+ }
+
+ g2.setColor(Color.RED);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ g2.drawLine(0, currentY - 1, imageChrono.getWidth(), currentY - 1);
+
+ String string = "Mouse A is behind B nbevent:" + nbEvent + " totalT:" + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse B is behind Mouse A
+ boolean event = false;
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("Mouse B behind A (any distance)", EventType.B_BEHIND_A,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float mouseBBodyToMouseATail = (float) mouseB.bodyPosition.distance(mouseA.tailPosition);
+ float mouseBBodyToMouseAHead = (float) mouseB.bodyPosition.distance(mouseA.headPosition);
+
+ if (mouseBBodyToMouseATail < mouseBBodyToMouseAHead)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ mouseB.isBehindTheOther = true;
+
+ }
+ else
+ {
+ event = false;
+ }
+ }
+ }
+
+ g2.setColor(Color.GREEN);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse B is behind A nbevent:" + nbEvent + " totalT:" + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+ currentY += stepY;
+ }
+ {
+ // Mice are next to the each other and body distance < DISTANCE_2 (same way)
+ // Calcul par produit scalaire. si positif meme sens.
+ boolean event = false;
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("Mouse next to each other (same way) < distance 2",
+ EventType.BESIDE_SAME_WAY, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float mouseABodyToMouseBBody = (float) mouseA.bodyPosition.distance(mouseB.bodyPosition);
+ float mouseAHeadToMouseBHead = (float) mouseA.headPosition.distance(mouseB.headPosition);
+
+ double vectSourisAX = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
+ double vectSourisAY = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
+ double vectSourisBX = mouseB.headPosition.getX() - mouseB.bodyPosition.getX();
+ double vectSourisBY = mouseB.headPosition.getY() - mouseB.bodyPosition.getY();
+
+ double produitScalaire = vectSourisAX * vectSourisBX + vectSourisAY * vectSourisBY;
+ double distance = Double.parseDouble(distance1TextField.getText());
+
+ if (produitScalaire >= 0 && mouseAHeadToMouseBHead < SEUIL_DISTANCE_1
+ && mouseABodyToMouseBBody < SEUIL_DISTANCE_1)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ mouseA.isBesideTheOther = true;
+ mouseB.isBesideTheOther = true;
+
+ }
+ else
+ {
+
+ }
+
+ }
+ }
+
+ g2.setColor(Color.DARK_GRAY);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mice are next to the each other and body distance < DISTANCE_2 (same way) nbevent:"
+ + nbEvent + " totalT:" + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+ currentY += stepY;
+ }
+ {
+ // Mice are next to the each other and body distance < DISTANCE_2 (opposite way)
+ boolean event = false;
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("Mouse next to each other (opposite way) < distance 2",
+ EventType.BESIDE_OPPOSITE_WAY, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double vectSourisAX = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
+ double vectSourisAY = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
+ double vectSourisBX = mouseB.headPosition.getX() - mouseB.bodyPosition.getX();
+ double vectSourisBY = mouseB.headPosition.getY() - mouseB.bodyPosition.getY();
+
+ double produitScalaire = vectSourisAX * vectSourisBX + vectSourisAY * vectSourisBY;
+
+ float mouseABodyToMouseBHead = (float) mouseA.bodyPosition.distance(mouseB.headPosition);
+ float mouseAHeadToMouseBBody = (float) mouseA.headPosition.distance(mouseB.bodyPosition);
+
+ if (produitScalaire < 0 && mouseABodyToMouseBHead < SEUIL_DISTANCE_1
+ && mouseAHeadToMouseBBody < SEUIL_DISTANCE_1)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ }
+ else
+ {
+
+ }
+
+ }
+ }
+
+ g2.setColor(Color.BLACK);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mice are next to the each other and body distance < DISTANCE_2 (opposite) nbevent:"
+ + nbEvent + " totalT:" + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ /** frameWindow est utilisé pour lisser le calcul de deplacement entre deux points de temps. t-framewindow et t+frameWindow */
+ int frameWindow = 6; // 5
+
+ {
+ EventTimeLine eventTimeLine = new EventTimeLine("Mouse A speed", EventType.MOUSE_A_SPEED,
+ TimeLineCategory.USE_DISCRETE_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ // Mice A speed is from 0 to SPEED_THRESHOLD_1
+ float nbVal = 0;
+ float totalDistance = 0;
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t - frameWindow))
+ if (mouseBRecord.containsKey(t - frameWindow))
+ if (mouseARecord.containsKey(t + frameWindow))
+ if (mouseBRecord.containsKey(t + frameWindow))
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
+ MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
+ MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
+ MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float distance = (float) mouseAprev.bodyPosition
+ .distance(mouseAnext.bodyPosition);
+ distance /= (float) (frameWindow * 2 + 1); // pour obtenir une vitesse par frame.
+
+ nbVal++;
+ totalDistance += distance;
+
+ mouseA.speed = distance;
+
+ eventTimeLine.addValue(t - firstFrame, distance);
+
+ if (distance <= SPEED_THRESHOLD_1)
+ {
+ g2.setColor(Color.BLACK);
+ g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
+ }
+ if ((distance > SPEED_THRESHOLD_1) && (distance < SPEED_THRESHOLD_2))
+ {
+ g2.setColor(Color.DARK_GRAY);
+ g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
+ }
+ if ((distance >= SPEED_THRESHOLD_2))
+ {
+ g2.setColor(Color.GRAY);
+ g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
+ }
+
+ }
+ }
+
+ g2.setColor(Color.red);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse A speed slow=black fast=gray mean speed: " + totalDistance / nbVal;
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ EventTimeLine eventTimeLine = new EventTimeLine("Mouse B speed", EventType.MOUSE_B_SPEED,
+ TimeLineCategory.USE_DISCRETE_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ // Mice B speed is from 0 to SPEED_THRESHOLD_1
+ float nbVal = 0;
+ float totalDistance = 0;
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t - frameWindow))
+ if (mouseBRecord.containsKey(t - frameWindow))
+ if (mouseARecord.containsKey(t + frameWindow))
+ if (mouseBRecord.containsKey(t + frameWindow))
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
+ MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
+ MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
+ MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float distance = (float) mouseBprev.bodyPosition
+ .distance(mouseBnext.bodyPosition);
+ distance /= (float) (frameWindow * 2 + 1); // pour obtenir une vitesse par frame.
+
+ mouseB.speed = distance;
+ nbVal++;
+ totalDistance += distance;
+
+ eventTimeLine.addValue(t - firstFrame, distance);
+
+ if (distance <= SPEED_THRESHOLD_1)
+ {
+ g2.setColor(Color.BLACK);
+ g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
+ }
+ if ((distance > SPEED_THRESHOLD_1) && (distance < SPEED_THRESHOLD_2))
+ {
+ g2.setColor(Color.DARK_GRAY);
+ g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
+ }
+ if ((distance >= SPEED_THRESHOLD_2))
+ {
+ g2.setColor(Color.GRAY);
+ g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
+ }
+
+ }
+ }
+ g2.setColor(Color.red);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse B speed slow=black fast=gray mean speed: " + totalDistance / nbVal;
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+ currentY += stepY;
+ }
+
+ {
+ // Mouse A Stop
+ boolean event = false;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("A Stop", EventType.A_STOP,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t - frameWindow))
+ if (mouseBRecord.containsKey(t - frameWindow))
+ if (mouseARecord.containsKey(t + frameWindow))
+ if (mouseBRecord.containsKey(t + frameWindow))
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
+ MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
+ MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
+ MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceTPrev = mouseAprev.bodyPosition
+ .distance(mouseBprev.bodyPosition);
+ double distanceTNext = mouseAnext.bodyPosition
+ .distance(mouseBnext.bodyPosition);
+
+ if (mouseA.speed < SPEED_THRESHOLD_1)
+ {
+
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ }
+ else
+ {
+ event = false;
+ }
+
+ }
+ }
+
+ g2.setColor(Color.red);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "A Stop : nbEvent : " + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse B Stop
+ boolean event = false;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("B Stop", EventType.B_STOP,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t - frameWindow))
+ if (mouseBRecord.containsKey(t - frameWindow))
+ if (mouseARecord.containsKey(t + frameWindow))
+ if (mouseBRecord.containsKey(t + frameWindow))
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
+ MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
+ MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
+ MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceTPrev = mouseAprev.bodyPosition
+ .distance(mouseBprev.bodyPosition);
+ double distanceTNext = mouseAnext.bodyPosition
+ .distance(mouseBnext.bodyPosition);
+
+ if (mouseB.speed < SPEED_THRESHOLD_1)
+ {
+
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ }
+ else
+ {
+ event = false;
+ }
+
+ }
+ }
+
+ g2.setColor(Color.green);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "B Stop : nbEvent : " + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse A Speed > Mouse B Speed & Mouse A getting to B
+ boolean event = false;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("A Speed > B Speed & A GET TO B",
+ EventType.A_SPEED_HIGHER_THAN_B_SPEED_AND_A_GET_TO_B, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t - frameWindow))
+ if (mouseBRecord.containsKey(t - frameWindow))
+ if (mouseARecord.containsKey(t + frameWindow))
+ if (mouseBRecord.containsKey(t + frameWindow))
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
+ MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
+ MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
+ MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceTPrev = mouseAprev.bodyPosition
+ .distance(mouseBprev.bodyPosition);
+ double distanceTNext = mouseAnext.bodyPosition
+ .distance(mouseBnext.bodyPosition);
+
+ if (mouseA.speed > mouseB.speed)
+ {
+ if (distanceTPrev > distanceTNext)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ mouseA.isGoingToTheOther = true;
+
+ }
+ else
+ {
+
+ }
+ }
+ else
+ {
+ event = false;
+ }
+
+ }
+ }
+
+ g2.setColor(Color.red);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse A Speed > Mouse B Speed & Mouse A getting to B : nbEvent : " + nbEvent
+ + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+ {
+ // Mouse B Speed > Mouse A Speed & Mouse B getting to A
+ boolean event = false;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("B Speed > A Speed & B GET TO A",
+ EventType.B_SPEED_HIGHER_THAN_A_SPEED_AND_B_GET_TO_A, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t - frameWindow))
+ if (mouseBRecord.containsKey(t - frameWindow))
+ if (mouseARecord.containsKey(t + frameWindow))
+ if (mouseBRecord.containsKey(t + frameWindow))
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
+ MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
+ MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
+ MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceTPrev = mouseAprev.bodyPosition
+ .distance(mouseBprev.bodyPosition);
+ double distanceTNext = mouseAnext.bodyPosition
+ .distance(mouseBnext.bodyPosition);
+
+ if (mouseB.speed > mouseA.speed)
+ {
+ if (distanceTPrev > distanceTNext)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ mouseB.isGoingToTheOther = true;
+
+ }
+ else
+ {
+
+ }
+ }
+ else
+ {
+ event = false;
+ }
+
+ }
+ }
+ g2.setColor(Color.green);
+
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse B Speed > Mouse A Speed & Mouse B getting to A : nbEvent : " + nbEvent
+ + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse A Speed > Mouse B Speed & Mouse A escaping from to B
+
+ boolean event = false;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("A Speed > B Speed & A escape B",
+ EventType.A_SPEED_HIGHER_THAN_B_SPEED_AND_A_ESCAPE_B, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t - frameWindow))
+ if (mouseBRecord.containsKey(t - frameWindow))
+ if (mouseARecord.containsKey(t + frameWindow))
+ if (mouseBRecord.containsKey(t + frameWindow))
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
+ MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
+ MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
+ MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceTPrev = mouseAprev.bodyPosition
+ .distance(mouseBprev.bodyPosition);
+ double distanceTNext = mouseAnext.bodyPosition
+ .distance(mouseBnext.bodyPosition);
+
+ if (mouseA.speed > mouseB.speed)
+ {
+ if (distanceTPrev < distanceTNext)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ mouseA.isEscaping = true;
+
+ }
+ else
+ {
+
+ mouseA.isEscaping = false;
+ }
+ }
+ else
+ {
+
+ }
+
+ }
+ }
+ g2.setColor(Color.red);
+
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse A Speed > Mouse B Speed & Mouse A escaping from B : nbEvent : " + nbEvent
+ + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse B Speed > Mouse A Speed & Mouse B escaping from A
+
+ boolean event = false;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("B Speed > A Speed & B escape A",
+ EventType.B_SPEED_HIGHER_THAN_A_SPEED_AND_B_ESCAPE_A, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t - frameWindow))
+ if (mouseBRecord.containsKey(t - frameWindow))
+ if (mouseARecord.containsKey(t + frameWindow))
+ if (mouseBRecord.containsKey(t + frameWindow))
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
+ MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
+ MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
+ MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceTPrev = mouseAprev.bodyPosition
+ .distance(mouseBprev.bodyPosition);
+ double distanceTNext = mouseAnext.bodyPosition
+ .distance(mouseBnext.bodyPosition);
+
+ if (mouseB.speed > mouseA.speed)
+ {
+ if (distanceTPrev < distanceTNext)
+ {
+
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ mouseB.isEscaping = true;
+
+ }
+ else
+ {
+ mouseB.isEscaping = false;
+
+ }
+ }
+ else
+ {
+
+ }
+
+ }
+ }
+ g2.setColor(Color.green);
+
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse B Speed > Mouse A Speed & Mouse B escaping from A : nbEvent : " + nbEvent
+ + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse A going to B and finishing with contact starting from no contact.
+
+ EventTimeLine eventTimeLine = new EventTimeLine(
+ "Mouse A going to B and finishing with contact starting from no contact",
+ EventType.A_GOTO_B_FINISH_CONTACT_START_NO_CONTACT, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbEvent = 0;
+ float total = 0;
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ if (mouseA.distanceIsInferiorToThreshold1) // contact
+ {
+ ArrayList<Integer> timeToFill = new ArrayList<Integer>();
+ // loop back if there is an approach
+ for (int t2 = t; t2 > 0; t2--)
+ {
+ if (mouseARecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
+ if (mouseAt2.isGoingToTheOther)
+ {
+ timeToFill.add(t2);
+
+ if (!mouseAt2.distanceIsInferiorToThreshold1)
+ {
+ for (int t3 = t2; t3 > 0; t3--)
+ {
+ if (mouseARecord.containsKey(t3))
+ {
+ MouseInfoRecord mouseAt3 = mouseARecord.get(t3);
+ if (mouseAt3.isGoingToTheOther)
+ {
+ timeToFill.add(t3);
+ }
+ else
+ {
+ break;
+ }
+ }
+ }
+ break;
+ }
+
+ }
+ else // sortie de la boucle de remontee
+ {
+ // check if we started from a position far from the other.
+ if (mouseAt2.distanceIsInferiorToThreshold1)
+ timeToFill.clear();
+ break;
+ }
+ }
+ }
+
+ // si le time to fill est >0 c'est qu'il a trouve qq chose.
+ // il faut maintenant avancer dans le temps jusqu a la fin de l evenement
+ if (timeToFill.size() > 0)
+ {
+ for (int t2 = t + 1; t2 < tMax; t2++)
+ {
+ MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
+ if (mouseAt2.isGoingToTheOther)
+ {
+ timeToFill.add(t2);
+ t = t2;
+ }
+ else
+ {
+ break;
+ }
+ }
+ }
+
+ for (int i = 0; i < timeToFill.size(); i++)
+ {
+ int index = timeToFill.get(i);
+ MouseInfoRecord mouseAt2 = mouseARecord.get(index);
+ mouseAt2.isGettingToOtherAndTouch = true;
+
+ eventTimeLine.addPunctualEvent(index - firstFrame);
+
+ }
+
+ }
+
+ }
+ }
+
+ g2.setColor(Color.red);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ // System.out.println( "event. StartFrame: " + eventCriteria.startFrame + " EndFrame: " + eventCriteria.endFrame );
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse A going to B and finishing with contact starting from no contact.: nbEvent : "
+ + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse B going to A and finishing with contact and starting from > Threshold Distance.
+
+ EventTimeLine eventTimeLine = new EventTimeLine(
+ "Mouse B going to A and finishing with contact and starting from no contact",
+ EventType.B_GOTO_A_FINISH_CONTACT_START_NO_CONTACT, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ if (mouseA.distanceIsInferiorToThreshold1) // contact
+ {
+
+ ArrayList<Integer> timeToFill = new ArrayList<Integer>();
+ // loop back if there is an approach
+ for (int t2 = t; t2 > 0; t2--)
+ {
+
+ if (mouseBRecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
+ if (mouseBt2.isGoingToTheOther)
+ {
+ timeToFill.add(t2);
+
+ if (!mouseBt2.distanceIsInferiorToThreshold1)
+ {
+ for (int t3 = t2; t3 > 0; t3--)
+ {
+ if (mouseBRecord.containsKey(t3))
+ {
+ MouseInfoRecord mouseBt3 = mouseBRecord.get(t3);
+ if (mouseBt3.isGoingToTheOther)
+ {
+ timeToFill.add(t3);
+ }
+ else
+ {
+ break;
+ }
+ }
+ }
+ break;
+ }
+
+ }
+ else // sortie de la boucle de remontee
+ {
+ // check if we started from a position far from the other.
+ if (mouseBt2.distanceIsInferiorToThreshold1)
+ timeToFill.clear();
+ break;
+ }
+ }
+ }
+
+ // si le time to fill est >0 c'est qu'il a trouve qq chose.
+ // il faut maintenant avancer dans le temps jusqu a la fin de l evenement
+ if (timeToFill.size() > 0)
+ {
+ for (int t2 = t + 1; t2 < tMax; t2++)
+ {
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
+ if (mouseBt2.isGoingToTheOther)
+ {
+ timeToFill.add(t2);
+ t = t2;
+ }
+ else
+ {
+ break;
+ }
+ }
+ }
+
+ g2.setColor(Color.green);
+ if (timeToFill.size() > 0)
+ nbEvent++;
+ total += timeToFill.size();
+ for (int i = 0; i < timeToFill.size(); i++)
+ {
+ int index = timeToFill.get(i);
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(index);
+ mouseBt2.isGettingToOtherAndTouch = true;
+ eventTimeLine.addPunctualEvent(index - firstFrame);
+
+ }
+
+ }
+
+ }
+ }
+
+ g2.setColor(Color.green);
+ // draw result
+
+ nbEvent = 0;
+ total = 0;
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse B going to A and finishing with contact starting from no contact.: nbEvent : "
+ + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse A escaping after contact. finish with out threshold.
+
+ EventTimeLine eventTimeLine = new EventTimeLine(
+ "Mouse A escaping after contact. finish with out threshold.",
+ EventType.A_ESCAPE_AFTER_CONTACT_FINISH_WITH_NO_CONTACT, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ if (mouseA.distanceIsInferiorToThreshold1) // contact
+ {
+ ArrayList<Integer> timeToFill = new ArrayList<Integer>();
+ // loop back if there is an approach
+ for (int t2 = t; t2 < Integer.MAX_VALUE; t2++)
+ {
+ if (mouseARecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
+ if (mouseAt2.isEscaping)
+ {
+ timeToFill.add(t2);
+
+ if (!mouseAt2.distanceIsInferiorToThreshold1)
+ {
+
+ for (int t3 = t2; t3 < tMax; t3++)
+ {
+ if (mouseARecord.containsKey(t3))
+ {
+ MouseInfoRecord mouseAt3 = mouseARecord.get(t3);
+ if (mouseAt3.isEscaping)
+ {
+ timeToFill.add(t3);
+ }
+ else
+ {
+ break;
+ }
+ }
+ }
+ break;
+ }
+
+ }
+ else // sortie de la boucle de remontee
+ {
+ // check if we started from a position far from the other.
+ if (mouseAt2.distanceIsInferiorToThreshold1)
+ timeToFill.clear();
+ break;
+ }
+ }
+ else
+ {
+ break;
+ }
+ }
+ g2.setColor(Color.red);
+ if (timeToFill.size() > 0)
+ nbEvent++;
+ total += timeToFill.size();
+
+ for (int i = 0; i < timeToFill.size(); i++)
+ {
+ int index = timeToFill.get(i);
+ MouseInfoRecord mouseAt2 = mouseARecord.get(index);
+ mouseAt2.isEscapingFromOtherAndUnTouch = true;
+ eventTimeLine.addPunctualEvent(index - firstFrame);
+
+ }
+ t += timeToFill.size();
+ }
+
+ }
+ }
+ g2.setColor(Color.red);
+
+ // draw result
+ nbEvent = 0;
+ total = 0;
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse A escaping after contact and finish out of distance threshold. : nbEvent : "
+ + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse B escaping after contact. finish with out threshold.
+
+ EventTimeLine eventTimeLine = new EventTimeLine(
+ "Mouse B escaping after contact. finish with out threshold.",
+ EventType.B_ESCAPE_AFTER_CONTACT_FINISH_WITH_NO_CONTACT, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ if (mouseA.distanceIsInferiorToThreshold1) // contact
+ {
+ ArrayList<Integer> timeToFill = new ArrayList<Integer>();
+ // loop back if there is an approach
+ for (int t2 = t; t2 < Integer.MAX_VALUE; t2++)
+ {
+ if (mouseBRecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
+ if (mouseBt2.isEscaping)
+ {
+ timeToFill.add(t2);
+
+ if (!mouseBt2.distanceIsInferiorToThreshold1)
+ {
+
+ for (int t3 = t2; t3 < tMax; t3++)
+ {
+ if (mouseBRecord.containsKey(t3))
+ {
+ MouseInfoRecord mouseBt3 = mouseBRecord.get(t3);
+ if (mouseBt3.isEscaping)
+ {
+ timeToFill.add(t3);
+ }
+ else
+ {
+ break;
+ }
+ }
+ }
+ break;
+ }
+
+ }
+ else
+ {
+
+ if (mouseBt2.distanceIsInferiorToThreshold1)
+ timeToFill.clear();
+ break;
+ }
+ }
+ else
+ {
+ break;
+ }
+ }
+ g2.setColor(Color.green);
+ if (timeToFill.size() > 0)
+ nbEvent++;
+ total += timeToFill.size();
+
+ for (int i = 0; i < timeToFill.size(); i++)
+ {
+ int index = timeToFill.get(i);
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(index);
+ mouseBt2.isEscapingFromOtherAndUnTouch = true;
+
+ eventTimeLine.addPunctualEvent(index - firstFrame);
+
+ }
+ t += timeToFill.size();
+ }
+
+ }
+ }
+ g2.setColor(Color.green);
+
+ nbEvent = 0;
+ total = 0;
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse B escaping after contact and finish out of distance threshold : nbEvent : "
+ + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse A get to mouse B and B escape with threshold distance in and out.
+
+ EventTimeLine eventTimeLine = new EventTimeLine("A get to B and B escape threshold in and out",
+ EventType.A_GOTO_B_AND_B_ESCAPE_THRESHOLD_IN_OUT, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ if (mouseA.isGettingToOtherAndTouch) // contact
+ {
+ ArrayList<Integer> timeToFill = new ArrayList<Integer>();
+
+ boolean step1ok = false;
+ boolean step2ok = false;
+ boolean step3ok = false;
+
+ int seeker = t;
+
+ // STEP 1
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseARecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
+ if (mouseAt2.isGettingToOtherAndTouch)
+ {
+ timeToFill.add(t2);
+ }
+ else // sortie de la boucle de remontee
+ {
+ step1ok = true;
+ break;
+ }
+ }
+ }
+
+ // STEP 2
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseARecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
+ if (mouseAt2.distanceIsInferiorToThreshold1)
+ {
+ timeToFill.add(t2);
+ }
+ else // sortie de la boucle de remontee
+ {
+ step2ok = true;
+ break;
+ }
+ }
+ }
+
+ // STEP 3
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseBRecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
+ if (mouseBt2.isEscapingFromOtherAndUnTouch)
+ {
+ timeToFill.add(t2);
+ step3ok = true;
+ }
+ else // sortie de la boucle de remontee
+ {
+ break;
+ }
+ }
+ }
+
+ if (!(step1ok && step2ok && step3ok))
+ {
+ timeToFill.clear();
+ }
+
+ g2.setColor(Color.red);
+ if (timeToFill.size() > 0)
+ nbEvent++;
+ total += timeToFill.size();
+
+ for (int i = 0; i < timeToFill.size(); i++)
+ {
+ int index = timeToFill.get(i);
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(index);
+ mouseBt2.isEscapingFromOtherAndUnTouch = true;
+
+ eventTimeLine.addPunctualEvent(index - firstFrame);
+
+ mouseARecord.get(index).mouseGetToOtherMouseAndOtherEscapeInOut = true;
+ }
+ t += timeToFill.size();
+ }
+
+ }
+ }
+
+ g2.setColor(Color.red);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ g2.drawLine(0, currentY + 1, imageChrono.getWidth(), currentY + 1);
+
+ String string = "Mouse A get to mouse B and B escape with threshold distance in and out : nbEvent : "
+ + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse B get to mouse A and A escape with threshold distance in and out
+
+ EventTimeLine eventTimeLine = new EventTimeLine("B get to A and A escape threshold in and out",
+ EventType.B_GOTO_A_AND_A_ESCAPE_THRESHOLD_IN_OUT, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ if (mouseB.isGettingToOtherAndTouch) // contact
+ {
+ ArrayList<Integer> timeToFill = new ArrayList<Integer>();
+ // loop forward to the contact.
+
+ boolean step1ok = false;
+ boolean step2ok = false;
+ boolean step3ok = false;
+
+ int seeker = t;
+
+ // STEP 1
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseBRecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
+ if (mouseBt2.isGettingToOtherAndTouch)
+ {
+ timeToFill.add(t2);
+ }
+ else // sortie de la boucle de remontee
+ {
+ step1ok = true;
+ break;
+ }
+ }
+ }
+
+ // STEP 2
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseBRecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
+ if (mouseBt2.distanceIsInferiorToThreshold1)
+ {
+ timeToFill.add(t2);
+ }
+ else // sortie de la boucle de remontee
+ {
+ step2ok = true;
+ break;
+ }
+ }
+ }
+
+ // STEP 3
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseARecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
+ if (mouseAt2.isEscapingFromOtherAndUnTouch)
+ {
+ timeToFill.add(t2);
+ step3ok = true;
+ }
+ else // sortie de la boucle de remontee
+ {
+ break;
+ }
+ }
+ }
+
+ if (!(step1ok && step2ok && step3ok))
+ {
+ timeToFill.clear();
+ }
+
+ g2.setColor(Color.green);
+ if (timeToFill.size() > 0)
+ nbEvent++;
+ total += timeToFill.size();
+
+ for (int i = 0; i < timeToFill.size(); i++)
+ {
+ int index = timeToFill.get(i);
+ MouseInfoRecord mouseAt2 = mouseARecord.get(index);
+ mouseAt2.isEscapingFromOtherAndUnTouch = true;
+
+ eventTimeLine.addPunctualEvent(index - firstFrame);
+
+ mouseBRecord.get(index).mouseGetToOtherMouseAndOtherEscapeInOut = true;
+ }
+ t += timeToFill.size();
+ }
+
+ }
+ }
+ g2.setColor(Color.green);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse B get to mouse A and A escape with threshold distance in and out : nbEvent : "
+ + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse A get to mouse B and A escape with threshold distance in and out.
+
+ EventTimeLine eventTimeLine = new EventTimeLine("A get to B and A escape threshold in and out",
+ EventType.A_GOTO_B_AND_A_ESCAPE_THRESHOLD_IN_OUT, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ if (mouseA.isGettingToOtherAndTouch) // contact
+ {
+ ArrayList<Integer> timeToFill = new ArrayList<Integer>();
+ // loop forward to the contact.
+
+ boolean step1ok = false;
+ boolean step2ok = false;
+ boolean step3ok = false;
+
+ int seeker = t;
+
+ // STEP 1
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseARecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
+ if (mouseAt2.isGettingToOtherAndTouch)
+ {
+ timeToFill.add(t2);
+ step1ok = true; // maintenant ici
+ }
+ else // sortie de la boucle de remontee
+ {
+ // step1ok = true; avant la
+ break;
+ }
+ }
+ }
+
+ // STEP 2
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseARecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
+ if (mouseAt2.distanceIsInferiorToThreshold1)
+ {
+ timeToFill.add(t2);
+ step2ok = true; // mainetnant ici
+ }
+ else // sortie de la boucle de remontee
+ {
+ // step2ok = true; avant la
+ break;
+ }
+ }
+ }
+
+ // STEP 3
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseARecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
+ if (mouseAt2.isEscapingFromOtherAndUnTouch)
+ {
+ timeToFill.add(t2);
+ step3ok = true;
+ }
+ else // sortie de la boucle de remontee
+ {
+ break;
+ }
+ }
+ }
+
+ if (!(step1ok && step2ok && step3ok))
+ {
+ timeToFill.clear();
+ }
+
+ g2.setColor(Color.red);
+ if (timeToFill.size() > 0)
+ nbEvent++;
+ total += timeToFill.size();
+ for (int i = 0; i < timeToFill.size(); i++)
+ {
+ int index = timeToFill.get(i);
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(index);
+ mouseBt2.isEscapingFromOtherAndUnTouch = true;
+
+ eventTimeLine.addPunctualEvent(index - firstFrame);
+
+ mouseARecord.get(index).mouseGetToOtherMouseAndEscapeInOut = true;
+ }
+ t += timeToFill.size();
+ }
+
+ }
+ }
+ g2.setColor(Color.red);
+
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ g2.drawLine(0, currentY + 1, imageChrono.getWidth(), currentY + 1);
+ String string = "Mouse A get to mouse B and A escape with threshold distance in and out : nbEvent : "
+ + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse B get to mouse A and B escape with threshold distance in and out
+
+ EventTimeLine eventTimeLine = new EventTimeLine("B get to A and B escape threshold in and out",
+ EventType.B_GOTO_A_AND_B_ESCAPE_THRESHOLD_IN_OUT, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ if (mouseB.isGettingToOtherAndTouch) // contact
+ {
+ ArrayList<Integer> timeToFill = new ArrayList<Integer>();
+ // loop forward to the contact.
+
+ boolean step1ok = false;
+ boolean step2ok = false;
+ boolean step3ok = false;
+
+ int seeker = t;
+
+ // STEP 1
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseBRecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
+ if (mouseBt2.isGettingToOtherAndTouch)
+ {
+ timeToFill.add(t2);
+ step1ok = true; // maintenant ici
+ }
+ else // sortie de la boucle de remontee
+ {
+ // avant ici step1ok = true;
+ break;
+ }
+ }
+ }
+
+ // STEP 2
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseBRecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
+ if (mouseBt2.distanceIsInferiorToThreshold1)
+ {
+ timeToFill.add(t2);
+ step2ok = true; // mis ici
+ }
+ else // sortie de la boucle de remontee
+ {
+ // step2ok = true; avant ici
+ break;
+ }
+ }
+ }
+
+ // STEP 3
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseBRecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
+ if (mouseBt2.isEscapingFromOtherAndUnTouch)
+ {
+ timeToFill.add(t2);
+ step3ok = true;
+ }
+ else // sortie de la boucle de remontee
+ {
+ break;
+ }
+ }
+ }
+
+ if (!(step1ok && step2ok && step3ok))
+ {
+ timeToFill.clear();
+ }
+
+ g2.setColor(Color.green);
+ if (timeToFill.size() > 0)
+ nbEvent++;
+ total += timeToFill.size();
+
+ for (int i = 0; i < timeToFill.size(); i++)
+ {
+ int index = timeToFill.get(i);
+ MouseInfoRecord mouseAt2 = mouseARecord.get(index);
+ mouseAt2.isEscapingFromOtherAndUnTouch = true;
+ eventTimeLine.addPunctualEvent(index - firstFrame);
+
+ mouseBRecord.get(index).mouseGetToOtherMouseAndEscapeInOut = true;
+ }
+ t += timeToFill.size();
+
+ }
+
+ }
+ }
+ g2.setColor(Color.green);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse B get to mouse A and B escape with threshold distance in and out : nbEvent : "
+ + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+
+ {
+ // Event de poursuite.
+ // A Poursuit B
+ // =
+ // A est en mouvement
+ // B est en mouvement
+ // A est derriere B ou A est sur le cote de B
+ // Distance A-B inferieure a Threshold 2 ( le plus loin )
+
+ EventTimeLine eventTimeLine = new EventTimeLine("A follow B", EventType.A_FOLLOW_B,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventCriteria currentCriteria = null;
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceHeadABodyB = mouseA.headPosition.distanceSq(mouseB.bodyPosition);
+ double distanceHeadAHeadB = mouseA.headPosition.distanceSq(mouseB.headPosition);
+ double distanceBodyABodyB = mouseA.bodyPosition.distanceSq(mouseB.bodyPosition);
+ double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq(mouseB.headPosition);
+
+ if (mouseB.distanceIsInferiorToThreshold2 // moins precis mais moins de bruit
+
+ && mouseA.speed > SPEED_THRESHOLD_2 && mouseB.speed > SPEED_THRESHOLD_2
+ && (mouseA.isBehindTheOther || mouseA.isBesideTheOther)
+
+ ) // contact threshold 2
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ }
+
+ }
+ }
+ // filter results
+
+ eventTimeLine.removeEventLessThanLength(3);
+
+ g2.setColor(Color.RED);
+ // display result.
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse A poursuit B : nbEvent : " + nbEvent + " total time: " + total / FPS + "s";
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+
+ {
+ // A est derriere B et B est derriere A
+ // A est à l'arret et B est à l'arret
+ // distance superieure a Threshold 2
+ // back to back
+ // angle formé inferieur a ANGLE dans le code ( 0.52d Rad )
+
+ EventTimeLine eventTimeLine = new EventTimeLine("back to back", EventType.A_BEHIND_B_AND_B_BEHIND_A,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventCriteria currentCriteria = null;
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceHeadABodyB = mouseA.headPosition.distanceSq(mouseB.bodyPosition);
+ double distanceHeadAHeadB = mouseA.headPosition.distanceSq(mouseB.headPosition);
+ double distanceBodyABodyB = mouseA.bodyPosition.distanceSq(mouseB.bodyPosition);
+ double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq(mouseB.headPosition);
+
+ double VAx = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
+ double VAy = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
+ double angleA = Math.atan2(VAy, VAx);
+
+ double VBx = mouseB.headPosition.getX() - mouseB.bodyPosition.getX();
+ double VBy = mouseB.headPosition.getY() - mouseB.bodyPosition.getY();
+ double angleB = Math.atan2(VBy, VBx);
+
+ // angle fait par le segment qui va de la souris A a la souris B.
+
+ double VABx = mouseB.bodyPosition.getX() - mouseA.bodyPosition.getX();
+ double VABy = mouseB.bodyPosition.getY() - mouseA.bodyPosition.getY();
+ double angleAB = Math.atan2(VABy, VABx);
+
+ angleB = angleB - Math.PI;
+
+ // on recale les angles pour les rendres comparables
+
+ // recherche de la plus petite difference entre les angles.
+
+ double minAngle = Double.MAX_VALUE;
+ for (double a = -4; a < 5; a++)
+ {
+ double testVal = Math.abs(angleB + 2 * Math.PI * a - angleA);
+ if (testVal < minAngle)
+ minAngle = testVal;
+ }
+
+ double minAngleABwithA = Double.MAX_VALUE;
+ for (double a = -4; a < 5; a++)
+ {
+ double testVal = Math.abs(angleA + Math.PI * a - angleAB);
+ if (testVal < minAngleABwithA)
+ minAngleABwithA = testVal;
+ }
+
+ double minAngleABwithB = Double.MAX_VALUE;
+ for (double a = -4; a < 5; a++)
+ {
+ double testVal = Math.abs(angleB + Math.PI * a - angleAB);
+ if (testVal < minAngleABwithB)
+ minAngleABwithB = testVal;
+ }
+
+ if (mouseA.speed < SPEED_THRESHOLD_1 && mouseB.speed < SPEED_THRESHOLD_1)
+ if (!mouseA.distanceIsInferiorToThreshold2) // distance > Threshold 2
+ if (minAngle < 0.52d && mouseA.isBehindTheOther && mouseB.isBehindTheOther) // && !mouseA.distanceIsInferiorToThreshold1 )
+ // // premier argument trouve angle opposé et
+ // l'autre force culcul
+ if (minAngleABwithA < 0.52d)
+ if (minAngleABwithB < 0.52d)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+ }
+
+ }
+ }
+ // filter results
+
+ eventTimeLine.removeEventLessThanLength(3);
+
+ g2.setColor(Color.gray);
+ // display result.
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Back to back: nbEvent : " + nbEvent + " total time: " + total / FPS + "s";
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+
+ // A regarde l'autre souris
+ //
+ {
+ EventTimeLine eventTimeLine = new EventTimeLine("A can see B", EventType.A_CAN_SEE_B,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventCriteria currentCriteria = null;
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ // ---------------------
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceHeadABodyB = mouseA.headPosition.distanceSq(mouseB.bodyPosition);
+ double distanceHeadAHeadB = mouseA.headPosition.distanceSq(mouseB.headPosition);
+ double distanceBodyABodyB = mouseA.bodyPosition.distanceSq(mouseB.bodyPosition);
+ double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq(mouseB.headPosition);
+
+ double VAx = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
+ double VAy = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
+ double angleA = Math.atan2(VAy, VAx);
+
+ // teste A dans la vue.
+
+ double VABx = mouseA.headPosition.getX() - mouseB.headPosition.getX();
+ double VABy = mouseA.headPosition.getY() - mouseB.headPosition.getY();
+ double angleBA = Math.atan2(VABy, VABx) + Math.PI;
+
+ boolean eventIsOk = true;
+
+ // if ( angleMin( angleBA , angleB ) < Math.PI / 2f )
+ if (angleMin(angleBA, angleA) < demiVisionDeSouris)
+ {
+ // eventTimeLine.addPunctualEvent(t - firstFrame );
+ }
+ else
+ {
+ eventIsOk = false;
+ }
+
+ if (mouseA.distanceIsInferiorToThreshold2)
+ {
+ eventIsOk = false;
+ }
+ // ------------------------
+ // flag l'event s'il est bon.
+ if (eventIsOk)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+ }
+
+ }
+ }
+ // filter results
+
+ eventTimeLine.removeEventLessThanLength(3);
+
+ g2.setColor(Color.RED);
+ // display result.
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse A can see B: nbEvent : " + nbEvent + " total time: " + total / FPS + "s";
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+
+ }
+
+ // B regarde l'autre souris
+ //
+ {
+ EventTimeLine eventTimeLine = new EventTimeLine("B can see A", EventType.B_CAN_SEE_A,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventCriteria currentCriteria = null;
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceHeadABodyB = mouseA.headPosition.distanceSq(mouseB.bodyPosition);
+ double distanceHeadAHeadB = mouseA.headPosition.distanceSq(mouseB.headPosition);
+ double distanceBodyABodyB = mouseA.bodyPosition.distanceSq(mouseB.bodyPosition);
+ double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq(mouseB.headPosition);
+
+ double VBx = mouseB.headPosition.getX() - mouseB.bodyPosition.getX();
+ double VBy = mouseB.headPosition.getY() - mouseB.bodyPosition.getY();
+ double angleB = Math.atan2(VBy, VBx);
+
+ // teste A dans la vue.
+
+ double VBAx = mouseB.headPosition.getX() - mouseA.headPosition.getX();
+ double VBAy = mouseB.headPosition.getY() - mouseA.headPosition.getY();
+ double angleBA = Math.atan2(VBAy, VBAx) + Math.PI;
+
+ boolean eventIsOk = true;
+
+ if (angleMin(angleBA, angleB) < demiVisionDeSouris)
+ {
+
+ }
+ else
+ {
+ eventIsOk = false;
+ }
+
+ // flag l'event s'il est bon.
+ if (eventIsOk)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+ }
+
+ }
+ }
+ // filter results
+
+ eventTimeLine.removeEventLessThanLength(3);
+
+ g2.setColor(Color.GREEN);
+ // display result.
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse B can see A: nbEvent : " + nbEvent + " total time: " + total / FPS + "s";
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
- XLSUtil.setCellString( page, currentColumn, row, "nb corr event " );
- XLSUtil.setCellString( page, currentColumn+1, row, "% corr event" );
-// 1
-// 1
-// 2
- row+=2;
+ }
- for ( EventTimeLine eventTimeLineCandidate : animal.eventTimeLineList )
- {
- XLSUtil.setCellString( page , 0, row, eventTimeLineCandidate.criteriaName );
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- int nbEventCandidate = eventTimeLineCandidate.eventList.size();
- // XLSUtil.setCellNumber( page, currentColumn, row, nbEventCandidate );
+ currentY = loadExtraLabelXMLFile(file, currentY, g2);
+ currentY = loadExtraLabelAviSoftTXTFile(file, currentY, g2);
- int nbOccur = 0;
+ Icy.getMainInterface().getSwimmingPool().add(swimmingObject);
- // check how many time the eventUSV occurs at the same time as the candidateEvent
- for ( EventCriteria eventUSV : eventTimeLineWatched.eventList )
- {
+ }
- for ( EventCriteria eventCandidate : eventTimeLineCandidate.eventList )
- {
- if ( isEventOverlapping( eventUSV , eventCandidate ) )
- {
- nbOccur++;
- break;
- }
+ private File getExtraXMLFile(File originalFile)
+ {
+ File extraFile = new File(FileUtil.setExtension(file.getAbsolutePath(), ".extra.xml"));
+ return extraFile;
+ }
- }
+ private File getExtraAviSoftTXTFile(File originalFile)
+ {
+ File extraFile = new File(FileUtil.setExtension(file.getAbsolutePath(), ".avisoft.txt"));
+ return extraFile;
+ }
- }
+ private File getExtraAviSoftXLSFile(File originalFile)
+ {
+ File extraFile = new File(FileUtil.setExtension(file.getAbsolutePath(), ".avisoft.xls"));
+ return extraFile;
+ }
- float ratio = 100f * (float)nbOccur / (float)eventTimeLineWatched.eventList.size();
- XLSUtil.setCellNumber( page, currentColumn , row, nbOccur );
- XLSUtil.setCellNumber( page, currentColumn+1, row, ratio );
+ private int getNbExtraEvent(File originalFile)
+ {
- row++;
- }
- currentColumn+=2;
- }
+ int nbExtraEvent = 0;
- XLSUtil.saveAndClose( workbook );
+ {
+ File extraFile = getExtraXMLFile(originalFile);
+ if (extraFile.exists())
+ {
- } catch (IOException e) {
- e.printStackTrace();
- } catch (WriteException e) {
- e.printStackTrace();
- }
+ Document xmlDocument = XMLUtil.loadDocument(extraFile);
+ ArrayList<Element> labelElementList = XMLUtil.getElements(XMLUtil.getRootElement(xmlDocument),
+ "LABEL");
+ System.out.println("Number of extra user labels (XML): " + labelElementList.size());
+ nbExtraEvent += labelElementList.size();
+ }
+ }
- }
+ {
+ File extraFile = getExtraAviSoftTXTFile(originalFile);
+ if (extraFile.exists())
+ {
+ // nlabel type duration interval starttime endtime pstart_time pstart pstart_ampl pend_time pend pend_ampl pmin_time pmin pmin_ampl
+ // pmax_time pmax pmax_ampl
+
+ // Pattern pattern = Pattern.compile("(\t)(.*?)(\t)"); // finds string between tabs.
+ int nbElement = 0;
+
+ HashMap<String, Integer> eventFoundHashMap = new HashMap<String, Integer>();
+
+ try
+ {
+
+ Scanner scanner = new Scanner(extraFile);
+
+ while (scanner.hasNextLine())
+ {
+ int line = scanner.nextInt();
+ String labelName = scanner.next();
+
+ // if ( labelName == null ) continue;
- /**
- * check if a is overlapping b.
- * */
- private boolean isEventOverlapping(EventCriteria a, EventCriteria b) {
+ int nbLabelWithThisName = 0;
+ if (eventFoundHashMap.containsKey(labelName))
+ {
+ nbLabelWithThisName = eventFoundHashMap.get(labelName);
+ }
+ eventFoundHashMap.put(labelName, nbLabelWithThisName + 1);
+
+ scanner.nextLine();
+ }
- if ( b.startFrame <= a.endFrame && b.endFrame >= a.startFrame )
- {
- return true;
- }
+ for (String labelName : eventFoundHashMap.keySet())
+ {
+ System.out.println("Label Name : " + labelName + " #" + eventFoundHashMap.get(labelName));
+ }
- return false;
- }
+ nbElement += eventFoundHashMap.keySet().size();
-/** @deprecated
- *
- * @param vocEventIndex
- * @param candidateEventIndex
- * @param sheet
- */
- private void feedXLSWithIntersectingEvent( int vocEventIndex , int candidateEventIndex , WritableSheet sheet ) {
+ }
+ catch (FileNotFoundException e)
+ {
+ e.printStackTrace();
+ }
+ System.out.println("Number of extra user labels (AviSoft TXT): " + nbElement);
- /** Number of vocalization intersecting/overlapping with a contact */
+ nbExtraEvent += nbElement;
+ }
+ }
- EventTimeLine vocTimeLine = animal.eventTimeLineList.get( vocEventIndex );
- EventTimeLine candidateTimeLine = animal.eventTimeLineList.get( candidateEventIndex );
+ {
+ File extraFile = getExtraAviSoftXLSFile(originalFile);
+ if (extraFile.exists())
+ {
+ // nlabel type duration interval starttime
- int totalNbVoc = vocTimeLine.eventList.size();
+ // Pattern pattern = Pattern.compile("(\t)(.*?)(\t)"); // finds string between tabs.
+ int nbElement = 0;
+
+ HashMap<String, Integer> eventFoundHashMap = new HashMap<String, Integer>();
+
+ try
+ {
+
+ Workbook workbook = Workbook.getWorkbook(extraFile);
+
+ Sheet sheet = workbook.getSheet(0);
+ int nbRow = sheet.getRows();
+ System.out.println("Number of row in excel file: " + nbRow);
+
+ int row = 1;
+ while (row < nbRow)
+ {
+ String labelName = sheet.getCell(1, row).getContents();
+
+ int nbLabelWithThisName = 0;
+ if (eventFoundHashMap.containsKey(labelName))
+ {
+ nbLabelWithThisName = eventFoundHashMap.get(labelName);
+ }
+ eventFoundHashMap.put(labelName, nbLabelWithThisName + 1);
+
+ row++;
+ }
+
+ for (String labelName : eventFoundHashMap.keySet())
+ {
+ System.out.println("Label Name : " + labelName + " #" + eventFoundHashMap.get(labelName));
+ }
+
+ nbElement += eventFoundHashMap.keySet().size();
+
+ }
+ catch (FileNotFoundException e)
+ {
+ e.printStackTrace();
+ }
+ catch (BiffException e)
+ {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
+ catch (IOException e)
+ {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
+
+ System.out.println("Number of extra user labels (AviSoft XLS): " + nbElement);
+
+ nbExtraEvent += nbElement;
+ }
+ }
+
+ return nbExtraEvent;
+ }
+
+ private int loadExtraLabelAviSoftTXTFile(File originalFile, int currentY, Graphics2D g2)
+ {
+
+ File extraFile = getExtraAviSoftTXTFile(originalFile);
+ if (extraFile.exists())
+ {
+ // nlabel type duration interval starttime endtime pstart_time pstart pstart_ampl pend_time pend pend_ampl pmin_time pmin pmin_ampl pmax_time
+ // pmax pmax_ampl
+
+ // Pattern pattern = Pattern.compile("(\t)(.*?)(\t)"); // finds string between tabs.
+ int nbElement = 0;
+
+ HashMap<String, EventTimeLine> eventTimeLineHashMap = new HashMap<String, EventTimeLine>();
+ /*
+ * EventTimeLine userEvent = new EventTimeLine( userLabelName ,
+ * EventType.USER_EVENT , TimeLineCategory.USE_BOOLEAN_EVENT );
+ * animal.eventTimeLineList.add( userEvent );
+ */
+
+ try
+ {
+
+ loadDefaultUserEventSet(eventTimeLineHashMap, originalFile);
+
+ Scanner scanner = new Scanner(extraFile);
+
+ while (scanner.hasNextLine())
+ {
+ int lineNumber = scanner.nextInt(); // scan line number
+ System.out.println("next line number : " + lineNumber);
+
+ String labelName = scanner.next();
+
+ /*
+ * int nbLabelWithThisName = 0;
+ * if ( eventFoundHashMap.containsKey( labelName ) )
+ * {
+ * nbLabelWithThisName = eventFoundHashMap.get( labelName );
+ * }
+ * eventFoundHashMap.put( labelName , nbLabelWithThisName+1 );
+ */
+ // System.out.print( "label name: " + labelName + ":");
+ EventTimeLine userEvent = null;
+ // for ( String keyString : eventTimeLineHashMap.keySet() )
+ // {
+ // if ( keyString.equals( labelName ) )
+ // {
+ // userEvent = eventTimeLineHashMap.get( labelName );
+ // //System.out.print( ":found:");
+ // break;
+ // }
+ // }
+ if (eventTimeLineHashMap.containsKey(labelName)) // retreive EventTimeLine
+ {
+ userEvent = eventTimeLineHashMap.get(labelName);
+ }
+ else
+
+ // if (userEvent == null ) // means it was not found in keyset.
+ { // creates a new eventTimeLine for this label.
+ userEvent = new EventTimeLine(labelName, EventType.USER_EVENT,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ eventTimeLineHashMap.put(labelName, userEvent);
+ animal.eventTimeLineList.add(userEvent);
+ }
+
+ float duration = scanner.nextFloat();
+ float interval = scanner.nextFloat();
+ float startTime = scanner.nextFloat();
+
+ int durationInFrame = (int) (FPS * duration);
+ int startTimeInFrame = (int) (FPS * startTime);
+
+ // System.out.println( "line: " + line + " l:" + labelName + " s:" + startTime + " d:" + duration );
+
+ for (int t = startTimeInFrame; t <= startTimeInFrame + durationInFrame; t++)
+ {
+ userEvent.addPunctualEvent(t - firstFrame);
+ // System.out.print("a");
+ }
+ // System.out.println( "");
+ if (scanner.hasNextLine()) // flush what remains in this line.
+ {
+ scanner.nextLine();
+ }
+ }
+
+ scanner.close();
+
+ // display label found
+ ArrayList keys = new ArrayList(eventTimeLineHashMap.keySet());
+ Collections.sort(keys);
+ // for ( EventTimeLine eventTimeLine : eventTimeLineHashMap.values() )
+ // for ( Object key : keys )
+ for (int iTimeLine = 29; iTimeLine < animal.eventTimeLineList.size(); iTimeLine++)
+ {
+ // EventTimeLine eventTimeLine = eventTimeLineHashMap.get( key );
+ EventTimeLine eventTimeLine = animal.eventTimeLineList.get(iTimeLine);
+ // EventTimeLine eventTimeLine = eventTimeLineHashMap.get( eventTimeLineString );
+ System.out.println("Processing eventTimeLine... " + eventTimeLine.criteriaName + " nb event : "
+ + eventTimeLine.eventList.size());
+ nbElement++;
+
+ int nbEvent = 0;
+ int total = 0;
+ // draw result
+ g2.setColor(Color.BLUE);
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.BLACK);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = eventTimeLine.criteriaName + " nb event: " + nbEvent + " totalT: "
+ + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+
+ currentY += stepY;
+
+ imageComponent.stringList.add(string);
+
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+
+ }
+
+ }
+ catch (FileNotFoundException e)
+ {
+ e.printStackTrace();
+ }
+
+ System.out.println("Number of extra user labels (AviSoft): " + nbElement);
+
+ }
+
+ return currentY;
+
+ }
+
+ /**
+ * Loads a number of default user event set to force their presence in the list, and in a specific order.
+ * Then those events can be compared in the label analyser as they appear at the same line index event.
+ * (event 29 will be always the same)
+ * Loads the file in the folder call defaultUserEvents.txt
+ * Example of what it can contain:
+ * s
+ * f
+ * u
+ * d
+ * mo
+ * c
+ * j1
+ * j2
+ * mi
+ * n
+ * o
+ *
+ * @param eventTimeLineHashMap
+ * @param originalFile
+ */
+ private void loadDefaultUserEventSet(HashMap<String, EventTimeLine> eventTimeLineHashMap, File originalFile)
+ {
+
+ File defaultUserEventSetFile = new File(
+ FileUtil.getDirectory(originalFile.getAbsolutePath()) + "//defaultUserEvents.txt");
+
+ System.out.println("DefaultUserEventFile is: " + defaultUserEventSetFile.getAbsolutePath());
+
+ if (FileUtil.exists(defaultUserEventSetFile.getAbsolutePath()))
+ {
+ System.out.println("Loading default User events...");
+
+ try
+ {
+ Scanner scanner = new Scanner(defaultUserEventSetFile);
+
+ while (scanner.hasNextLine())
+ {
+ String labelName = scanner.nextLine();
+ System.out.println(labelName);
+ EventTimeLine userEvent = new EventTimeLine(labelName, EventType.USER_EVENT,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ eventTimeLineHashMap.put(labelName, userEvent);
+ animal.eventTimeLineList.add(userEvent);
+ }
+
+ scanner.close();
+
+ }
+ catch (FileNotFoundException e)
+ {
+ e.printStackTrace();
+ }
+
+ }
+
+ /*
+ * String labelName = "";
+ * EventTimeLine userEvent = new EventTimeLine( labelName ,
+ * EventType.USER_EVENT , TimeLineCategory.USE_BOOLEAN_EVENT );
+ * eventTimeLineHashMap.put( labelName, userEvent );
+ * animal.eventTimeLineList.add( userEvent );
+ */
+
+ }
+
+ private int loadExtraLabelXMLFile(File originalFile, int currentY, Graphics2D g2)
+ {
+
+ // load labels generated by user ( file extra.xml )
+ File extraFile = getExtraXMLFile(originalFile);
+
+ System.out.println("XML file is: " + file.getAbsolutePath());
+ System.out.println("Extra XML file is: " + extraFile.getAbsolutePath());
+
+ if (!extraFile.exists())
+ return currentY;
+
+ System.out.println("The extra info file exists... Processing...");
+
+ Document xmlDocument = XMLUtil.loadDocument(extraFile);
+
+ /** offset to shit in time the incoming labels, in order to sync them if needed. */
+ int offset = 0;
+
+ ArrayList<Element> labelElementListOffset = XMLUtil.getElements(XMLUtil.getRootElement(xmlDocument),
+ "OFFSET");
+ for (Element labelElement : labelElementListOffset)
+ {
+ offset = XMLUtil.getAttributeIntValue(labelElement, "offset", 0);
+ }
+
+ /** min duration event */
+ int minDurationEvent = 0;
+
+ ArrayList<Element> labelElementListMinDuration = XMLUtil.getElements(XMLUtil.getRootElement(xmlDocument),
+ "MINDURATION");
+ for (Element labelElement : labelElementListMinDuration)
+ {
+ minDurationEvent = XMLUtil.getAttributeIntValue(labelElement, "minduration", 0);
+ }
+
+ ArrayList<Element> labelElementList = XMLUtil.getElements(XMLUtil.getRootElement(xmlDocument), "LABEL");
+
+ for (Element labelElement : labelElementList)
+ {
+
+ String userLabelName = XMLUtil.getAttributeValue(labelElement, "name", "no name");
+ String userLabelColorString = XMLUtil.getAttributeValue(labelElement, "color", "green");
+
+ System.out.println("Loading label " + userLabelName);
+
+ Color userEventColor = null;
+ try
+ {
+ Field field = Class.forName("java.awt.Color").getField(userLabelColorString);
+ userEventColor = (Color) field.get(null);
+ }
+ catch (Exception e)
+ {
+ userEventColor = Color.green; // Not defined
+ System.err.println("Unsupported color in label " + userLabelName + " (switching to green)");
+ }
+
+ // create node
+
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine userEvent = new EventTimeLine(userLabelName, EventType.USER_EVENT,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(userEvent);
+
+ synchronizeAllAnimalEvent(userEvent);
+
+ g2.setColor(userEventColor);
+
+ // read events.
+ ArrayList<Element> labelEventList = XMLUtil.getElements(labelElement, "EVENT");
+
+ for (Element labelEvent : labelEventList)
+ {
+ int start = XMLUtil.getAttributeIntValue(labelEvent, "start", -1);
+ int end = XMLUtil.getAttributeIntValue(labelEvent, "end", -1);
- int nbVocWithEvent = getNumberOfEventOverlap( vocTimeLine , candidateTimeLine );
+ if (start == -1)
+ {
+ System.err.println("Error in label " + userLabelName);
+ System.err.println("Wrong start value (skipping event)");
+ continue;
+ }
- int row = sheet.getRows();
+ if (end == -1)
+ {
+ System.err.println("Error in label " + userLabelName);
+ System.err.println("Wrong end value (skipping event)");
+ continue;
+ }
- XLSUtil.setCellString(sheet, 0 , row, "nb Voc with event :"+candidateTimeLine.criteriaName );
- XLSUtil.setCellNumber(sheet, 1 , row, nbVocWithEvent );
- XLSUtil.setCellString(sheet, 2 , row, "percent:" );
- XLSUtil.setCellNumber(sheet, 3 , row++, nbVocWithEvent * 100f / totalNbVoc );
+ if (start > end)
+ {
+ System.err.println("Error in label " + userLabelName);
+ System.err.println("start value > end value (skipping event)");
+ continue;
+ }
+ start += offset;
+ end += offset;
- }
+ // check minduration event: if the event is smaller than mindurationevent, create an event of the correct length from start.
- /** @deprected
- * provides the number of event vocTimeLine overlapping with the candidate time line */
- private int getNumberOfEventOverlap(EventTimeLine vocTimeLine,
- EventTimeLine candidateTimeLine) {
+ if (end - start < minDurationEvent)
+ {
+ end = start + minDurationEvent;
+ }
- int nbEvent = 0;
+ for (int t = start; t <= end; t++)
+ {
+ userEvent.addPunctualEvent(t - firstFrame);
+ }
+ }
- System.out.println("nb of event of type ** " + vocTimeLine.criteriaName + " ** matching ** " + candidateTimeLine.criteriaName + " **" );
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : userEvent.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
- for ( EventCriteria vocEvent : vocTimeLine.eventList )
- {
- for ( EventCriteria candidateEvent : animal.eventTimeLineList.get( 1 ).eventList )
- {
- if ( isEventOverlapping( vocEvent , candidateEvent ) )
- {
- nbEvent++;
- break;
- }
- }
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = userLabelName + nbEvent + " totalT: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
- }
+ currentY += stepY;
- return nbEvent;
- }
+ imageComponent.stringList.add(string);
- private void computeEventLocationHeatMap()
- {
- // red channel : contact events
- // green channel : usv events
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ }
- // check if event is found
+ System.out.println("Custom XML user label loaded.");
+
+ return currentY;
+ }
+
+ /**
+ * This function ensure that all the events are loaded the same way for all animals,
+ * and even resort them, in order to have the exact same list (and same order) of event for all animals
+ *
+ * @param userEvent
+ */
+ private void synchronizeAllAnimalEvent(EventTimeLine userEvent)
+ {
- //System.out.println( animal.eventTimeLineList.get( 29 ).criteriaName );
+ // TODO
- // create image
+ ArrayList<Animal> animalList = new ArrayList<Animal>();
+ for (VideoLabelPanel videoLabelPanel : videoLabelPanelArrayList)
+ {
+ animalList.add(videoLabelPanel.animal);
+ }
- // should parse the all data to find min/max or check video input size.
+ }
- SCALE = Float.parseFloat( scaleTextField.getText() );
+ float getMin(float a, float b)
+ {
+ if (a < b)
+ return a;
+ return b;
+ }
+
+ public void loadXML(File currentFile)
+ {
+
+ System.out.println("Loading document");
+
+ // LOAD DOCUMENT
+
+ mouseARecord.clear();
+ mouseBRecord.clear();
+
+ File XMLFile = currentFile;
+ if (!XMLFile.exists())
+ return;
+
+ Document XMLDocument = XMLUtil.loadDocument(XMLFile);
+
+ XPath xpath = XPathFactory.newInstance().newXPath();
+
+ // VIDEO FILE NAME LOAD
+
+ {
+ String expression = "//FILENAME";
+ NodeList nodes;
+ try
+ {
+ nodes = (NodeList) xpath.evaluate(expression, XMLDocument, XPathConstants.NODESET);
- IcyBufferedImage image = new IcyBufferedImage( 800 , 600 , 3, DataType.USHORT );
+ // System.out.println( "node size : " + nodes.getLength() );
- // check < threshold 1 events
- for ( EventCriteria event : animal.eventTimeLineList.get( 0 ).eventList )
- {
- for ( int t = event.startFrame ; t <= event.endFrame; t++ )
- {
- MouseInfoRecord mouseA = mouseARecord.get( t );
- additiveDrawMouse( mouseA , image , 0 );
+ Element fileNode = (Element) nodes.item(0);
+ System.out.println("Video file is :" + fileNode.getTextContent());
+ videoFile = new File(fileNode.getTextContent());
- MouseInfoRecord mouseB = mouseBRecord.get( t );
- additiveDrawMouse( mouseB , image , 0 );
- }
- }
+ }
+ catch (XPathExpressionException e)
+ {
- // check USV
- for ( EventCriteria event : animal.eventTimeLineList.get( 29 ).eventList )
- {
- for ( int t = event.startFrame ; t <= event.endFrame; t++ )
- {
- MouseInfoRecord mouseA = mouseARecord.get( t );
- additiveDrawMouse( mouseA , image , 1 );
+ e.printStackTrace();
+ }
+ }
- MouseInfoRecord mouseB = mouseBRecord.get( t );
- additiveDrawMouse( mouseB , image , 1 );
- }
- }
+ // MOUSE A LOAD
- image.dataChanged();
+ // float startFrame = Float.parseFloat( loadFrameStartTextField.getText() );
+ // float endFrame = Float.parseFloat( loadFrameEndTextField.getText() );
- // display image
+ float startFrame = 0;
+ float endFrame = Float.MAX_VALUE;
- Sequence outPutSequence = new Sequence( image );
- // Icy.getMainInterface().addSequence( outPutSequence );
+ {
- // save Image
+ String expression = "//MOUSEA/DET";
+ NodeList nodes;
+ try
+ {
+ nodes = (NodeList) xpath.evaluate(expression, XMLDocument, XPathConstants.NODESET);
- File heatMapFile = new File ( FileUtil.setExtension( file.getAbsolutePath() , ".heatmap.event.tif" ) );
- Saver.save( outPutSequence , heatMapFile );
- new AnnounceFrame( "HeatMapFile saved to " + heatMapFile.getAbsolutePath() , 5 );
+ // System.out.println( "mouse A node size : " + nodes.getLength() );
- }
+ for (int i = 0; i < nodes.getLength(); i++)
+ {
+ Element detNode = (Element) nodes.item(i);
- private void computeLocationHeatMap() {
+ MouseInfoRecord mouseInfoRecord = new MouseInfoRecord();
+ mouseInfoRecord.bodyPosition = new Point2D.Float(
+ Float.parseFloat(detNode.getAttribute("bodyx")),
+ Float.parseFloat(detNode.getAttribute("bodyy")));
+ mouseInfoRecord.headPosition = new Point2D.Float(
+ Float.parseFloat(detNode.getAttribute("headx")),
+ Float.parseFloat(detNode.getAttribute("heady")));
+ mouseInfoRecord.tailPosition = new Point2D.Float(
+ Float.parseFloat(detNode.getAttribute("tailx")),
+ Float.parseFloat(detNode.getAttribute("taily")));
- // create image
+ int currentT = Integer.parseInt(detNode.getAttribute("t"));
+ if (currentT >= startFrame && currentT <= endFrame)
+ {
+ // System.out.println("Mouse A adding record at t " + currentT );
+ mouseARecord.put(currentT, mouseInfoRecord);
+ }
- // should parse the all data to find min/max or check video input size.
+ }
- SCALE = Float.parseFloat( scaleTextField.getText() );
+ }
+ catch (XPathExpressionException e)
+ {
+
+ e.printStackTrace();
+ }
+ }
- IcyBufferedImage image = new IcyBufferedImage( 800 , 600 , 4, DataType.USHORT );
+ // MOUSE B LOAD
+
+ {
+ String expression = "//MOUSEB/DET";
+ NodeList nodes;
+ try
+ {
+ nodes = (NodeList) xpath.evaluate(expression, XMLDocument, XPathConstants.NODESET);
+ // System.out.println( "mouse B node size : " + nodes.getLength() );
+ for (int i = 0; i < nodes.getLength(); i++)
+ {
+ Element detNode = (Element) nodes.item(i);
+
+ MouseInfoRecord mouseInfoRecord = new MouseInfoRecord();
+ mouseInfoRecord.bodyPosition = new Point2D.Float(
+ Float.parseFloat(detNode.getAttribute("bodyx")),
+ Float.parseFloat(detNode.getAttribute("bodyy")));
+ mouseInfoRecord.headPosition = new Point2D.Float(
+ Float.parseFloat(detNode.getAttribute("headx")),
+ Float.parseFloat(detNode.getAttribute("heady")));
+ mouseInfoRecord.tailPosition = new Point2D.Float(
+ Float.parseFloat(detNode.getAttribute("tailx")),
+ Float.parseFloat(detNode.getAttribute("taily")));
+
+ int currentT = Integer.parseInt(detNode.getAttribute("t"));
+ if (currentT >= startFrame && currentT <= endFrame)
+ {
+
+ // System.out.println("Mouse B adding record at t " + currentT );
+
+ mouseBRecord.put(currentT, mouseInfoRecord);
+ }
+
+ }
+
+ }
+ catch (XPathExpressionException e)
+ {
+
+ e.printStackTrace();
+ }
+ }
+
+ startOffset = trimAnalysisRecord();
+
+ }
+
+ /** Time in frame before the first analysis. Used to offset the video sequence. **/
+ int startOffset = 0;
+
+ double only2digit(double val)
+ {
+ val *= 100;
+ val = Math.floor(val);
+ val /= 100f;
+ return val;
+ }
+
+ void computeVisionGraph(VisionGraph visionGraph)
+ {
+ // --------------------------------
+ // A regarde l'autre souris ( non event / graph de vue )
+ {
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+
+ int tabAngle[] = new int[361];
+ int graphNumber = 0;
+
+ int binSize = 5;
+
+ EventCriteria currentCriteria = null;
+
+ int tMin = Integer.MAX_VALUE;
+ int tMax = 0;
+ {
+ Iterator<Integer> integerIterator = mouseARecord.keySet().iterator();
+ while (integerIterator.hasNext())
+ {
+ int val = integerIterator.next();
+ if (val > tMax)
+ tMax = val;
+ if (val < tMin)
+ tMin = val;
+ }
+ }
- // render mice
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
- // mouse A
- for ( Integer t : mouseARecord.keySet() )
- {
- MouseInfoRecord mouseA = mouseARecord.get( t );
- additiveDrawMouse( mouseA , image , 0 );
- }
+ double distanceHeadABodyB = mouseA.headPosition.distanceSq(mouseB.bodyPosition);
+ double distanceHeadAHeadB = mouseA.headPosition.distanceSq(mouseB.headPosition);
+ double distanceBodyABodyB = mouseA.bodyPosition.distanceSq(mouseB.bodyPosition);
+ double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq(mouseB.headPosition);
+
+ double VAx = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
+ double VAy = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
+ double angleA = Math.atan2(VAy, VAx);
- // mouse B
- for ( Integer t : mouseBRecord.keySet() )
- {
- MouseInfoRecord mouseB = mouseBRecord.get( t );
- additiveDrawMouse( mouseB , image , 1 );
- }
+ // teste A dans la vue.
- // voc event on blue channel. (test purposes)
- for ( Integer t : mouseBRecord.keySet() )
- {
- MouseInfoRecord mouseB = mouseBRecord.get( t );
- MouseInfoRecord mouseA = mouseARecord.get( t );
+ double VABx = -mouseA.headPosition.getX() + mouseB.headPosition.getX();
+ double VABy = -mouseA.headPosition.getY() + mouseB.headPosition.getY();
+ double angleBA = Math.atan2(VABy, VABx); // + Math.PI;
- EventTimeLine eventTimeLineWatched = animal.eventTimeLineList.get( 29 );
- if ( eventTimeLineWatched.getNbEvent( t , t ) == 1 )
- {
- additiveDrawMouse( mouseA , image , 2 );
- additiveDrawMouse( mouseB , image , 3 );
- }
- }
+ boolean eventIsOk = true;
+
+ if (angleMin(angleBA, angleA) < demiVisionDeSouris)
+ {
- image.dataChanged();
+ }
+ else
+ {
+ eventIsOk = false;
+ }
- // display image
+ if (visionGraph == VisionGraph.AT_FOLLOW_STATE)
+ {
+ // CRITERE EN POURSUITE
+ if (
- Sequence outPutSequence = new Sequence( image );
-// Icy.getMainInterface().addSequence( outPutSequence );
+ (mouseA.distanceIsInferiorToThreshold2) || (!mouseA.isGettingToOtherAndTouch))
+ {
+ eventIsOk = false;
+ }
+ }
- // save Image
+ if (visionGraph == VisionGraph.AT_STOP_STATE)
+ {
+ if (
+ // CRITERE EN OBSERVATION A L ARRET
+
+ (mouseA.distanceIsInferiorToThreshold1) || (mouseA.speed > SPEED_THRESHOLD_1))
+
+ {
+ eventIsOk = false;
+ }
+ }
+
+ if (eventIsOk)
+ {
+
+ double angleSouris = angleA;
+ double angleVision = angleBA;
+
+ angleVision = angleVision - angleSouris;
+
+ int angleVisionDeg = (int) (180d * angleVision / Math.PI);
- File heatMapFile = new File ( FileUtil.setExtension( file.getAbsolutePath() , ".heatmap.tif" ) );
- Saver.save( outPutSequence , heatMapFile );
- new AnnounceFrame( "HeatMapFile saved to " + heatMapFile.getAbsolutePath() , 5 );
+ while (angleVisionDeg > 180)
+ angleVisionDeg -= 360;
+ while (angleVisionDeg < -180)
+ angleVisionDeg += 360;
+
+ int angleToFill = binSize * ((int) angleVisionDeg / binSize);
- }
+ tabAngle[180 + angleToFill]++;
+ }
+ }
+ }
- private void additiveDrawMouse(MouseInfoRecord mouse , IcyBufferedImage image , int channel ) {
+ // Graph de placement de I dans la vue de R.
+ {
- Ellipse2D head = new Ellipse2D.Float( (float)mouse.headPosition.getX()-(40f*SCALE)/2f , (float)mouse.headPosition.getY() - (40f*SCALE)/2f , 40*SCALE , 40*SCALE ); //9
- Ellipse2D body = new Ellipse2D.Float( (float)mouse.bodyPosition.getX()-(77f*SCALE)/2f , (float)mouse.bodyPosition.getY() - (77f*SCALE)/2f , 77*SCALE , 77*SCALE ); // 17
- Ellipse2D tail = new Ellipse2D.Float( (float)mouse.tailPosition.getX()-(13f*SCALE)/2f , (float)mouse.tailPosition.getY() - (13f*SCALE)/2f , 13*SCALE , 13*SCALE ); // 3
+ XlsManager xls = null;
+ File xlsFile = new File(System.getProperty("user.home") + "\\" + visionGraph.toString() + " "
+ + animal.animalName + ".xls");
+ try
+ {
+ xls = new XlsManager(xlsFile);
+ }
+ catch (IOException e)
+ {
- int centerX =0;
- int centerY =0;
- int ray= 30;
- additiveDrawOverImage( image , (int)head.getCenterX(), (int)head.getCenterY(), (int)((40f*SCALE)/2f) , channel );
- additiveDrawOverImage( image , (int)body.getCenterX(), (int)body.getCenterY(), (int)((77f*SCALE)/2f) , channel );
- additiveDrawOverImage( image , (int)tail.getCenterX(), (int)tail.getCenterY(), (int)((13f*SCALE)/2f) , channel );
+ e.printStackTrace();
+ }
- }
+ xls.createNewPage("result");
- private void additiveDrawOverImage(IcyBufferedImage image, int ox,
- int oy, int r , int channel ) {
+ // Generation du graph de vue de la residente.
+
+ JFreeChart chart;
+ XYSeriesCollection xyDataset = new XYSeriesCollection();
+ YIntervalSeriesCollection yintervalseriescollection = new YIntervalSeriesCollection();
+ IcyFrame graphFrame = new IcyFrame("graph " + graphNumber + " " + animal.animalName, true, true,
+ true, true);
+ graphNumber++;
- short[] buffer = image.getDataXYAsShort( channel );
- int width = image.getWidth();
+ chart = ChartFactory.createXYLineChart("", "angle", "y", xyDataset, PlotOrientation.VERTICAL, true,
+ false, false);
- for (int x = -r; x < r ; x++)
- {
- int height = (int)Math.sqrt(r * r - x * x);
+ XYSeries seriesXY = new XYSeries("Sight " + animal.animalName);
+ xyDataset.addSeries(seriesXY);
- for (int y = -height; y < height; y++){
- //bmp.SetPixel(x + ox, y + oy, Color.Red);
- buffer[ (oy+y)*width + x+ox ]++;
- }
- }
+ int cursorX = 0;
- }
+ for (int i = 0; i < 360; i += binSize)
+ {
+ seriesXY.add(i - 180, tabAngle[i]);
+ xls.setNumber(cursorX, 0, tabAngle[i]);
+ cursorX++;
+ }
- private void exportSpeed(XlsManager xls,
- HashMap<Integer, MouseInfoRecord> mouseRecord , String name) {
+ new AnnounceFrame("Exported in file " + xlsFile);
+ xls.SaveAndClose();
+
+ graphFrame.getContentPane().add(
+ new ChartPanel(chart, 500, 200, 500, 200, 500, 500, false, false, true, true, true, true));
+ graphFrame.setVisible(true);
+ graphFrame.pack();
+ graphFrame.addToMainDesktopPane();
+ graphFrame.center();
- xls.createNewPage( name );
+ }
- int tMin = 0;
+ }
+ }
- START_MINUTE = Integer.parseInt( computeImageStartMinuteTextField.getText() );
- NB_MINUTE = Integer.parseInt( computeImageNbMinuteTextField.getText() );
- firstFrame = (int) (tMin + START_MINUTE * 60* FPS);
- lastFrame = (int) (firstFrame+NB_MINUTE*60*FPS);
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
- int tMax = lastFrame;
- /** frameWindow est utilisé pour lisser le calcul de deplacement entre deux points de temps. t-framewindow et t+frameWindow */
- int frameWindow = 6; // 5
+ if (e.getSource() == computeVisionInFollowButton)
+ {
+ computeVisionGraph(VisionGraph.AT_FOLLOW_STATE);
+ }
+ if (e.getSource() == computeVisionWhenStoppedButton)
+ {
+ computeVisionGraph(VisionGraph.AT_STOP_STATE);
+ }
- double speedFrame[] = new double[tMax-firstFrame]; // speed computed at each frame
+ if (e.getSource() == exportSpeedButton)
+ {
+ // export speed computation
- xls.setLabel( 0 , 0 , "frame#" );
- xls.setLabel( 1 , 0 , "speed in px/frame time" );
- xls.setLabel( 2 , 0 , "cumulated distance in px" );
+ File xlsFile = new File(file.getAbsolutePath() + ".speed.xls");
- {
- float nbVal = 0;
- double totalDistance = 0;
- for ( int t = 0 ; t < tMax ; t++ )
- {
- if ( mouseRecord.containsKey( t - frameWindow ) )
- if ( mouseRecord.containsKey( t + frameWindow ) )
- if ( mouseRecord.containsKey( t ) )
- {
- MouseInfoRecord mouseRecordPrev = mouseRecord.get( t-frameWindow );
- MouseInfoRecord mouseRecordNext = mouseRecord.get( t+frameWindow );
- MouseInfoRecord mouseRecordCurrentFrame = mouseRecord.get( t );
+ try
+ {
+ XlsManager xls = new XlsManager(xlsFile);
+ // xls.createNewPage("Results");
- float distance = (float)mouseRecordPrev.bodyPosition.distance( mouseRecordNext.bodyPosition );
- distance /= (float)(frameWindow *2 +1 ); // pour obtenir une vitesse par frame.
+ exportSpeed(xls, mouseARecord, "Mouse A");
+ exportSpeed(xls, mouseBRecord, "Mouse B");
+ xls.SaveAndClose();
- totalDistance+=distance;
+ }
+ catch (IOException e1)
+ {
+ e1.printStackTrace();
+ }
+
+ new AnnounceFrame("Speed data have been exported to " + xlsFile.getAbsolutePath(), 5);
+
+ }
+
+ if (e.getSource() == computeLocationHeatMapButton)
+ {
+ computeLocationHeatMap();
+ // computeEventLocationHeatMap();
+ }
+
+ if (e.getSource() == computeUSVStat)
+ {
+ // computeVocStats();
+ computeUSVStats();
+ }
+
+ if (e.getSource() == exportEventsAsXML)
+ {
+ exportEventsAsXML();
+ }
+
+ if (e.getSource() == saveImageButton)
+ {
+ // save a full strip of the image
+ try
+ {
+ ImageIO.write(imageChrono, "png", new File(file.getAbsolutePath() + ".1.png"));
+ }
+ catch (IOException e1)
+ {
+ e1.printStackTrace();
+ }
+
+ // save criteria by criteria
+
+ int numeroCriteria = 0;
+ for (int y = 0; y < imageChrono.getHeight(); y += stepY)
+ {
+
+ BufferedImage image2 = new BufferedImage(imageChrono.getWidth(), stepY, BufferedImage.TYPE_INT_BGR);
+
+ Graphics2D targetG = (Graphics2D) image2.getGraphics();
+
+ targetG.drawImage(imageChrono, null, 0, -y);
+
+ try
+ {
+ ImageIO.write(image2, "png",
+ new File(file.getAbsolutePath() + ".criteria_" + numeroCriteria + ".png"));
+ }
+ catch (IOException e1)
+ {
+ e1.printStackTrace();
+ }
+ numeroCriteria++;
+
+ }
+
+ // save the strip with multiple lines.
+
+ float desiredWidth = 1600 * 2;
+
+ BufferedImage image2 = new BufferedImage((int) desiredWidth,
+ (int) (imageChrono.getHeight() * imageChrono.getWidth() / desiredWidth),
+ BufferedImage.TYPE_INT_BGR);
+
+ Graphics2D sourceG = (Graphics2D) imageChrono.getGraphics();
+ Graphics2D targetG = (Graphics2D) image2.getGraphics();
+
+ int stepY = 0;
+ for (int offset = 0; offset < imageChrono.getWidth(); offset += desiredWidth)
+ {
+ targetG.drawImage(imageChrono, null, -offset, stepY * imageChrono.getHeight());
+ stepY++;
+ }
+
+ try
+ {
+ ImageIO.write(image2, "png", new File(file.getAbsolutePath() + ".2.png"));
+ }
+ catch (IOException e1)
+ {
+ e1.printStackTrace();
+ }
+
+ }
+
+ }
+
+ private void exportEventsAsXML()
+ {
+
+ Document document = XMLUtil.createDocument(true);
+
+ for (EventTimeLine eventTimeLine : animal.eventTimeLineList)
+ {
+ Element elementTimeLine = document.createElement("EventTimeLine");
+ document.getDocumentElement().appendChild(elementTimeLine);
+ XMLUtil.setAttributeIntValue(elementTimeLine, "index", animal.eventTimeLineList.indexOf(eventTimeLine));
+ XMLUtil.setAttributeValue(elementTimeLine, "name", eventTimeLine.criteriaName);
+ XMLUtil.setAttributeValue(elementTimeLine, "type", eventTimeLine.eventType.toString());
+ XMLUtil.setAttributeValue(elementTimeLine, "timeLineCategory",
+ eventTimeLine.timeLineCategory.toString());
+
+ for (EventCriteria event : eventTimeLine.eventList)
+ {
+ Element elementEvent = document.createElement("event");
+ elementTimeLine.appendChild(elementEvent);
+ XMLUtil.setAttributeIntValue(elementEvent, "startFrame", event.startFrame);
+ XMLUtil.setAttributeIntValue(elementEvent, "endFrame", event.endFrame);
+ }
+ }
+
+ File xmlFile = new File(file.getAbsolutePath() + ".allEventsExported.xml");
+ XMLUtil.saveDocument(document, xmlFile);
+ AnnounceFrame f = new AnnounceFrame("File exported: " + xmlFile.getAbsolutePath());
+ }
+
+ private void computeUSVStats()
+ {
+
+ // designed for USVs
+ // given an event, let's say an USV event, this code provide the following ratio:
+ // The number of USV event that are correlated with the events of a specific timeEvent.
+ // 100% means all the USV event are overlapping with the candidate event.
+ // 50% means half the USV event are ...
+
+ WritableWorkbook workbook;
+
+ try
+ {
+
+ workbook = XLSUtil.createWorkbook(new File(file.getAbsolutePath() + ".event.xls"));
+ WritableSheet page = XLSUtil.createNewPage(workbook, "result");
+
+ int currentColumn = 1;
+ for (int indexOfUSVEvent = 29; indexOfUSVEvent < animal.eventTimeLineList.size(); indexOfUSVEvent++)
+ {
- mouseRecordCurrentFrame.speed = distance;
+ EventTimeLine eventTimeLineWatched = animal.eventTimeLineList.get(indexOfUSVEvent);
- speedFrame[ t -firstFrame ] = distance;
- xls.setNumber( 0, (int)(nbVal+1), nbVal );
- xls.setNumber( 1, (int)(nbVal+1), distance );
- xls.setNumber( 2, (int)(nbVal+1), totalDistance );
+ XLSUtil.setCellString(page, 0, 0, file.getAbsolutePath());
+ // XLSUtil.setCellString( page, 0, 1, "event watched: " + eventTimeLineWatched.criteriaName );
+ // XLSUtil.setCellString( page, 0, 2, "nb event(s): " + eventTimeLineWatched.eventList.size() );
+
+ int row = 5;
+
+ XLSUtil.setCellString(page, 0, row, "event");
+ XLSUtil.setCellString(page, currentColumn, row - 2, "Event: " + eventTimeLineWatched.criteriaName);
+ XLSUtil.setCellString(page, currentColumn, row - 1,
+ "Nb event: " + eventTimeLineWatched.eventList.size());
+
+ XLSUtil.setCellString(page, currentColumn, row, "nb corr event ");
+ XLSUtil.setCellString(page, currentColumn + 1, row, "% corr event");
+ // 1
+ // 1
+ // 2
+ row += 2;
+
+ for (EventTimeLine eventTimeLineCandidate : animal.eventTimeLineList)
+ {
+ XLSUtil.setCellString(page, 0, row, eventTimeLineCandidate.criteriaName);
+
+ int nbEventCandidate = eventTimeLineCandidate.eventList.size();
+ // XLSUtil.setCellNumber( page, currentColumn, row, nbEventCandidate );
+
+ int nbOccur = 0;
+
+ // check how many time the eventUSV occurs at the same time as the candidateEvent
+ for (EventCriteria eventUSV : eventTimeLineWatched.eventList)
+ {
+
+ for (EventCriteria eventCandidate : eventTimeLineCandidate.eventList)
+ {
+ if (isEventOverlapping(eventUSV, eventCandidate))
+ {
+ nbOccur++;
+ break;
+ }
+
+ }
+
+ }
- nbVal++;
- }
- }
+ float ratio = 100f * (float) nbOccur / (float) eventTimeLineWatched.eventList.size();
+ XLSUtil.setCellNumber(page, currentColumn, row, nbOccur);
+ XLSUtil.setCellNumber(page, currentColumn + 1, row, ratio);
+ row++;
+ }
+ currentColumn += 2;
+ }
- }
+ XLSUtil.saveAndClose(workbook);
- xls.setLabel( 4 , 0 , "second#" );
- xls.setLabel( 5 , 0 , "speed in px/s" );
- xls.setLabel( 6 , 0 , "cumulated distance in px" );
+ }
+ catch (IOException e)
+ {
+ e.printStackTrace();
+ }
+ catch (WriteException e)
+ {
+ e.printStackTrace();
+ }
- //System.out.println("tMax : " + tMax );
- {
- int sec = 0;
- int arrayCounter = 0;
- double totalDistance = 0;
- while ( arrayCounter < tMax - FPS )
- {
+ }
- double speedSec = 0;
+ /**
+ * check if a is overlapping b.
+ */
+ private boolean isEventOverlapping(EventCriteria a, EventCriteria b)
+ {
- for ( int i = 0 ; i< FPS ; i++ )
- {
- speedSec+= speedFrame[arrayCounter];
- totalDistance+= speedFrame[arrayCounter];
- arrayCounter++;
- }
+ if (b.startFrame <= a.endFrame && b.endFrame >= a.startFrame)
+ {
+ return true;
+ }
- //speedSec;
+ return false;
+ }
- System.out.println("sec:" + sec );
+ /**
+ * @deprecated
+ * @param vocEventIndex
+ * @param candidateEventIndex
+ * @param sheet
+ */
+ private void feedXLSWithIntersectingEvent(int vocEventIndex, int candidateEventIndex, WritableSheet sheet)
+ {
- xls.setNumber( 4 , sec+1 , sec );
- xls.setNumber( 5 , sec+1 , speedSec );
- xls.setNumber( 6 , sec+1 , totalDistance );
+ /** Number of vocalization intersecting/overlapping with a contact */
- sec++;
- }
+ EventTimeLine vocTimeLine = animal.eventTimeLineList.get(vocEventIndex);
+ EventTimeLine candidateTimeLine = animal.eventTimeLineList.get(candidateEventIndex);
- }
- }
+ int totalNbVoc = vocTimeLine.eventList.size();
- @Override
- public void mouseClicked(MouseEvent e) {
- updateVideoImageAt( e.getX() );
- }
+ int nbVocWithEvent = getNumberOfEventOverlap(vocTimeLine, candidateTimeLine);
- @Override
- public void mouseEntered(MouseEvent e) {
- }
+ int row = sheet.getRows();
- @Override
- public void mouseExited(MouseEvent e) {
- }
+ XLSUtil.setCellString(sheet, 0, row, "nb Voc with event :" + candidateTimeLine.criteriaName);
+ XLSUtil.setCellNumber(sheet, 1, row, nbVocWithEvent);
+ XLSUtil.setCellString(sheet, 2, row, "percent:");
+ XLSUtil.setCellNumber(sheet, 3, row++, nbVocWithEvent * 100f / totalNbVoc);
- @Override
- public void mousePressed(MouseEvent e) {
- }
-
- @Override
- public void mouseReleased(MouseEvent e) {
- }
-
- @Override
- public void mouseDragged(MouseEvent e) {
- //System.out.println(startOffset);
- updateVideoImageAt( e.getX() );
-
- }
-
- private void updateVideoImageAt(int x) {
-
- x = x+ firstFrame;
- //x = x+ startOffset;
-
- if ( frameAccess == null )
- {
- // check if file exists.
- if ( videoFile.exists() )
- {
- frameAccess = new FrameAccess( videoFile );
- }else
- {
- System.out.println("File specified in XML is not present. Checking in XML folder.");
- videoFile = new File ( FileUtil.getDirectory( file.getAbsolutePath() ) + FileUtil.separator + FileUtil.getFileName( videoFile.getName() ) );
- frameAccess = new FrameAccess( videoFile );
- }
+ }
+ /**
+ * @deprected
+ * provides the number of event vocTimeLine overlapping with the candidate time line
+ */
+ private int getNumberOfEventOverlap(EventTimeLine vocTimeLine, EventTimeLine candidateTimeLine)
+ {
- }
+ int nbEvent = 0;
+ System.out.println("nb of event of type ** " + vocTimeLine.criteriaName + " ** matching ** "
+ + candidateTimeLine.criteriaName + " **");
- videoImage = frameAccess.getImageAt( x + startOffset+3 );
+ for (EventCriteria vocEvent : vocTimeLine.eventList)
+ {
+ for (EventCriteria candidateEvent : animal.eventTimeLineList.get(1).eventList)
+ {
+ if (isEventOverlapping(vocEvent, candidateEvent))
+ {
+ nbEvent++;
+ break;
+ }
+ }
- if ( videoImage == null )
- {
- videoImage = IcyBufferedImageUtil.toBufferedImage( new IcyBufferedImage( 640, 480, 1, DataType.BYTE ), null );
+ }
- }
+ return nbEvent;
+ }
- // draw over.
+ private void computeEventLocationHeatMap()
+ {
+ // red channel : contact events
+ // green channel : usv events
- Graphics2D g2 = (Graphics2D) videoImage.getGraphics();
+ // check if event is found
- // Mouse A
- {
- g2.setColor( Color.red );
- MouseInfoRecord mouseA = mouseARecord.get( x );
- MouseInfoRecord mouseB = mouseBRecord.get( x );
- if ( mouseA != null )
- {
- SCALE = Float.parseFloat( scaleTextField.getText() );
-// Ellipse2D head = new Ellipse2D.Float( (float)mouseA.headPosition.getX()-4f , (float)mouseA.headPosition.getY() - (40f*SCALE)/2f , 40*SCALE , 40*SCALE ); //9
-// Ellipse2D body = new Ellipse2D.Float( (float)mouseA.bodyPosition.getX()-8f , (float)mouseA.bodyPosition.getY() - (77f*SCALE)/2f , 77*SCALE , 77*SCALE ); // 17
-// Ellipse2D tail = new Ellipse2D.Float( (float)mouseA.tailPosition.getX()-1f , (float)mouseA.tailPosition.getY() - (13f*SCALE)/2f , 13*SCALE , 13*SCALE ); // 3
-//System.out.println(SCALE);
- Ellipse2D head = new Ellipse2D.Float( (float)mouseA.headPosition.getX()-(40f*SCALE)/2f , (float)mouseA.headPosition.getY() - (40f*SCALE)/2f , 40*SCALE , 40*SCALE ); //9
- Ellipse2D body = new Ellipse2D.Float( (float)mouseA.bodyPosition.getX()-(77f*SCALE)/2f , (float)mouseA.bodyPosition.getY() - (77f*SCALE)/2f , 77*SCALE , 77*SCALE ); // 17
- Ellipse2D tail = new Ellipse2D.Float( (float)mouseA.tailPosition.getX()-(13f*SCALE)/2f , (float)mouseA.tailPosition.getY() - (13f*SCALE)/2f , 13*SCALE , 13*SCALE ); // 3
+ // System.out.println( animal.eventTimeLineList.get( 29 ).criteriaName );
- g2.draw( head );
- g2.draw( body );
- g2.draw( tail );
+ // create image
- // draw eye view
+ // should parse the all data to find min/max or check video input size.
- double VAx = mouseA.headPosition.getX()-mouseA.bodyPosition.getX();
- double VAy = mouseA.headPosition.getY()-mouseA.bodyPosition.getY();
- double angleA = Math.atan2(VAy, VAx);
+ SCALE = Float.parseFloat(scaleTextField.getText());
- double departAngle1 = - 8d * Math.PI /9d;
- double departAngle2 = 3d * Math.PI /9d;
+ IcyBufferedImage image = new IcyBufferedImage(800, 600, 3, DataType.USHORT);
- // centre
- g2.drawLine(
- (int)mouseA.headPosition.getX() ,
- (int)mouseA.headPosition.getY(),
- (int)(mouseA.headPosition.getX() + Math.cos( angleA ) * 100d ),
- (int)(mouseA.headPosition.getY() + Math.sin( angleA ) * 100d )
- );
+ // check < threshold 1 events
+ for (EventCriteria event : animal.eventTimeLineList.get(0).eventList)
+ {
+ for (int t = event.startFrame; t <= event.endFrame; t++)
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ additiveDrawMouse(mouseA, image, 0);
- // gauche
- g2.drawLine(
- (int)mouseA.headPosition.getX() ,
- (int)mouseA.headPosition.getY(),
- (int)(mouseA.headPosition.getX() + Math.cos( angleA-1*Math.PI /3d ) * 50d ),
- (int)(mouseA.headPosition.getY() + Math.sin( angleA-1*Math.PI /3d ) * 50d )
- );
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+ additiveDrawMouse(mouseB, image, 0);
+ }
+ }
- // gauche full
- g2.drawLine(
- (int)mouseA.headPosition.getX() ,
- (int)mouseA.headPosition.getY(),
- (int)(mouseA.headPosition.getX() + Math.cos( angleA-1*2*Math.PI /3d ) * 100d ),
- (int)(mouseA.headPosition.getY() + Math.sin( angleA-1*2*Math.PI /3d ) * 100d )
- );
-
- // droit
- g2.drawLine(
- (int)mouseA.headPosition.getX() ,
- (int)mouseA.headPosition.getY(),
- (int)(mouseA.headPosition.getX() + Math.cos( angleA+1*Math.PI /3d ) * 50d ),
- (int)(mouseA.headPosition.getY() + Math.sin( angleA+1*Math.PI /3d ) * 50d )
- );
-
- // droit full
- g2.drawLine(
- (int)mouseA.headPosition.getX() ,
- (int)mouseA.headPosition.getY(),
- (int)(mouseA.headPosition.getX() + Math.cos( angleA+1*2*Math.PI /3d ) * 100d ),
- (int)(mouseA.headPosition.getY() + Math.sin( angleA+1*2*Math.PI /3d ) * 100d )
- );
-
-
-
-
- // ------------------------ MOUSE A REGARDE B
-
- // teste A dans la vue.
-
- double VABx = -mouseA.headPosition.getX()+mouseB.headPosition.getX();
- double VABy = -mouseA.headPosition.getY()+mouseB.headPosition.getY();
- double angleBA = Math.atan2(VABy, VABx) ; //+ Math.PI;
-
- boolean eventIsOk = true;
-
- if ( angleMin( angleBA , angleA ) < demiVisionDeSouris )
- {
-
- }else
- {
- eventIsOk = false;
- }
-
- if ( mouseA.distanceIsInferiorToThreshold2 )
- {
- eventIsOk = false ;
- }
-
- g2.setColor( Color.black );
- g2.drawLine(
- (int)mouseA.headPosition.getX() ,
- (int)mouseA.headPosition.getY(),
- (int)(mouseA.headPosition.getX() + Math.cos( angleBA ) * 100d ),
- (int)(mouseA.headPosition.getY() + Math.sin( angleBA ) * 100d )
- );
-
- double angleDif = angleBA - angleA;
+ // check USV
+ for (EventCriteria event : animal.eventTimeLineList.get(29).eventList)
+ {
+ for (int t = event.startFrame; t <= event.endFrame; t++)
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ additiveDrawMouse(mouseA, image, 1);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+ additiveDrawMouse(mouseB, image, 1);
+ }
+ }
- int angleDifDegree = (int)(180d * angleDif / Math.PI );
+ image.dataChanged();
- while ( angleDifDegree > 180 ) angleDifDegree-=360;
- while ( angleDifDegree < -180 ) angleDifDegree+=360;
+ // display image
+ Sequence outPutSequence = new Sequence(image);
+ // Icy.getMainInterface().addSequence( outPutSequence );
+ // save Image
+ File heatMapFile = new File(FileUtil.setExtension(file.getAbsolutePath(), ".heatmap.event.tif"));
+ Saver.save(outPutSequence, heatMapFile);
+ new AnnounceFrame("HeatMapFile saved to " + heatMapFile.getAbsolutePath(), 5);
- }
- }
- // MOUSE B
- {
- g2.setColor( Color.green );
- MouseInfoRecord mouseB = mouseBRecord.get( x );
- if ( mouseB != null )
- {
-// Ellipse2D head = new Ellipse2D.Float( (float)mouseB.headPosition.getX()-4f , (float)mouseB.headPosition.getY() - 4f , 9 , 9 );
-// Ellipse2D body = new Ellipse2D.Float( (float)mouseB.bodyPosition.getX()-8f , (float)mouseB.bodyPosition.getY() - 8f , 17 , 17 );
-// Ellipse2D tail = new Ellipse2D.Float( (float)mouseB.tailPosition.getX()-1f , (float)mouseB.tailPosition.getY() - 1f , 3 , 3 );
+ }
- Ellipse2D head = new Ellipse2D.Float( (float)mouseB.headPosition.getX()-(40f*SCALE)/2f , (float)mouseB.headPosition.getY() - (40f*SCALE)/2f , 40*SCALE , 40*SCALE ); //9
- Ellipse2D body = new Ellipse2D.Float( (float)mouseB.bodyPosition.getX()-(77f*SCALE)/2f , (float)mouseB.bodyPosition.getY() - (77f*SCALE)/2f , 77*SCALE , 77*SCALE ); // 17
- Ellipse2D tail = new Ellipse2D.Float( (float)mouseB.tailPosition.getX()-(13f*SCALE)/2f , (float)mouseB.tailPosition.getY() - (13f*SCALE)/2f , 13*SCALE , 13*SCALE ); // 3
+ private void computeLocationHeatMap()
+ {
- g2.draw( head );
- g2.draw( body );
- g2.draw( tail );
+ // create image
- // draw eye view
+ // should parse the all data to find min/max or check video input size.
- double VAx = mouseB.headPosition.getX()-mouseB.bodyPosition.getX();
- double VAy = mouseB.headPosition.getY()-mouseB.bodyPosition.getY();
- double angleA = Math.atan2(VAy, VAx);
+ SCALE = Float.parseFloat(scaleTextField.getText());
- double departAngle1 = - 8d * Math.PI /9d;
- double departAngle2 = 3d * Math.PI /9d;
+ IcyBufferedImage image = new IcyBufferedImage(800, 600, 4, DataType.USHORT);
- // centre
- g2.drawLine(
- (int)mouseB.headPosition.getX() ,
- (int)mouseB.headPosition.getY(),
- (int)(mouseB.headPosition.getX() + Math.cos( angleA ) * 100d ),
- (int)(mouseB.headPosition.getY() + Math.sin( angleA ) * 100d )
- );
+ // render mice
- // gauche
- g2.drawLine(
- (int)mouseB.headPosition.getX() ,
- (int)mouseB.headPosition.getY(),
- (int)(mouseB.headPosition.getX() + Math.cos( angleA-1*Math.PI /3d ) * 50d ),
- (int)(mouseB.headPosition.getY() + Math.sin( angleA-1*Math.PI /3d ) * 50d )
- );
+ // mouse A
+ for (Integer t : mouseARecord.keySet())
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ additiveDrawMouse(mouseA, image, 0);
+ }
- // gauche full
- g2.drawLine(
- (int)mouseB.headPosition.getX() ,
- (int)mouseB.headPosition.getY(),
- (int)(mouseB.headPosition.getX() + Math.cos( angleA-2*Math.PI /3d ) * 100d ),
- (int)(mouseB.headPosition.getY() + Math.sin( angleA-2*Math.PI /3d ) * 100d )
- );
+ // mouse B
+ for (Integer t : mouseBRecord.keySet())
+ {
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+ additiveDrawMouse(mouseB, image, 1);
+ }
+ // voc event on blue channel. (test purposes)
+ for (Integer t : mouseBRecord.keySet())
+ {
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+ MouseInfoRecord mouseA = mouseARecord.get(t);
- // droit
- g2.drawLine(
- (int)mouseB.headPosition.getX() ,
- (int)mouseB.headPosition.getY(),
- (int)(mouseB.headPosition.getX() + Math.cos( angleA+1*Math.PI /3d ) * 50d ),
- (int)(mouseB.headPosition.getY() + Math.sin( angleA+1*Math.PI /3d ) * 50d )
- );
+ EventTimeLine eventTimeLineWatched = animal.eventTimeLineList.get(29);
+ if (eventTimeLineWatched.getNbEvent(t, t) == 1)
+ {
+ additiveDrawMouse(mouseA, image, 2);
+ additiveDrawMouse(mouseB, image, 3);
+ }
+ }
- // droit full
- g2.drawLine(
- (int)mouseB.headPosition.getX() ,
- (int)mouseB.headPosition.getY(),
- (int)(mouseB.headPosition.getX() + Math.cos( angleA+1*2*Math.PI /3d ) * 100d ),
- (int)(mouseB.headPosition.getY() + Math.sin( angleA+1*2*Math.PI /3d ) * 100d )
- );
+ image.dataChanged();
+ // display image
- }
- }
+ Sequence outPutSequence = new Sequence(image);
+ // Icy.getMainInterface().addSequence( outPutSequence );
- videoTimeLabel.setText( "frame #" + x +
+ // save Image
- " "+ (int)(x/(FPS*60)) +":"+ decimalFormat.format( (int)(x/FPS % 60 ) ) );
+ File heatMapFile = new File(FileUtil.setExtension(file.getAbsolutePath(), ".heatmap.tif"));
+ Saver.save(outPutSequence, heatMapFile);
+ new AnnounceFrame("HeatMapFile saved to " + heatMapFile.getAbsolutePath(), 5);
- imageVideoComponent.setImage( videoImage );
+ }
- //ComponentUtil.setFixedWidth( imageVideoComponent , 400 );
+ private void additiveDrawMouse(MouseInfoRecord mouse, IcyBufferedImage image, int channel)
+ {
- //getImage
+ Ellipse2D head = new Ellipse2D.Float((float) mouse.headPosition.getX() - (40f * SCALE) / 2f,
+ (float) mouse.headPosition.getY() - (40f * SCALE) / 2f, 40 * SCALE, 40 * SCALE); // 9
+ Ellipse2D body = new Ellipse2D.Float((float) mouse.bodyPosition.getX() - (77f * SCALE) / 2f,
+ (float) mouse.bodyPosition.getY() - (77f * SCALE) / 2f, 77 * SCALE, 77 * SCALE); // 17
+ Ellipse2D tail = new Ellipse2D.Float((float) mouse.tailPosition.getX() - (13f * SCALE) / 2f,
+ (float) mouse.tailPosition.getY() - (13f * SCALE) / 2f, 13 * SCALE, 13 * SCALE); // 3
- imageVideoComponent.updateUI();
+ int centerX = 0;
+ int centerY = 0;
+ int ray = 30;
+ additiveDrawOverImage(image, (int) head.getCenterX(), (int) head.getCenterY(), (int) ((40f * SCALE) / 2f),
+ channel);
+ additiveDrawOverImage(image, (int) body.getCenterX(), (int) body.getCenterY(), (int) ((77f * SCALE) / 2f),
+ channel);
+ additiveDrawOverImage(image, (int) tail.getCenterX(), (int) tail.getCenterY(), (int) ((13f * SCALE) / 2f),
+ channel);
- }
+ }
- public double angleMin( double a1 , double a2 )
- {
- double angleMin = Double.MAX_VALUE;
+ private void additiveDrawOverImage(IcyBufferedImage image, int ox, int oy, int r, int channel)
+ {
- a1 = angleToZeroTwoPi(a1);
- a2 = angleToZeroTwoPi(a2);
+ short[] buffer = image.getDataXYAsShort(channel);
+ int width = image.getWidth();
- for ( int i=-2 ; i< 3 ; i++ )
- {
- double dif = Math.abs( a1 + ( i * Math.PI * 2d ) - a2 );
- if ( dif < angleMin ) angleMin = dif;
- }
+ for (int x = -r; x < r; x++)
+ {
+ int height = (int) Math.sqrt(r * r - x * x);
- return angleMin;
- }
+ for (int y = -height; y < height; y++)
+ {
+ // bmp.SetPixel(x + ox, y + oy, Color.Red);
+ buffer[(oy + y) * width + x + ox]++;
+ }
+ }
+ }
- public double angleToZeroTwoPi( double a )
- {
+ private void exportSpeed(XlsManager xls, HashMap<Integer, MouseInfoRecord> mouseRecord, String name)
+ {
- while ( a < 0 )
- {
- a+=2*Math.PI;
- }
- while ( a > 2*Math.PI )
- {
- a-=2*Math.PI;
- }
- return a;
- }
+ xls.createNewPage(name);
+
+ int tMin = 0;
+
+ START_MINUTE = Integer.parseInt(computeImageStartMinuteTextField.getText());
+ NB_MINUTE = Integer.parseInt(computeImageNbMinuteTextField.getText());
+ firstFrame = (int) (tMin + START_MINUTE * 60 * FPS);
+ lastFrame = (int) (firstFrame + NB_MINUTE * 60 * FPS);
+
+ int tMax = lastFrame;
+ /** frameWindow est utilisé pour lisser le calcul de deplacement entre deux points de temps. t-framewindow et t+frameWindow */
+ int frameWindow = 6; // 5
+
+ double speedFrame[] = new double[tMax - firstFrame]; // speed computed at each frame
+
+ xls.setLabel(0, 0, "frame#");
+ xls.setLabel(1, 0, "speed in px/frame time");
+ xls.setLabel(2, 0, "cumulated distance in px");
+
+ {
+ float nbVal = 0;
+ double totalDistance = 0;
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseRecord.containsKey(t - frameWindow))
+ if (mouseRecord.containsKey(t + frameWindow))
+ if (mouseRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseRecordPrev = mouseRecord.get(t - frameWindow);
+ MouseInfoRecord mouseRecordNext = mouseRecord.get(t + frameWindow);
+ MouseInfoRecord mouseRecordCurrentFrame = mouseRecord.get(t);
+
+ float distance = (float) mouseRecordPrev.bodyPosition
+ .distance(mouseRecordNext.bodyPosition);
+ distance /= (float) (frameWindow * 2 + 1); // pour obtenir une vitesse par frame.
+
+ totalDistance += distance;
+
+ mouseRecordCurrentFrame.speed = distance;
+
+ speedFrame[t - firstFrame] = distance;
+ xls.setNumber(0, (int) (nbVal + 1), nbVal);
+ xls.setNumber(1, (int) (nbVal + 1), distance);
+ xls.setNumber(2, (int) (nbVal + 1), totalDistance);
+
+ nbVal++;
+ }
+ }
+
+ }
+
+ xls.setLabel(4, 0, "second#");
+ xls.setLabel(5, 0, "speed in px/s");
+ xls.setLabel(6, 0, "cumulated distance in px");
+
+ // System.out.println("tMax : " + tMax );
+ {
+ int sec = 0;
+ int arrayCounter = 0;
+ double totalDistance = 0;
+ while (arrayCounter < tMax - FPS)
+ {
+
+ double speedSec = 0;
+
+ for (int i = 0; i < FPS; i++)
+ {
+ speedSec += speedFrame[arrayCounter];
+ totalDistance += speedFrame[arrayCounter];
+ arrayCounter++;
+ }
+
+ // speedSec;
+
+ System.out.println("sec:" + sec);
+
+ xls.setNumber(4, sec + 1, sec);
+ xls.setNumber(5, sec + 1, speedSec);
+ xls.setNumber(6, sec + 1, totalDistance);
+
+ sec++;
+ }
+
+ }
+ }
+
+ @Override
+ public void mouseClicked(MouseEvent e)
+ {
+ try
+ {
+ updateVideoImageAt(e.getX());
+ }
+ catch (InterruptedException ex)
+ {
+ // ignore
+ }
+ }
+
+ @Override
+ public void mouseEntered(MouseEvent e)
+ {
+ }
+
+ @Override
+ public void mouseExited(MouseEvent e)
+ {
+ }
+
+ @Override
+ public void mousePressed(MouseEvent e)
+ {
+ }
+
+ @Override
+ public void mouseReleased(MouseEvent e)
+ {
+ }
+
+ @Override
+ public void mouseDragged(MouseEvent e)
+ {
+ try
+ {
+ updateVideoImageAt(e.getX());
+ }
+ catch (InterruptedException ex)
+ {
+ // ignore
+ ex.printStackTrace();
+ }
+ }
+
+ private void updateVideoImageAt(int x) throws InterruptedException
+ {
+
+ x = x + firstFrame;
+ // x = x+ startOffset;
+
+ if (frameAccess == null)
+ {
+ // check if file exists.
+ if (videoFile.exists())
+ {
+ frameAccess = new FrameAccess(videoFile);
+ }
+ else
+ {
+ System.out.println("File specified in XML is not present. Checking in XML folder.");
+ videoFile = new File(FileUtil.getDirectory(file.getAbsolutePath()) + FileUtil.separator
+ + FileUtil.getFileName(videoFile.getName()));
+ frameAccess = new FrameAccess(videoFile);
+ }
+
+ }
+
+ videoImage = frameAccess.getImageAt(x + startOffset + 3);
+
+ if (videoImage == null)
+ {
+ videoImage = IcyBufferedImageUtil.toBufferedImage(new IcyBufferedImage(640, 480, 1, DataType.BYTE),
+ null);
+
+ }
+
+ // draw over.
+
+ Graphics2D g2 = (Graphics2D) videoImage.getGraphics();
+
+ // Mouse A
+ {
+ g2.setColor(Color.red);
+ MouseInfoRecord mouseA = mouseARecord.get(x);
+ MouseInfoRecord mouseB = mouseBRecord.get(x);
+ if (mouseA != null)
+ {
+ SCALE = Float.parseFloat(scaleTextField.getText());
+ // Ellipse2D head = new Ellipse2D.Float( (float)mouseA.headPosition.getX()-4f , (float)mouseA.headPosition.getY() - (40f*SCALE)/2f ,
+ // 40*SCALE , 40*SCALE ); //9
+ // Ellipse2D body = new Ellipse2D.Float( (float)mouseA.bodyPosition.getX()-8f , (float)mouseA.bodyPosition.getY() - (77f*SCALE)/2f ,
+ // 77*SCALE , 77*SCALE ); // 17
+ // Ellipse2D tail = new Ellipse2D.Float( (float)mouseA.tailPosition.getX()-1f , (float)mouseA.tailPosition.getY() - (13f*SCALE)/2f ,
+ // 13*SCALE , 13*SCALE ); // 3
+ // System.out.println(SCALE);
+ Ellipse2D head = new Ellipse2D.Float((float) mouseA.headPosition.getX() - (40f * SCALE) / 2f,
+ (float) mouseA.headPosition.getY() - (40f * SCALE) / 2f, 40 * SCALE, 40 * SCALE); // 9
+ Ellipse2D body = new Ellipse2D.Float((float) mouseA.bodyPosition.getX() - (77f * SCALE) / 2f,
+ (float) mouseA.bodyPosition.getY() - (77f * SCALE) / 2f, 77 * SCALE, 77 * SCALE); // 17
+ Ellipse2D tail = new Ellipse2D.Float((float) mouseA.tailPosition.getX() - (13f * SCALE) / 2f,
+ (float) mouseA.tailPosition.getY() - (13f * SCALE) / 2f, 13 * SCALE, 13 * SCALE); // 3
+
+ g2.draw(head);
+ g2.draw(body);
+ g2.draw(tail);
+
+ // draw eye view
+
+ double VAx = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
+ double VAy = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
+ double angleA = Math.atan2(VAy, VAx);
+
+ double departAngle1 = -8d * Math.PI / 9d;
+ double departAngle2 = 3d * Math.PI / 9d;
+
+ // centre
+ g2.drawLine((int) mouseA.headPosition.getX(), (int) mouseA.headPosition.getY(),
+ (int) (mouseA.headPosition.getX() + Math.cos(angleA) * 100d),
+ (int) (mouseA.headPosition.getY() + Math.sin(angleA) * 100d));
+
+ // gauche
+ g2.drawLine((int) mouseA.headPosition.getX(), (int) mouseA.headPosition.getY(),
+ (int) (mouseA.headPosition.getX() + Math.cos(angleA - 1 * Math.PI / 3d) * 50d),
+ (int) (mouseA.headPosition.getY() + Math.sin(angleA - 1 * Math.PI / 3d) * 50d));
+
+ // gauche full
+ g2.drawLine((int) mouseA.headPosition.getX(), (int) mouseA.headPosition.getY(),
+ (int) (mouseA.headPosition.getX() + Math.cos(angleA - 1 * 2 * Math.PI / 3d) * 100d),
+ (int) (mouseA.headPosition.getY() + Math.sin(angleA - 1 * 2 * Math.PI / 3d) * 100d));
+
+ // droit
+ g2.drawLine((int) mouseA.headPosition.getX(), (int) mouseA.headPosition.getY(),
+ (int) (mouseA.headPosition.getX() + Math.cos(angleA + 1 * Math.PI / 3d) * 50d),
+ (int) (mouseA.headPosition.getY() + Math.sin(angleA + 1 * Math.PI / 3d) * 50d));
+
+ // droit full
+ g2.drawLine((int) mouseA.headPosition.getX(), (int) mouseA.headPosition.getY(),
+ (int) (mouseA.headPosition.getX() + Math.cos(angleA + 1 * 2 * Math.PI / 3d) * 100d),
+ (int) (mouseA.headPosition.getY() + Math.sin(angleA + 1 * 2 * Math.PI / 3d) * 100d));
+
+ // ------------------------ MOUSE A REGARDE B
+
+ // teste A dans la vue.
+
+ double VABx = -mouseA.headPosition.getX() + mouseB.headPosition.getX();
+ double VABy = -mouseA.headPosition.getY() + mouseB.headPosition.getY();
+ double angleBA = Math.atan2(VABy, VABx); // + Math.PI;
+
+ boolean eventIsOk = true;
+
+ if (angleMin(angleBA, angleA) < demiVisionDeSouris)
+ {
+
+ }
+ else
+ {
+ eventIsOk = false;
+ }
+
+ if (mouseA.distanceIsInferiorToThreshold2)
+ {
+ eventIsOk = false;
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine((int) mouseA.headPosition.getX(), (int) mouseA.headPosition.getY(),
+ (int) (mouseA.headPosition.getX() + Math.cos(angleBA) * 100d),
+ (int) (mouseA.headPosition.getY() + Math.sin(angleBA) * 100d));
+
+ double angleDif = angleBA - angleA;
+
+ int angleDifDegree = (int) (180d * angleDif / Math.PI);
+
+ while (angleDifDegree > 180)
+ angleDifDegree -= 360;
+ while (angleDifDegree < -180)
+ angleDifDegree += 360;
+
+ }
+ }
+ // MOUSE B
+ {
+ g2.setColor(Color.green);
+ MouseInfoRecord mouseB = mouseBRecord.get(x);
+ if (mouseB != null)
+ {
+ // Ellipse2D head = new Ellipse2D.Float( (float)mouseB.headPosition.getX()-4f , (float)mouseB.headPosition.getY() - 4f , 9 , 9 );
+ // Ellipse2D body = new Ellipse2D.Float( (float)mouseB.bodyPosition.getX()-8f , (float)mouseB.bodyPosition.getY() - 8f , 17 , 17 );
+ // Ellipse2D tail = new Ellipse2D.Float( (float)mouseB.tailPosition.getX()-1f , (float)mouseB.tailPosition.getY() - 1f , 3 , 3 );
+
+ Ellipse2D head = new Ellipse2D.Float((float) mouseB.headPosition.getX() - (40f * SCALE) / 2f,
+ (float) mouseB.headPosition.getY() - (40f * SCALE) / 2f, 40 * SCALE, 40 * SCALE); // 9
+ Ellipse2D body = new Ellipse2D.Float((float) mouseB.bodyPosition.getX() - (77f * SCALE) / 2f,
+ (float) mouseB.bodyPosition.getY() - (77f * SCALE) / 2f, 77 * SCALE, 77 * SCALE); // 17
+ Ellipse2D tail = new Ellipse2D.Float((float) mouseB.tailPosition.getX() - (13f * SCALE) / 2f,
+ (float) mouseB.tailPosition.getY() - (13f * SCALE) / 2f, 13 * SCALE, 13 * SCALE); // 3
- @Override
- public void mouseMoved(MouseEvent arg0) {
+ g2.draw(head);
+ g2.draw(body);
+ g2.draw(tail);
+ // draw eye view
- }
+ double VAx = mouseB.headPosition.getX() - mouseB.bodyPosition.getX();
+ double VAy = mouseB.headPosition.getY() - mouseB.bodyPosition.getY();
+ double angleA = Math.atan2(VAy, VAx);
+ double departAngle1 = -8d * Math.PI / 9d;
+ double departAngle2 = 3d * Math.PI / 9d;
- }
+ // centre
+ g2.drawLine((int) mouseB.headPosition.getX(), (int) mouseB.headPosition.getY(),
+ (int) (mouseB.headPosition.getX() + Math.cos(angleA) * 100d),
+ (int) (mouseB.headPosition.getY() + Math.sin(angleA) * 100d));
+
+ // gauche
+ g2.drawLine((int) mouseB.headPosition.getX(), (int) mouseB.headPosition.getY(),
+ (int) (mouseB.headPosition.getX() + Math.cos(angleA - 1 * Math.PI / 3d) * 50d),
+ (int) (mouseB.headPosition.getY() + Math.sin(angleA - 1 * Math.PI / 3d) * 50d));
+
+ // gauche full
+ g2.drawLine((int) mouseB.headPosition.getX(), (int) mouseB.headPosition.getY(),
+ (int) (mouseB.headPosition.getX() + Math.cos(angleA - 2 * Math.PI / 3d) * 100d),
+ (int) (mouseB.headPosition.getY() + Math.sin(angleA - 2 * Math.PI / 3d) * 100d));
+
+ // droit
+ g2.drawLine((int) mouseB.headPosition.getX(), (int) mouseB.headPosition.getY(),
+ (int) (mouseB.headPosition.getX() + Math.cos(angleA + 1 * Math.PI / 3d) * 50d),
+ (int) (mouseB.headPosition.getY() + Math.sin(angleA + 1 * Math.PI / 3d) * 50d));
- @Override
- public void keyPressed(KeyEvent arg0) {
- // TODO Auto-generated method stub
+ // droit full
+ g2.drawLine((int) mouseB.headPosition.getX(), (int) mouseB.headPosition.getY(),
+ (int) (mouseB.headPosition.getX() + Math.cos(angleA + 1 * 2 * Math.PI / 3d) * 100d),
+ (int) (mouseB.headPosition.getY() + Math.sin(angleA + 1 * 2 * Math.PI / 3d) * 100d));
- }
+ }
+ }
+
+ videoTimeLabel.setText("frame #" + x +
- @Override
- public void keyReleased(KeyEvent e ) {
+ " " + (int) (x / (FPS * 60)) + ":" + decimalFormat.format((int) (x / FPS % 60)));
+
+ imageVideoComponent.setImage(videoImage);
+
+ // ComponentUtil.setFixedWidth( imageVideoComponent , 400 );
+
+ // getImage
+
+ imageVideoComponent.updateUI();
+
+ }
+
+ public double angleMin(double a1, double a2)
+ {
+ double angleMin = Double.MAX_VALUE;
+
+ a1 = angleToZeroTwoPi(a1);
+ a2 = angleToZeroTwoPi(a2);
+
+ for (int i = -2; i < 3; i++)
+ {
+ double dif = Math.abs(a1 + (i * Math.PI * 2d) - a2);
+ if (dif < angleMin)
+ angleMin = dif;
+ }
+
+ return angleMin;
+ }
+
+ public double angleToZeroTwoPi(double a)
+ {
+
+ while (a < 0)
+ {
+ a += 2 * Math.PI;
+ }
+ while (a > 2 * Math.PI)
+ {
+ a -= 2 * Math.PI;
+ }
+ return a;
+ }
+
+ @Override
+ public void mouseMoved(MouseEvent arg0)
+ {
- if ( e.getSource() == scaleTextField )
- {
- try
- {
- float scale = Float.parseFloat( scaleTextField.getText() );
- float ratio = scale / 0.22f;
+ }
- distance1TextField.setText( "" + ratio * 22 );
- distance2TextField.setText( "" + ratio * 40 );
- distanceHeadHeadTextField.setText( "" + ratio * 15 );
- distanceHeadGenitalTextField.setText( "" + ratio * 15 );
- seuilSideTextField.setText( "" + ratio * 12 );
- speed_threshold1TextField.setText( "" + ratio * 0.5 );
- speed_threshold2TextField.setText( "" + ratio * 2 );
- speed_threshold3TextField.setText( "" + ratio * 4 );
- }
- catch ( NumberFormatException e1 )
- {
+ }
- }
- }
+ @Override
+ public void keyPressed(KeyEvent arg0)
+ {
+ // TODO Auto-generated method stub
- }
+ }
- @Override
- public void keyTyped(KeyEvent e ) {
+ @Override
+ public void keyReleased(KeyEvent e)
+ {
+ if (e.getSource() == scaleTextField)
+ {
+ try
+ {
+ float scale = Float.parseFloat(scaleTextField.getText());
+ float ratio = scale / 0.22f;
+ distance1TextField.setText("" + ratio * 22);
+ distance2TextField.setText("" + ratio * 40);
+ distanceHeadHeadTextField.setText("" + ratio * 15);
+ distanceHeadGenitalTextField.setText("" + ratio * 15);
+ seuilSideTextField.setText("" + ratio * 12);
+ speed_threshold1TextField.setText("" + ratio * 0.5);
+ speed_threshold2TextField.setText("" + ratio * 2);
+ speed_threshold3TextField.setText("" + ratio * 4);
+ }
+ catch (NumberFormatException e1)
+ {
- }
+ }
+ }
+ }
+ @Override
+ public void keyTyped(KeyEvent e)
+ {
+ }
+ @Override
+ public String getMainPluginClassName()
+ {
+ return MiceProfilerTracker.class.getName();
+ }
}
diff --git a/src/main/java/plugins/fab/MiceProfiler/PhyMouse.java b/src/main/java/plugins/fab/MiceProfiler/PhyMouse.java
index f9ac4dc159f6f230adad5cf67c5ddc8655ef1a7d..cceef25d387ef1af4f90a99bd941a2085f33bf5b 100644
--- a/src/main/java/plugins/fab/MiceProfiler/PhyMouse.java
+++ b/src/main/java/plugins/fab/MiceProfiler/PhyMouse.java
@@ -18,17 +18,6 @@
*/
package plugins.fab.MiceProfiler;
-import icy.canvas.IcyCanvas;
-import icy.canvas.IcyCanvas2D;
-import icy.gui.util.GuiUtil;
-import icy.image.IcyBufferedImage;
-import icy.main.Icy;
-import icy.painter.Painter;
-import icy.roi.ROI;
-import icy.roi.ROI2D;
-import icy.sequence.Sequence;
-import icy.type.DataType;
-
import java.awt.AlphaComposite;
import java.awt.BasicStroke;
import java.awt.Color;
@@ -68,6 +57,20 @@ import javax.xml.xpath.XPathConstants;
import javax.xml.xpath.XPathExpressionException;
import javax.xml.xpath.XPathFactory;
+import org.w3c.dom.Document;
+import org.w3c.dom.Element;
+import org.w3c.dom.NodeList;
+
+import icy.canvas.IcyCanvas;
+import icy.canvas.IcyCanvas2D;
+import icy.gui.util.GuiUtil;
+import icy.image.IcyBufferedImage;
+import icy.main.Icy;
+import icy.painter.Painter;
+import icy.roi.ROI;
+import icy.roi.ROI2D;
+import icy.sequence.Sequence;
+import icy.type.DataType;
import net.phys2d.math.ROVector2f;
import net.phys2d.math.Vector2f;
import net.phys2d.raw.Body;
@@ -81,16 +84,11 @@ import net.phys2d.raw.shapes.Polygon;
import net.phys2d.raw.shapes.Shape;
import net.phys2d.raw.strategies.QuadSpaceStrategy;
-import org.w3c.dom.Document;
-import org.w3c.dom.Element;
-import org.w3c.dom.NodeList;
-
-import plugins.fab.MiceProfiler.PhyMouse.MouseInfoRecord;
-
/**
* Physics model of the 2d mouse
*/
-public class PhyMouse implements ActionListener, ChangeListener {
+public class PhyMouse implements ActionListener, ChangeListener
+{
public World world = null;
ArrayList<Body> bodyList = new ArrayList<Body>();
@@ -101,18 +99,16 @@ public class PhyMouse implements ActionListener, ChangeListener {
final float MASSE = 1;
- public Color color = new Color((float) Math.random(),
- (float) Math.random(), (float) Math.random());
+ public Color color = new Color((float) Math.random(), (float) Math.random(), (float) Math.random());
float SCALE = 0.22f;
float SCALERAY = 1f;
float GRADIENT_ENERGY_MULTIPLICATOR = 10000;
float BINARY_ENERGY_MULTIPLICATOR = 10000;
float EAR_ENERGY_MULTIPLICATOR = 10;
-// float GRADIENT_ENERGY_MULTIPLICATOR = 10;
-// float BINARY_ENERGY_MULTIPLICATOR = 10;
-// float EAR_ENERGY_MULTIPLICATOR = 10;
-
+ // float GRADIENT_ENERGY_MULTIPLICATOR = 10;
+ // float BINARY_ENERGY_MULTIPLICATOR = 10;
+ // float EAR_ENERGY_MULTIPLICATOR = 10;
JPanel panel = new JPanel();
@@ -122,8 +118,7 @@ public class PhyMouse implements ActionListener, ChangeListener {
JCheckBox displayBodyShapeCheckBox = new JCheckBox("Body Shape", true);
JCheckBox displayGlobalSplineCheckBox = new JCheckBox("Global Spline", true);
JCheckBox displaySlideJointCheckBox = new JCheckBox("Slide Joint", true);
- JCheckBox displayDistanceJointCheckBox = new JCheckBox("Distance Joint",
- true);
+ JCheckBox displayDistanceJointCheckBox = new JCheckBox("Distance Joint", true);
JCheckBox displayBinaryMapCheckBox = new JCheckBox("Binary Map", false);
JCheckBox displayGradientMapCheckBox = new JCheckBox("Gradient Map", false);
@@ -135,11 +130,9 @@ public class PhyMouse implements ActionListener, ChangeListener {
public int SEUIL_BINARY_MAP = 30;
public int SEUIL_EDGE_MAP = 32;
- JSpinner binaryThresholdSpinner = new JSpinner(new SpinnerNumberModel(
- SEUIL_BINARY_MAP, 0, 255, 10));
+ JSpinner binaryThresholdSpinner = new JSpinner(new SpinnerNumberModel(SEUIL_BINARY_MAP, 0, 255, 10));
- JCheckBox useMotionPredictionCheckBox = new JCheckBox(
- "Use motion prediction", false);
+ JCheckBox useMotionPredictionCheckBox = new JCheckBox("Use motion prediction", false);
JLabel nbTotalIterationLabel = new JLabel("nb total iteration");
JButton resultButton = new JButton("give me the results");
@@ -147,15 +140,14 @@ public class PhyMouse implements ActionListener, ChangeListener {
HashMap<Integer, ArrayList<Body>> bodyHash = new HashMap<Integer, ArrayList<Body>>();
JButton displayScaleBinaryButton = new JButton("display binary scales");
- JButton computeATestAnchorVectorMapButton = new JButton(
- "compute test anchor");
- //JButton applyNewScaleButton = new JButton("Apply new scale");
+ JButton computeATestAnchorVectorMapButton = new JButton("compute test anchor");
+ // JButton applyNewScaleButton = new JButton("Apply new scale");
-// HashMap<Integer, Double> head1head2 = new HashMap<Integer, Double>();
-// HashMap<Integer, Double> bottom1head2 = new HashMap<Integer, Double>();
-// HashMap<Integer, Double> head1bottom2 = new HashMap<Integer, Double>();
-// HashMap<Integer, Double> bottom1head1 = new HashMap<Integer, Double>();
-// HashMap<Integer, Double> bottom2head2 = new HashMap<Integer, Double>();
+ // HashMap<Integer, Double> head1head2 = new HashMap<Integer, Double>();
+ // HashMap<Integer, Double> bottom1head2 = new HashMap<Integer, Double>();
+ // HashMap<Integer, Double> head1bottom2 = new HashMap<Integer, Double>();
+ // HashMap<Integer, Double> bottom1head1 = new HashMap<Integer, Double>();
+ // HashMap<Integer, Double> bottom2head2 = new HashMap<Integer, Double>();
int nbTotalIteration = 0;
@@ -164,7 +156,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
*/
boolean motion_prediction_state = false;
- class MouseView {
+ class MouseView
+ {
Point2D headPosition;
Point2D bodyPosition;
@@ -174,38 +167,31 @@ public class PhyMouse implements ActionListener, ChangeListener {
HashMap<Integer, MouseView> mouse1view = new HashMap<Integer, MouseView>();
HashMap<Integer, MouseView> mouse2view = new HashMap<Integer, MouseView>();
- public PhyMouse(Sequence sequence) {
+ public PhyMouse(Sequence sequence)
+ {
this.sequence = sequence;
if (world == null)
- world = new World(new Vector2f(0, 0), 10, new QuadSpaceStrategy(20,
- 5));
+ world = new World(new Vector2f(0, 0), 10, new QuadSpaceStrategy(20, 5));
world.clear();
world.setGravity(0, 0);
panel = GuiUtil.generatePanel();
- panel.add(GuiUtil.besidesPanel(displayBinaryMapCheckBox,
- displayGradientMapCheckBox));
- panel.add(GuiUtil.besidesPanel(displayForceCheckBox,
- displayEnergyAreaCheckBox));
- panel.add(GuiUtil.besidesPanel(displayBodyCenterCheckBox,
- displayBodyShapeCheckBox));
- panel.add(GuiUtil.besidesPanel(displayGlobalSplineCheckBox,
- displaySlideJointCheckBox));
- panel.add(GuiUtil.besidesPanel(displayDistanceJointCheckBox,
- displayMemoryCheckBox));
+ panel.add(GuiUtil.besidesPanel(displayBinaryMapCheckBox, displayGradientMapCheckBox));
+ panel.add(GuiUtil.besidesPanel(displayForceCheckBox, displayEnergyAreaCheckBox));
+ panel.add(GuiUtil.besidesPanel(displayBodyCenterCheckBox, displayBodyShapeCheckBox));
+ panel.add(GuiUtil.besidesPanel(displayGlobalSplineCheckBox, displaySlideJointCheckBox));
+ panel.add(GuiUtil.besidesPanel(displayDistanceJointCheckBox, displayMemoryCheckBox));
panel.add(GuiUtil.besidesPanel(useMotionPredictionCheckBox));
- panel.add(GuiUtil.besidesPanel(new JLabel("Binary Threshold:"),
- binaryThresholdSpinner));
+ panel.add(GuiUtil.besidesPanel(new JLabel("Binary Threshold:"), binaryThresholdSpinner));
scaleTextField.setText("" + SCALE);
JLabel mouseModelScaleLabel = new JLabel("Mouse Model Scale:");
mouseModelScaleLabel.setToolTipText("Scale of the model.");
-
panel.add(GuiUtil.besidesPanel(mouseModelScaleLabel, scaleTextField)); // applyNewScaleButton
- //applyNewScaleButton.addActionListener( this );
+ // applyNewScaleButton.addActionListener( this );
binaryThresholdSpinner.addChangeListener(this);
@@ -225,41 +211,42 @@ public class PhyMouse implements ActionListener, ChangeListener {
displayGradientMapCheckBox.addActionListener(this);
}
- public void setScaleFieldEnable(boolean enable) {
+ public void setScaleFieldEnable(boolean enable)
+ {
scaleTextField.setEnabled(enable);
}
- public void generateMouse(float x, float y, float alpha) {
+ public void generateMouse(float x, float y, float alpha)
+ {
SCALE = Float.parseFloat(scaleTextField.getText());
-// GRADIENT_ENERGY_MULTIPLICATOR = (float) (( 10f * SCALE ) / 0.22 );
-// BINARY_ENERGY_MULTIPLICATOR = (float) (( 10f * SCALE ) / 0.22 );
-// EAR_ENERGY_MULTIPLICATOR = (float) (( 10f * SCALE ) / 0.22 );
+ // GRADIENT_ENERGY_MULTIPLICATOR = (float) (( 10f * SCALE ) / 0.22 );
+ // BINARY_ENERGY_MULTIPLICATOR = (float) (( 10f * SCALE ) / 0.22 );
+ // EAR_ENERGY_MULTIPLICATOR = (float) (( 10f * SCALE ) / 0.22 );
mouseList.add(new Mouse(x, y, alpha));
}
- Body copyBody(Body source) {
+ Body copyBody(Body source)
+ {
Body target = null;
- if (source.getShape() instanceof Box) {
+ if (source.getShape() instanceof Box)
+ {
final Box box = (Box) source.getShape();
- target = new Body("", new Box(box.getSize().getX(), box.getSize()
- .getY()), source.getMass());
+ target = new Body("", new Box(box.getSize().getX(), box.getSize().getY()), source.getMass());
}
- if (source.getShape() instanceof Circle) {
+ if (source.getShape() instanceof Circle)
+ {
final Circle circle = (Circle) source.getShape();
- target = new Body("", new Circle(circle.getRadius()),
- source.getMass());
+ target = new Body("", new Circle(circle.getRadius()), source.getMass());
}
target.setDamping(source.getDamping());
- target.setPosition(source.getPosition().getX(), source.getPosition()
- .getY());
+ target.setPosition(source.getPosition().getX(), source.getPosition().getY());
target.setGravityEffected(false);
target.setRotation(source.getRotation());
- target.adjustVelocity(new Vector2f(source.getVelocity().getX(), source
- .getVelocity().getY()));
+ target.adjustVelocity(new Vector2f(source.getVelocity().getX(), source.getVelocity().getY()));
final EnergyInfo energyInfo = (EnergyInfo) source.getUserData();
target.setUserData(energyInfo);
@@ -267,7 +254,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
return target;
}
- public class Mouse {
+ public class Mouse
+ {
Body nose = null;
Body earL = null;
@@ -294,17 +282,15 @@ public class PhyMouse implements ActionListener, ChangeListener {
ArrayList<Body> bodyList = new ArrayList<Body>();
- void setPosition(Body body, float x, float y, float dx, float dy,
- float alpha) {
+ void setPosition(Body body, float x, float y, float dx, float dy, float alpha)
+ {
x *= SCALE;
y *= SCALE;
Point2D point = new Point2D.Float(x, y);
- final float xx = (float) (Math.cos(alpha) * (x - 0)
- - Math.sin(alpha) * (y - 0) + 0);
- final float yy = (float) (Math.cos(alpha) * (y - 0)
- + Math.sin(alpha) * (x - 0) + 0);
+ final float xx = (float) (Math.cos(alpha) * (x - 0) - Math.sin(alpha) * (y - 0) + 0);
+ final float yy = (float) (Math.cos(alpha) * (y - 0) + Math.sin(alpha) * (x - 0) + 0);
point = new Point2D.Float(xx + dx, yy + dy);
@@ -318,42 +304,36 @@ public class PhyMouse implements ActionListener, ChangeListener {
public Body tail;
public Body headBody;
- public Mouse(float x, float y, float alpha) {
+ public Mouse(float x, float y, float alpha)
+ {
Body neckBody;
- tommyBody = generateBody2(BodyType.CIRCLE, 1, 60, 30, 30,
- EnergyMap.BINARY_MOUSE, false, true);
+ tommyBody = generateBody2(BodyType.CIRCLE, 1, 60, 30, 30, EnergyMap.BINARY_MOUSE, false, true);
bodyList.add(tommyBody);
setPosition(tommyBody, 0f, 80f, x, y, alpha);
- final Body tommyR = generateBody2(BodyType.BOX, 1, 60, 20, 60,
- EnergyMap.NO_ENERGY, true, true);
+ final Body tommyR = generateBody2(BodyType.BOX, 1, 60, 20, 60, EnergyMap.NO_ENERGY, true, true);
bodyList.add(tommyR);
setPosition(tommyR, 20f, 80f, x, y, alpha);
- final Body tommyL = generateBody2(BodyType.BOX, 1, 60, 20, 60,
- EnergyMap.NO_ENERGY, true, true);
+ final Body tommyL = generateBody2(BodyType.BOX, 1, 60, 20, 60, EnergyMap.NO_ENERGY, true, true);
bodyList.add(tommyL);
setPosition(tommyL, -20f, 80f, x, y, alpha);
- final Body tommyBL = generateBody2(BodyType.BOX, 1, 20, 10, 10,
- EnergyMap.GRADIENT_MAP, true, true);
+ final Body tommyBL = generateBody2(BodyType.BOX, 1, 20, 10, 10, EnergyMap.GRADIENT_MAP, true, true);
bodyList.add(tommyBL);
setPosition(tommyBL, -20f, 120f, x, y, alpha);
- final Body tommyBR = generateBody2(BodyType.BOX, 1, 20, 10, 10,
- EnergyMap.GRADIENT_MAP, true, true);
+ final Body tommyBR = generateBody2(BodyType.BOX, 1, 20, 10, 10, EnergyMap.GRADIENT_MAP, true, true);
bodyList.add(tommyBR);
setPosition(tommyBR, 20f, 120f, x, y, alpha);
- final Body tommyBLC = generateBody2(BodyType.BOX, 1, 20, 10, 10,
- EnergyMap.GRADIENT_MAP, true, true);
+ final Body tommyBLC = generateBody2(BodyType.BOX, 1, 20, 10, 10, EnergyMap.GRADIENT_MAP, true, true);
bodyList.add(tommyBLC);
setPosition(tommyBLC, -20f, 60f, x, y, alpha);
- final Body tommyBRC = generateBody2(BodyType.BOX, 1, 20, 10, 10,
- EnergyMap.GRADIENT_MAP, true, true);
+ final Body tommyBRC = generateBody2(BodyType.BOX, 1, 20, 10, 10, EnergyMap.GRADIENT_MAP, true, true);
bodyList.add(tommyBRC);
setPosition(tommyBRC, 20f, 60f, x, y, alpha);
@@ -380,15 +360,13 @@ public class PhyMouse implements ActionListener, ChangeListener {
// create neck
- neckBody = generateBody2(BodyType.BOX, 1, 0, 20, 60,
- EnergyMap.NO_ENERGY, true, true);
+ neckBody = generateBody2(BodyType.BOX, 1, 0, 20, 60, EnergyMap.NO_ENERGY, true, true);
bodyList.add(neckBody);
setPosition(neckBody, 0f, 60f, x, y, alpha);
neckBody.addExcludedBody(tommyBody);
- neckAttachBody = generateBody2(BodyType.CIRCLE, 1, 0, 5,
- 5, EnergyMap.NO_ENERGY, true, true);
+ neckAttachBody = generateBody2(BodyType.CIRCLE, 1, 0, 5, 5, EnergyMap.NO_ENERGY, true, true);
bodyList.add(neckAttachBody);
setPosition(neckAttachBody, 0f, 30f, x, y, alpha);
@@ -399,8 +377,7 @@ public class PhyMouse implements ActionListener, ChangeListener {
generateSlideJoint(neckBody, tommyBody, 0, 4);
- headBody = generateBody2(BodyType.CIRCLE, 1, 50, 20, 20,
- EnergyMap.GRADIENT_MAP, false, true);
+ headBody = generateBody2(BodyType.CIRCLE, 1, 50, 20, 20, EnergyMap.GRADIENT_MAP, false, true);
bodyList.add(headBody);
setPosition(headBody, 0f, 0f, x, y, alpha);
headBody.setRotation((float) (Math.PI / 4f));
@@ -408,26 +385,26 @@ public class PhyMouse implements ActionListener, ChangeListener {
generateSlideJoint(neckAttachBody, headBody, 0, 2);
// Was no energy
- tail = generateBody2(BodyType.CIRCLE, 1, 0, 5, 5,
- EnergyMap.NO_ENERGY, true, true); // false
+ tail = generateBody2(BodyType.CIRCLE, 1, 0, 5, 5, EnergyMap.NO_ENERGY, true, true); // false
bodyList.add(tail);
setPosition(tail, 0f, 120f, x, y, alpha);
world.add(new FixedJoint(tommyBody, tail));
- for (final Mouse mouse : mouseList) {
+ for (final Mouse mouse : mouseList)
+ {
// create link with existing mice
- if (mouse != this) {
+ if (mouse != this)
+ {
for (final Body bodyA : bodyList)
- for (final Body bodyB : mouse.bodyList) {
+ for (final Body bodyB : mouse.bodyList)
+ {
- final EnergyInfo eA = (EnergyInfo) bodyA
- .getUserData();
- final EnergyInfo eB = (EnergyInfo) bodyB
- .getUserData();
+ final EnergyInfo eA = (EnergyInfo) bodyA.getUserData();
+ final EnergyInfo eB = (EnergyInfo) bodyB.getUserData();
- if (eA.excludeFromOtherMouse
- || eB.excludeFromOtherMouse) {
+ if (eA.excludeFromOtherMouse || eB.excludeFromOtherMouse)
+ {
bodyA.addExcludedBody(bodyB);
bodyB.addExcludedBody(bodyA);
@@ -438,7 +415,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
}
}
- for (final Body body : bodyList) {
+ for (final Body body : bodyList)
+ {
final EnergyInfo e = (EnergyInfo) body.getUserData();
e.mouse = this;
}
@@ -447,25 +425,27 @@ public class PhyMouse implements ActionListener, ChangeListener {
}
- enum BodyType {
+ enum BodyType
+ {
BOX, CIRCLE;
}
- public Body generateBody2(BodyType bodyType, float mass, float ray,
- float width, float height, EnergyMap energyMap,
- boolean excludeFromOtherMouseContact,
- boolean excludeFromAttractiveMapOwner) {
+ public Body generateBody2(BodyType bodyType, float mass, float ray, float width, float height, EnergyMap energyMap,
+ boolean excludeFromOtherMouseContact, boolean excludeFromAttractiveMapOwner)
+ {
Body body = null;
- if (bodyType == BodyType.BOX) {
+ if (bodyType == BodyType.BOX)
+ {
body = new Body("", new Box(width * SCALE, height * SCALE), mass);
}
- if (bodyType == BodyType.CIRCLE) {
+ if (bodyType == BodyType.CIRCLE)
+ {
body = new Body("", new Circle(width * SCALE), mass);
}
- body.setUserData(new EnergyInfo(ray * SCALE * SCALERAY, energyMap,
- excludeFromOtherMouseContact, excludeFromAttractiveMapOwner));
+ body.setUserData(new EnergyInfo(ray * SCALE * SCALERAY, energyMap, excludeFromOtherMouseContact,
+ excludeFromAttractiveMapOwner));
body.setDamping(0.1f);
body.setGravityEffected(false);
@@ -478,17 +458,18 @@ public class PhyMouse implements ActionListener, ChangeListener {
ArrayList<Mouse> mouseList = new ArrayList<Mouse>();
- class EnergyInfo {
- EnergyInfo(float ray, EnergyMap energyMap,
- boolean excludeFromOtherMouse,
- boolean excludeFromAttractiveMapOwner) {
+ class EnergyInfo
+ {
+ EnergyInfo(float ray, EnergyMap energyMap, boolean excludeFromOtherMouse, boolean excludeFromAttractiveMapOwner)
+ {
this.ray = ray;
this.energyMap = energyMap;
this.excludeFromOtherMouse = excludeFromOtherMouse;
this.excludeFromAttractiveMapOwner = excludeFromAttractiveMapOwner;
}
- public Object copy() {
+ public Object copy()
+ {
return null;
}
@@ -519,7 +500,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
}
- public enum EnergyMap {
+ public enum EnergyMap
+ {
NO_ENERGY, GRADIENT_MAP, BINARY_MOUSE, BINARY_EAR, SPECIAL_ENERGY, SPECIAL_ENERGY2;
}
@@ -529,15 +511,16 @@ public class PhyMouse implements ActionListener, ChangeListener {
BufferedImage earMap = null;
IcyBufferedImage edgeMap = null;
- public void computeForcesMap(IcyBufferedImage imageSource) {
-
- //System.out.println( "refresh boolean: " + reverseThresholdBoolean );
+ public void computeForcesMap(IcyBufferedImage imageSource)
+ {
+ // System.out.println( "refresh boolean: " + reverseThresholdBoolean );
ROI2D clipROI = null;
Sequence activeSequence = Icy.getMainInterface().getFocusedSequence();
if (activeSequence != null)
- for (ROI roi : activeSequence.getROIs()) {
+ for (ROI roi : activeSequence.getROIs())
+ {
clipROI = (ROI2D) roi;
}
@@ -545,22 +528,22 @@ public class PhyMouse implements ActionListener, ChangeListener {
final int imageSourceWidth = imageSource.getWidth();
final int imageSourceHeight = imageSource.getHeight();
- if (binaryMap == null) {
+ if (binaryMap == null)
+ {
- binaryMap = new IcyBufferedImage(imageSourceWidth,
- imageSourceHeight, 1, DataType.UBYTE);
+ binaryMap = new IcyBufferedImage(imageSourceWidth, imageSourceHeight, 1, DataType.UBYTE);
}
- if ((binaryMap.getWidth() != imageSourceWidth)
- || (binaryMap.getHeight() != imageSourceHeight)) {
- binaryMap = new IcyBufferedImage(imageSourceWidth,
- imageSourceHeight, 1, DataType.UBYTE);
+ if ((binaryMap.getWidth() != imageSourceWidth) || (binaryMap.getHeight() != imageSourceHeight))
+ {
+ binaryMap = new IcyBufferedImage(imageSourceWidth, imageSourceHeight, 1, DataType.UBYTE);
}
final byte[] binaryMapDataBuffer = binaryMap.getDataXYAsByte(0);
final byte[] imageSourceDataBuffer = imageSource.getDataXYAsByte(1);
for (int x = 0; x < imageSourceWidth; x++)
- for (int y = 0; y < imageSourceHeight; y++) {
+ for (int y = 0; y < imageSourceHeight; y++)
+ {
int val = imageSourceDataBuffer[x + y * imageSourceWidth] & 0xFF;
@@ -569,16 +552,20 @@ public class PhyMouse implements ActionListener, ChangeListener {
else
val = 0;
- if (reverseThresholdBoolean) {
- if (val == 255) {
+ if (reverseThresholdBoolean)
+ {
+ if (val == 255)
+ {
val = 0;
}
- else {
+ else
+ {
val = 255;
}
}
- if (clipROI != null) {
+ if (clipROI != null)
+ {
if (!clipROI.contains(x, y))
val = 0;
}
@@ -588,9 +575,9 @@ public class PhyMouse implements ActionListener, ChangeListener {
}
// compute Edge Object EnergyMap
- if (edgeMap == null) {
- edgeMap = new IcyBufferedImage(imageSourceWidth, imageSourceHeight,
- 1, DataType.UBYTE);
+ if (edgeMap == null)
+ {
+ edgeMap = new IcyBufferedImage(imageSourceWidth, imageSourceHeight, 1, DataType.UBYTE);
}
final int maxWidth = binaryMap.getWidth() - 1;
@@ -599,14 +586,13 @@ public class PhyMouse implements ActionListener, ChangeListener {
final byte[] edgeMapDataBuffer = edgeMap.getDataXYAsByte(0);
for (int x = 1; x < maxWidth; x++)
- for (int y = 1; y < maxHeight; y++) {
+ for (int y = 1; y < maxHeight; y++)
+ {
final int val1 = binaryMapDataBuffer[x + y * imageSourceWidth] & 0xFF;
- final int val2 = binaryMapDataBuffer[x + 1 + y
- * imageSourceWidth] & 0xFF;
+ final int val2 = binaryMapDataBuffer[x + 1 + y * imageSourceWidth] & 0xFF;
- final int val4 = binaryMapDataBuffer[x + (y + 1)
- * imageSourceWidth] & 0xFF;
+ final int val4 = binaryMapDataBuffer[x + (y + 1) * imageSourceWidth] & 0xFF;
int val = Math.abs(val1 - val2) + Math.abs(val1 - val4);
@@ -625,10 +611,11 @@ public class PhyMouse implements ActionListener, ChangeListener {
*
* @param set255
*/
- private void drawCircleInMaskMap(int centreX, int centreY, int ray,
- IcyBufferedImage maskImage, boolean set255) {
+ private void drawCircleInMaskMap(int centreX, int centreY, int ray, IcyBufferedImage maskImage, boolean set255)
+ {
byte val = 0;
- if (set255) {
+ if (set255)
+ {
val = (byte) 255;
}
@@ -640,98 +627,102 @@ public class PhyMouse implements ActionListener, ChangeListener {
for (int y = -ray; y <= ray; y++)
for (int x = -ray; x <= ray; x++)
- if (x * x + y * y <= raySquare) {
+ if (x * x + y * y <= raySquare)
+ {
final int xx = centreX + x;
final int yy = centreY + y;
if (xx >= 0)
if (yy >= 0)
if (xx < width)
- if (yy < height) {
+ if (yy < height)
+ {
maskMapData[xx + yy * width] = val;
}
}
}
- public void computeForces() {
+ public void computeForces()
+ {
// force location of the head
- if (headForcedPosition[0] != null) {
+ if (headForcedPosition[0] != null)
+ {
MAnchor2D pos = headForcedPosition[0];
mouseList.get(0).headBody.setPosition((float) pos.getX(), (float) pos.getY());
}
- if (headForcedPosition[1] != null) {
+ if (headForcedPosition[1] != null)
+ {
MAnchor2D pos = headForcedPosition[1];
mouseList.get(1).headBody.setPosition((float) pos.getX(), (float) pos.getY());
}
-
-// for (final Body body : bodyList) {
-// // first mouse
-// if( body == mouseList.get( 0 ).headBody )
-// {
-// if ( headForcedPosition[0] !=null )
-// {
-// vx = (float) (body.getPosition().getX() - headForcedPosition[0].getPositionX());
-// vy = (float) (body.getPosition().getY() - headForcedPosition[0].getPositionY());
-// vx*=BINARY_ENERGY_MULTIPLICATOR;
-// vy*=BINARY_ENERGY_MULTIPLICATOR;
-// }
-// }
-// // second mouse
-// if( body == mouseList.get( 1 ).headBody )
-// {
-// if ( headForcedPosition[1] !=null )
-// {
-// vx = (float) (body.getPosition().getX() - headForcedPosition[1].getPositionX());
-// vy = (float) (body.getPosition().getY() - headForcedPosition[1].getPositionY());
-// vx*=BINARY_ENERGY_MULTIPLICATOR;
-// vy*=BINARY_ENERGY_MULTIPLICATOR;
-// }
-// }
-// }
+ // for (final Body body : bodyList) {
+ // // first mouse
+ // if( body == mouseList.get( 0 ).headBody )
+ // {
+ // if ( headForcedPosition[0] !=null )
+ // {
+ // vx = (float) (body.getPosition().getX() - headForcedPosition[0].getPositionX());
+ // vy = (float) (body.getPosition().getY() - headForcedPosition[0].getPositionY());
+ // vx*=BINARY_ENERGY_MULTIPLICATOR;
+ // vy*=BINARY_ENERGY_MULTIPLICATOR;
+ // }
+ // }
+ // // second mouse
+ // if( body == mouseList.get( 1 ).headBody )
+ // {
+ // if ( headForcedPosition[1] !=null )
+ // {
+ // vx = (float) (body.getPosition().getX() - headForcedPosition[1].getPositionX());
+ // vy = (float) (body.getPosition().getY() - headForcedPosition[1].getPositionY());
+ // vx*=BINARY_ENERGY_MULTIPLICATOR;
+ // vy*=BINARY_ENERGY_MULTIPLICATOR;
+ // }
+ // }
+ // }
// compute forces
- final IcyBufferedImage maskMap = new IcyBufferedImage(
- binaryMap.getWidth(), binaryMap.getHeight(), 1,
+ final IcyBufferedImage maskMap = new IcyBufferedImage(binaryMap.getWidth(), binaryMap.getHeight(), 1,
DataBuffer.TYPE_BYTE);
final byte[] maskMapData = maskMap.getDataXYAsByte(0);
final int maskMapWidth = maskMap.getWidth();
// apply energy.
- for (final Body body : bodyList) {
+ for (final Body body : bodyList)
+ {
{
final int length = maskMapData.length;
- for (int i = 0; i < length; i++) {
+ for (int i = 0; i < length; i++)
+ {
maskMapData[i] = 0;
}
}
final EnergyInfo energyInfo = (EnergyInfo) body.getUserData();
- drawCircleInMaskMap((int) body.getLastPosition().getX(), (int) body
- .getLastPosition().getY(), (int) energyInfo.ray, maskMap,
- true);
+ drawCircleInMaskMap((int) body.getLastPosition().getX(), (int) body.getLastPosition().getY(),
+ (int) energyInfo.ray, maskMap, true);
for (final Body body2 : bodyList)
- if (body != body2) {
- final EnergyInfo energyInfo2 = (EnergyInfo) body2
- .getUserData();
+ if (body != body2)
+ {
+ final EnergyInfo energyInfo2 = (EnergyInfo) body2.getUserData();
if (energyInfo.energyMap == energyInfo2.energyMap)
- if (energyInfo2.excludeFromAttractiveMapOwner) {
- drawCircleInMaskMap((int) body2.getLastPosition()
- .getX(), (int) body2.getLastPosition()
- .getY(), (int) energyInfo2.ray, maskMap,
- false);
+ if (energyInfo2.excludeFromAttractiveMapOwner)
+ {
+ drawCircleInMaskMap((int) body2.getLastPosition().getX(),
+ (int) body2.getLastPosition().getY(), (int) energyInfo2.ray, maskMap, false);
}
}
- if (energyInfo.energyMap == EnergyMap.BINARY_MOUSE) {
+ if (energyInfo.energyMap == EnergyMap.BINARY_MOUSE)
+ {
float vx = 0;
float vy = 0;
float count = 0;
@@ -744,7 +735,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
final byte[] binaryMapDataBuffer = binaryMap.getDataXYAsByte(0);
for (int x = (int) (body.getLastPosition().getX() - energyInfo.ray); x < maxX; x++)
- for (int y = (int) (body.getLastPosition().getY() - energyInfo.ray); y < maxY; y++) {
+ for (int y = (int) (body.getLastPosition().getY() - energyInfo.ray); y < maxY; y++)
+ {
if (x >= imageWidth)
continue;
if (y >= imageHeight)
@@ -755,24 +747,26 @@ public class PhyMouse implements ActionListener, ChangeListener {
continue;
float factor = 0.5f;
- if (maskMapData[x + y * maskMapWidth] != 0) {
+ if (maskMapData[x + y * maskMapWidth] != 0)
+ {
factor = 1f;
}
- if (maskMapData[x + y * maskMapWidth] != 0) {
+ if (maskMapData[x + y * maskMapWidth] != 0)
+ {
- if ((binaryMapDataBuffer[x + y * imageWidth] & 0xFF) == 255) {
- vx += (x - body.getLastPosition().getX())
- * factor;
- vy += (y - body.getLastPosition().getY())
- * factor;
+ if ((binaryMapDataBuffer[x + y * imageWidth] & 0xFF) == 255)
+ {
+ vx += (x - body.getLastPosition().getX()) * factor;
+ vy += (y - body.getLastPosition().getY()) * factor;
}
count++;
}
}
- if (count > 0) {
+ if (count > 0)
+ {
vx /= count;
vy /= count;
}
@@ -780,11 +774,11 @@ public class PhyMouse implements ActionListener, ChangeListener {
vx *= BINARY_ENERGY_MULTIPLICATOR;
vy *= BINARY_ENERGY_MULTIPLICATOR;
-// vx *= BINARY_ENERGY_MULTIPLICATOR;
-// vy *= BINARY_ENERGY_MULTIPLICATOR;
-//
-// energyInfo.vx = vx / 10f;
-// energyInfo.vy = vy / 10f;
+ // vx *= BINARY_ENERGY_MULTIPLICATOR;
+ // vy *= BINARY_ENERGY_MULTIPLICATOR;
+ //
+ // energyInfo.vx = vx / 10f;
+ // energyInfo.vy = vy / 10f;
energyInfo.vx = vx;
energyInfo.vy = vy;
@@ -792,7 +786,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
body.setForce(vx, vy);
}
- if (energyInfo.energyMap == EnergyMap.GRADIENT_MAP) {
+ if (energyInfo.energyMap == EnergyMap.GRADIENT_MAP)
+ {
float vx = 0;
float vy = 0;
float count = 0;
@@ -806,7 +801,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
final int maxY = (int) (body.getLastPosition().getY() + energyInfo.ray);
for (int x = (int) (body.getLastPosition().getX() - energyInfo.ray); x < maxX; x++)
- for (int y = (int) (body.getLastPosition().getY() - energyInfo.ray); y < maxY; y++) {
+ for (int y = (int) (body.getLastPosition().getY() - energyInfo.ray); y < maxY; y++)
+ {
// if ( mask.contains( x ,y ) )
if (x >= imageWidth)
@@ -818,9 +814,11 @@ public class PhyMouse implements ActionListener, ChangeListener {
if (y < 0)
continue;
- if (maskMapData[x + y * maskMapWidth] != 0) {
+ if (maskMapData[x + y * maskMapWidth] != 0)
+ {
- if ((edgeMapDataBuffer[x + y * imageWidth] & 0xFF) != 0) {
+ if ((edgeMapDataBuffer[x + y * imageWidth] & 0xFF) != 0)
+ {
vx += x - body.getLastPosition().getX();
vy += y - body.getLastPosition().getY();
@@ -829,7 +827,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
}
}
- if (count > 0) {
+ if (count > 0)
+ {
vx /= count;
vy /= count;
}
@@ -837,8 +836,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
vx *= GRADIENT_ENERGY_MULTIPLICATOR; // *50
vy *= GRADIENT_ENERGY_MULTIPLICATOR;
-// energyInfo.vx = vx / 10f;
-// energyInfo.vy = vy / 10f;
+ // energyInfo.vx = vx / 10f;
+ // energyInfo.vy = vy / 10f;
energyInfo.vx = vx;
energyInfo.vy = vy;
@@ -855,25 +854,32 @@ public class PhyMouse implements ActionListener, ChangeListener {
Sequence sequence = null;
- class MouseInfoRecord {
+ class MouseInfoRecord
+ {
Point2D headPosition;
Point2D tailPosition;
Point2D bodyPosition;
Point2D neckPosition; // body that links to the head to compute head angle.
}
- public void swapIdentityRecordFromTToTheEnd(int time) {
+ public void swapIdentityRecordFromTToTheEnd(int time)
+ {
// look for maximum time recorded
int maxT = 0;
- for (int i : mouseARecord.keySet()) {
- if (i > maxT) maxT = i;
+ for (int i : mouseARecord.keySet())
+ {
+ if (i > maxT)
+ maxT = i;
}
- for (int i : mouseBRecord.keySet()) {
- if (i > maxT) maxT = i;
+ for (int i : mouseBRecord.keySet())
+ {
+ if (i > maxT)
+ maxT = i;
}
// swap data
- for (int t = time; t <= maxT; t++) {
+ for (int t = time; t <= maxT; t++)
+ {
MouseInfoRecord recA = mouseARecord.get(t);
MouseInfoRecord recB = mouseBRecord.get(t);
@@ -886,64 +892,62 @@ public class PhyMouse implements ActionListener, ChangeListener {
HashMap<Integer, MouseInfoRecord> mouseARecord = new HashMap<Integer, MouseInfoRecord>();
HashMap<Integer, MouseInfoRecord> mouseBRecord = new HashMap<Integer, MouseInfoRecord>();
- public void recordMousePosition(int currentFrame) {
+ public void recordMousePosition(int currentFrame)
+ {
// record mouse A
{
final MouseInfoRecord mouseAInfo = new MouseInfoRecord();
- mouseAInfo.headPosition = new Point2D.Float(
- mouseList.get(0).headBody.getPosition().getX(),
+ mouseAInfo.headPosition = new Point2D.Float(mouseList.get(0).headBody.getPosition().getX(),
mouseList.get(0).headBody.getPosition().getY());
- mouseAInfo.bodyPosition = new Point2D.Float(
- mouseList.get(0).tommyBody.getPosition().getX(),
+ mouseAInfo.bodyPosition = new Point2D.Float(mouseList.get(0).tommyBody.getPosition().getX(),
mouseList.get(0).tommyBody.getPosition().getY());
- mouseAInfo.tailPosition = new Point2D.Float(mouseList.get(0).tail
- .getPosition().getX(), mouseList.get(0).tail.getPosition()
- .getY());
- mouseAInfo.neckPosition = new Point2D.Float(mouseList.get(0).neckAttachBody
- .getPosition().getX(), mouseList.get(0).neckAttachBody.getPosition()
- .getY());
+ mouseAInfo.tailPosition = new Point2D.Float(mouseList.get(0).tail.getPosition().getX(),
+ mouseList.get(0).tail.getPosition().getY());
+ mouseAInfo.neckPosition = new Point2D.Float(mouseList.get(0).neckAttachBody.getPosition().getX(),
+ mouseList.get(0).neckAttachBody.getPosition().getY());
mouseARecord.put(currentFrame, mouseAInfo);
}
// record mouse B
if (mouseList.size() > 1) // is there 2 mice ?
{
final MouseInfoRecord mouseBInfo = new MouseInfoRecord();
- mouseBInfo.headPosition = new Point2D.Float(
- mouseList.get(1).headBody.getPosition().getX(),
+ mouseBInfo.headPosition = new Point2D.Float(mouseList.get(1).headBody.getPosition().getX(),
mouseList.get(1).headBody.getPosition().getY());
- mouseBInfo.bodyPosition = new Point2D.Float(
- mouseList.get(1).tommyBody.getPosition().getX(),
+ mouseBInfo.bodyPosition = new Point2D.Float(mouseList.get(1).tommyBody.getPosition().getX(),
mouseList.get(1).tommyBody.getPosition().getY());
- mouseBInfo.tailPosition = new Point2D.Float(mouseList.get(1).tail
- .getPosition().getX(), mouseList.get(1).tail.getPosition()
- .getY());
- mouseBInfo.neckPosition = new Point2D.Float(mouseList.get(1).neckAttachBody
- .getPosition().getX(), mouseList.get(1).neckAttachBody.getPosition()
- .getY());
+ mouseBInfo.tailPosition = new Point2D.Float(mouseList.get(1).tail.getPosition().getX(),
+ mouseList.get(1).tail.getPosition().getY());
+ mouseBInfo.neckPosition = new Point2D.Float(mouseList.get(1).neckAttachBody.getPosition().getX(),
+ mouseList.get(1).neckAttachBody.getPosition().getY());
mouseBRecord.put(currentFrame, mouseBInfo);
}
}
- public void worldStep(int currentFrame) {
+ public void worldStep(int currentFrame)
+ {
motion_prediction_state = false;
world.step();
nbTotalIteration++;
- while (pauseTrackAllBox.isSelected()) {
- try {
+ while (pauseTrackAllBox.isSelected())
+ {
+ try
+ {
Thread.sleep(100);
}
- catch (final InterruptedException e) {
+ catch (final InterruptedException e)
+ {
e.printStackTrace();
}
}
recordMousePosition(currentFrame);
- if (displayStepBox.isSelected()) {
+ if (displayStepBox.isSelected())
+ {
sequence.painterChanged(null);
}
@@ -952,20 +956,22 @@ public class PhyMouse implements ActionListener, ChangeListener {
/**
* Applique la motion prediction et passe l'inertie a 0.
*/
- public void applyMotionPrediction() {
+ public void applyMotionPrediction()
+ {
if (!useMotionPredictionCheckBox.isSelected())
return;
motion_prediction_state = true;
// record and motion prediction.
- for (final Mouse mouse : mouseList) {
- for (final Body body : mouse.bodyList) {
+ for (final Mouse mouse : mouseList)
+ {
+ for (final Body body : mouse.bodyList)
+ {
// record current position.
final EnergyInfo eInfo = (EnergyInfo) body.getUserData();
// copy the object.
- final ROVector2f vCopy = new Vector2f(body.getLastPosition()
- .getX(), body.getLastPosition().getY());
+ final ROVector2f vCopy = new Vector2f(body.getLastPosition().getX(), body.getLastPosition().getY());
body.setForce(0, 0);
@@ -977,32 +983,35 @@ public class PhyMouse implements ActionListener, ChangeListener {
{
final Vector2f newVelocity = new Vector2f(
- 10f * (eInfo.previousPositionList.get(1).getX() - eInfo.previousPositionList
- .get(0).getX()),
- 10f * (eInfo.previousPositionList.get(1).getY() - eInfo.previousPositionList
- .get(0).getY()));
+ 10f * (eInfo.previousPositionList.get(1).getX() - eInfo.previousPositionList.get(0).getX()),
+ 10f * (eInfo.previousPositionList.get(1).getY()
+ - eInfo.previousPositionList.get(0).getY()));
body.adjustVelocity(newVelocity);
- eInfo.previousPositionList
- .remove(eInfo.previousPositionList.get(0));
+ eInfo.previousPositionList.remove(eInfo.previousPositionList.get(0));
}
}
}
- for (int i = 0; i < 6; i++) {
- while (pauseTrackAllBox.isSelected()) {
- try {
+ for (int i = 0; i < 6; i++)
+ {
+ while (pauseTrackAllBox.isSelected())
+ {
+ try
+ {
Thread.sleep(100);
}
- catch (final InterruptedException e) {
+ catch (final InterruptedException e)
+ {
e.printStackTrace();
}
}
world.step();
- if (displayStepBox.isSelected()) {
+ if (displayStepBox.isSelected())
+ {
// sequence.refreshPainter();
// try {
// Thread.sleep( 200 );
@@ -1022,44 +1031,45 @@ public class PhyMouse implements ActionListener, ChangeListener {
}
- for (final Body body : bodyList) {
+ for (final Body body : bodyList)
+ {
body.adjustVelocity(new Vector2f(0, 0));
}
}
- public SlideJoint generateSlideJoint(Body bodyA, Body bodyB, float min,
- float max) {
- final SlideJoint slideJoint = new SlideJoint(bodyA, bodyB,
- new Vector2f(0, 0), new Vector2f(0, 0f), min, max, 0);
+ public SlideJoint generateSlideJoint(Body bodyA, Body bodyB, float min, float max)
+ {
+ final SlideJoint slideJoint = new SlideJoint(bodyA, bodyB, new Vector2f(0, 0), new Vector2f(0, 0f), min, max,
+ 0);
slideJointList.add(slideJoint);
world.add(slideJoint);
return slideJoint;
}
- public DistanceJoint generateDistanceJoint(Body bodyA, Body bodyB) {
- final Point2D pointA = new Point2D.Float(
- bodyA.getLastPosition().getX(), bodyA.getLastPosition().getY());
- final Point2D pointB = new Point2D.Float(
- bodyB.getLastPosition().getX(), bodyB.getLastPosition().getY());
+ public DistanceJoint generateDistanceJoint(Body bodyA, Body bodyB)
+ {
+ final Point2D pointA = new Point2D.Float(bodyA.getLastPosition().getX(), bodyA.getLastPosition().getY());
+ final Point2D pointB = new Point2D.Float(bodyB.getLastPosition().getX(), bodyB.getLastPosition().getY());
final float distance = (float) pointA.distance(pointB);
- final DistanceJoint distanceJoint = new DistanceJoint(bodyA, bodyB,
- new Vector2f(0, 0), new Vector2f(0, 0), distance);
+ final DistanceJoint distanceJoint = new DistanceJoint(bodyA, bodyB, new Vector2f(0, 0), new Vector2f(0, 0),
+ distance);
distanceJointList.add(distanceJoint);
world.add(distanceJoint);
return distanceJoint;
}
- public DistanceJoint generateDistanceJoint(Body bodyA, Body bodyB,
- float distance) {
- final DistanceJoint distanceJoint = new DistanceJoint(bodyA, bodyB,
- new Vector2f(0, 0), new Vector2f(0, 0), distance);
+ public DistanceJoint generateDistanceJoint(Body bodyA, Body bodyB, float distance)
+ {
+ final DistanceJoint distanceJoint = new DistanceJoint(bodyA, bodyB, new Vector2f(0, 0), new Vector2f(0, 0),
+ distance);
distanceJointList.add(distanceJoint);
world.add(distanceJoint);
return distanceJoint;
}
- public void paint(Graphics g, IcyCanvas canvas) {
+ public void paint(Graphics g, IcyCanvas canvas)
+ {
if (!(canvas instanceof IcyCanvas2D))
return;
final Graphics2D g2 = (Graphics2D) g.create();
@@ -1068,117 +1078,115 @@ public class PhyMouse implements ActionListener, ChangeListener {
// g2.setStroke( new BasicStroke((float) ROI2D.canvasToImageLogDeltaX(
// canvas, 5 ) ) );
- g2.setComposite(AlphaComposite.getInstance(AlphaComposite.SRC_OVER,
- 0.5f));
- if (displayBinaryMapCheckBox.isSelected()) {
+ g2.setComposite(AlphaComposite.getInstance(AlphaComposite.SRC_OVER, 0.5f));
- if (binaryMap != null)
+ try
+ {
+ if (displayBinaryMapCheckBox.isSelected() && (binaryMap != null))
g2.drawImage(binaryMap.convertToBufferedImage(null), null, 0, 0);
- }
-
- if (displayGradientMapCheckBox.isSelected()) {
- if (edgeMap != null)
+ if (displayGradientMapCheckBox.isSelected() && (edgeMap != null))
g2.drawImage(edgeMap.convertToBufferedImage(null), null, 0, 0);
}
+ catch (InterruptedException e)
+ {
+ // ignore
+ }
- g2.setComposite(AlphaComposite.getInstance(AlphaComposite.SRC_OVER,
- 1.0f));
+ g2.setComposite(AlphaComposite.getInstance(AlphaComposite.SRC_OVER, 1.0f));
// paint SlideJoint
- if (displaySlideJointCheckBox.isSelected()) {
+ if (displaySlideJointCheckBox.isSelected())
+ {
g2.setColor(Color.orange);
- for (final SlideJoint slideJoint : slideJointList) {
- final Line2D line = new Line2D.Float(slideJoint.getBody1()
- .getLastPosition().getX(), slideJoint.getBody1()
- .getLastPosition().getY(), slideJoint.getBody2()
- .getLastPosition().getX(), slideJoint.getBody2()
- .getLastPosition().getY());
+ for (final SlideJoint slideJoint : slideJointList)
+ {
+ final Line2D line = new Line2D.Float(slideJoint.getBody1().getLastPosition().getX(),
+ slideJoint.getBody1().getLastPosition().getY(), slideJoint.getBody2().getLastPosition().getX(),
+ slideJoint.getBody2().getLastPosition().getY());
g2.draw(line);
}
}
// paint DistanceJoint
- if (displayDistanceJointCheckBox.isSelected()) {
+ if (displayDistanceJointCheckBox.isSelected())
+ {
g2.setColor(Color.YELLOW);
- for (final DistanceJoint distanceJoint : distanceJointList) {
- final Line2D line = new Line2D.Float(distanceJoint.getBody1()
- .getLastPosition().getX(), distanceJoint.getBody1()
- .getLastPosition().getY(), distanceJoint.getBody2()
- .getLastPosition().getX(), distanceJoint.getBody2()
- .getLastPosition().getY());
+ for (final DistanceJoint distanceJoint : distanceJointList)
+ {
+ final Line2D line = new Line2D.Float(distanceJoint.getBody1().getLastPosition().getX(),
+ distanceJoint.getBody1().getLastPosition().getY(),
+ distanceJoint.getBody2().getLastPosition().getX(),
+ distanceJoint.getBody2().getLastPosition().getY());
g2.draw(line);
}
}
// paint Bodie's center
- if (displayBodyCenterCheckBox.isSelected()) {
+ if (displayBodyCenterCheckBox.isSelected())
+ {
g2.setColor(Color.blue);
- for (final Body body : bodyList) {
- final Ellipse2D ellipse = new Ellipse2D.Float(body
- .getLastPosition().getX() - 1.5f, body
- .getLastPosition().getY() - 1.5f, 3, 3);
+ for (final Body body : bodyList)
+ {
+ final Ellipse2D ellipse = new Ellipse2D.Float(body.getLastPosition().getX() - 1.5f,
+ body.getLastPosition().getY() - 1.5f, 3, 3);
g2.draw(ellipse);
}
}
// paint Bodie's shape ( if any )
- if (displayBodyShapeCheckBox.isSelected()) {
+ if (displayBodyShapeCheckBox.isSelected())
+ {
g2.setColor(Color.white);
- for (final Body body : bodyList) {
+ for (final Body body : bodyList)
+ {
final Shape shape = body.getShape();
if (shape != null)
- if (shape instanceof Polygon) {
- final ROVector2f[] vert = ((Polygon) shape)
- .getVertices();
+ if (shape instanceof Polygon)
+ {
+ final ROVector2f[] vert = ((Polygon) shape).getVertices();
// if ( vert != null )
- for (int i = 0; i < vert.length - 1; i++) {
+ for (int i = 0; i < vert.length - 1; i++)
+ {
final AffineTransform transform = g2.getTransform();
- g2.translate(body.getLastPosition().getX(), body
- .getLastPosition().getY());
+ g2.translate(body.getLastPosition().getX(), body.getLastPosition().getY());
g2.rotate(body.getRotation());
- final Line2D line2D = new Line2D.Float(
- vert[i].getX(), vert[i].getY(),
- vert[i + 1].getX(), vert[i + 1].getY());
+ final Line2D line2D = new Line2D.Float(vert[i].getX(), vert[i].getY(), vert[i + 1].getX(),
+ vert[i + 1].getY());
g2.draw(line2D);
g2.setTransform(transform);
}
final AffineTransform transform = g2.getTransform();
- g2.translate(body.getLastPosition().getX(), body
- .getLastPosition().getY());
+ g2.translate(body.getLastPosition().getX(), body.getLastPosition().getY());
g2.rotate(body.getRotation());
- final Line2D line2D = new Line2D.Float(vert[0].getX(),
- vert[0].getY(), vert[vert.length - 1].getX(),
- vert[vert.length - 1].getY());
+ final Line2D line2D = new Line2D.Float(vert[0].getX(), vert[0].getY(),
+ vert[vert.length - 1].getX(), vert[vert.length - 1].getY());
g2.draw(line2D);
g2.setTransform(transform);
}
- if (shape instanceof Box) {
+ if (shape instanceof Box)
+ {
final Box maBox = (Box) shape;
final AffineTransform transform = g2.getTransform();
- g2.translate(body.getLastPosition().getX(), body
- .getLastPosition().getY());
+ g2.translate(body.getLastPosition().getX(), body.getLastPosition().getY());
g2.rotate(body.getRotation());
- final Rectangle2D rect2D = new Rectangle2D.Float(-maBox
- .getSize().getX() / 2f,
- -maBox.getSize().getY() / 2f, maBox.getSize()
- .getX(), maBox.getSize().getY());
+ final Rectangle2D rect2D = new Rectangle2D.Float(-maBox.getSize().getX() / 2f,
+ -maBox.getSize().getY() / 2f, maBox.getSize().getX(), maBox.getSize().getY());
g2.draw(rect2D);
g2.setTransform(transform);
}
- if (shape instanceof Circle) {
+ if (shape instanceof Circle)
+ {
final Circle maCircle = (Circle) shape;
final AffineTransform transform = g2.getTransform();
- g2.translate(body.getLastPosition().getX(), body
- .getLastPosition().getY());
+ g2.translate(body.getLastPosition().getX(), body.getLastPosition().getY());
g2.rotate(body.getRotation());
- final Ellipse2D ellipse2D = new Ellipse2D.Double(
- -maCircle.getRadius(), -maCircle.getRadius(),
+ final Ellipse2D ellipse2D = new Ellipse2D.Double(-maCircle.getRadius(), -maCircle.getRadius(),
maCircle.getRadius() * 2, maCircle.getRadius() * 2);
g2.draw(ellipse2D);
@@ -1190,7 +1198,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
// paint Energy area
{
- for (final Body body : bodyList) {
+ for (final Body body : bodyList)
+ {
g2.setStroke(new BasicStroke(0.5f));
final EnergyInfo energyInfo = (EnergyInfo) body.getUserData();
Color color = Color.black;
@@ -1203,35 +1212,34 @@ public class PhyMouse implements ActionListener, ChangeListener {
g2.setColor(color);
if (displayEnergyAreaCheckBox.isSelected())
- if (energyInfo.energyMap != EnergyMap.NO_ENERGY) {
- final Ellipse2D ellipse = new Ellipse2D.Float(body
- .getLastPosition().getX() - energyInfo.ray,
- body.getLastPosition().getY() - energyInfo.ray,
- energyInfo.ray * 2 + 1, energyInfo.ray * 2 + 1);
+ if (energyInfo.energyMap != EnergyMap.NO_ENERGY)
+ {
+ final Ellipse2D ellipse = new Ellipse2D.Float(body.getLastPosition().getX() - energyInfo.ray,
+ body.getLastPosition().getY() - energyInfo.ray, energyInfo.ray * 2 + 1,
+ energyInfo.ray * 2 + 1);
g2.draw(ellipse);
}
boolean displayForce = displayForceCheckBox.isSelected();
- if (displayBinaryMapCheckBox.isSelected()
- && energyInfo.energyMap != EnergyMap.BINARY_MOUSE)
+ if (displayBinaryMapCheckBox.isSelected() && energyInfo.energyMap != EnergyMap.BINARY_MOUSE)
displayForce = false;
- if (displayGradientMapCheckBox.isSelected()
- && energyInfo.energyMap != EnergyMap.GRADIENT_MAP)
+ if (displayGradientMapCheckBox.isSelected() && energyInfo.energyMap != EnergyMap.GRADIENT_MAP)
displayForce = false;
- if (displayForce) {
- final Line2D energyVector = new Line2D.Float(body
- .getLastPosition().getX(), body.getLastPosition()
- .getY(), body.getLastPosition().getX()
- + energyInfo.vx, body.getLastPosition().getY()
- + energyInfo.vy);
+ if (displayForce)
+ {
+ final Line2D energyVector = new Line2D.Float(body.getLastPosition().getX(),
+ body.getLastPosition().getY(), body.getLastPosition().getX() + energyInfo.vx,
+ body.getLastPosition().getY() + energyInfo.vy);
g2.draw(energyVector);
}
}
}
- if (displayGlobalSplineCheckBox.isSelected()) {
+ if (displayGlobalSplineCheckBox.isSelected())
+ {
g2.setColor(Color.blue);
- for (final Mouse mouse : mouseList) {
+ for (final Mouse mouse : mouseList)
+ {
// if ( mouse.tommyBody != null )
// {
// g2.drawString( ""+ (mouseList.indexOf( mouse ) + 1),
@@ -1295,21 +1303,23 @@ public class PhyMouse implements ActionListener, ChangeListener {
g2.setColor(Color.blue);
- if (motion_prediction_state) {
+ if (motion_prediction_state)
+ {
g2.setColor(Color.white);
g2.drawString("Motion prediction (movie slowed)", 20, 200);
}
g2.setColor(Color.white);
- //g2.drawString("world E: " + world.getTotalEnergy(), 20, 220);
+ // g2.drawString("world E: " + world.getTotalEnergy(), 20, 220);
// affichage au temps t (passe egalement) de mouseA et mouseB
// Mouse A
- if (displayMemoryCheckBox.isSelected()) {
+ if (displayMemoryCheckBox.isSelected())
+ {
{
- final MouseInfoRecord mouseAInfo = mouseARecord
- .get(currentFrame);
- if (mouseAInfo != null) {
+ final MouseInfoRecord mouseAInfo = mouseARecord.get(currentFrame);
+ if (mouseAInfo != null)
+ {
g2.setColor(Color.red);
// g2.drawOval((int) mouseAInfo.headPosition.getX() - 5,
// (int) mouseAInfo.headPosition.getY() - 5, 10, 10);
@@ -1319,20 +1329,14 @@ public class PhyMouse implements ActionListener, ChangeListener {
// g2.drawOval((int) mouseAInfo.tailPosition.getX() - 2,
// (int) mouseAInfo.tailPosition.getY() - 2, 4, 4);
- Ellipse2D ellipseHead = new Ellipse2D.Double(
- mouseAInfo.headPosition.getX() - 22 * SCALE,
- mouseAInfo.headPosition.getY() - 22 * SCALE,
- 45 * SCALE, 45 * SCALE);
+ Ellipse2D ellipseHead = new Ellipse2D.Double(mouseAInfo.headPosition.getX() - 22 * SCALE,
+ mouseAInfo.headPosition.getY() - 22 * SCALE, 45 * SCALE, 45 * SCALE);
- Ellipse2D ellipseBody = new Ellipse2D.Double(
- (mouseAInfo.bodyPosition.getX() - 45 * SCALE),
- (mouseAInfo.bodyPosition.getY() - 45 * SCALE),
- (90 * SCALE), (90 * SCALE));
+ Ellipse2D ellipseBody = new Ellipse2D.Double((mouseAInfo.bodyPosition.getX() - 45 * SCALE),
+ (mouseAInfo.bodyPosition.getY() - 45 * SCALE), (90 * SCALE), (90 * SCALE));
- Ellipse2D ellipseTail = new Ellipse2D.Double(
- (mouseAInfo.tailPosition.getX() - 10 * SCALE),
- (mouseAInfo.tailPosition.getY() - 10 * SCALE),
- (20 * SCALE), (20 * SCALE));
+ Ellipse2D ellipseTail = new Ellipse2D.Double((mouseAInfo.tailPosition.getX() - 10 * SCALE),
+ (mouseAInfo.tailPosition.getY() - 10 * SCALE), (20 * SCALE), (20 * SCALE));
g2.draw(ellipseHead);
g2.draw(ellipseBody);
@@ -1360,9 +1364,9 @@ public class PhyMouse implements ActionListener, ChangeListener {
}
// Mouse B
{
- final MouseInfoRecord mouseBInfo = mouseBRecord
- .get(currentFrame);
- if (mouseBInfo != null) {
+ final MouseInfoRecord mouseBInfo = mouseBRecord.get(currentFrame);
+ if (mouseBInfo != null)
+ {
g2.setColor(Color.green);
// g2.drawOval(
// (int) mouseBInfo.headPosition.getX() - 5, (int)
@@ -1375,20 +1379,14 @@ public class PhyMouse implements ActionListener, ChangeListener {
// mouseBInfo.tailPosition.getY() - 2, 4, 4
// );
- Ellipse2D ellipseHead = new Ellipse2D.Double(
- (mouseBInfo.headPosition.getX() - 22 * SCALE),
- (mouseBInfo.headPosition.getY() - 22 * SCALE),
- (45 * SCALE), (45 * SCALE));
+ Ellipse2D ellipseHead = new Ellipse2D.Double((mouseBInfo.headPosition.getX() - 22 * SCALE),
+ (mouseBInfo.headPosition.getY() - 22 * SCALE), (45 * SCALE), (45 * SCALE));
- Ellipse2D ellipseBody = new Ellipse2D.Double(
- (mouseBInfo.bodyPosition.getX() - 45 * SCALE),
- (mouseBInfo.bodyPosition.getY() - 45 * SCALE),
- (90 * SCALE), (90 * SCALE));
+ Ellipse2D ellipseBody = new Ellipse2D.Double((mouseBInfo.bodyPosition.getX() - 45 * SCALE),
+ (mouseBInfo.bodyPosition.getY() - 45 * SCALE), (90 * SCALE), (90 * SCALE));
- Ellipse2D ellipseTail = new Ellipse2D.Double(
- (mouseBInfo.tailPosition.getX() - 10 * SCALE),
- (mouseBInfo.tailPosition.getY() - 10 * SCALE),
- (20 * SCALE), (20 * SCALE));
+ Ellipse2D ellipseTail = new Ellipse2D.Double((mouseBInfo.tailPosition.getX() - 10 * SCALE),
+ (mouseBInfo.tailPosition.getY() - 10 * SCALE), (20 * SCALE), (20 * SCALE));
g2.draw(ellipseHead);
g2.draw(ellipseBody);
@@ -1417,7 +1415,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
}
if (false)
- if (displayMemoryCheckBox.isSelected()) {
+ if (displayMemoryCheckBox.isSelected())
+ {
g2.setColor(Color.white);
// g2.fillRect( 0 , 0 , sequence.getWidth() ,
@@ -1426,50 +1425,43 @@ public class PhyMouse implements ActionListener, ChangeListener {
// for ( int t = 0 ; t < sequence.getLength() ; t++ )
{
- final ArrayList<Body> bodyCurrentList = bodyHash
- .get(currentFrame);
+ final ArrayList<Body> bodyCurrentList = bodyHash.get(currentFrame);
// ArrayList<Body> bodyCurrentList = bodyHash.get( t );
if (bodyCurrentList != null)
- for (final Body body : bodyCurrentList) {
- final EnergyInfo e = (EnergyInfo) body
- .getUserData();
- if (mouseList.get(0) == e.mouse) {
+ for (final Body body : bodyCurrentList)
+ {
+ final EnergyInfo e = (EnergyInfo) body.getUserData();
+ if (mouseList.get(0) == e.mouse)
+ {
g2.setColor(Color.red);
}
- else {
+ else
+ {
g2.setColor(Color.green);
}
final Shape shape = body.getShape();
- if (shape instanceof Box) {
+ if (shape instanceof Box)
+ {
final Box maBox = (Box) shape;
- final AffineTransform transform = g2
- .getTransform();
- g2.translate(body.getLastPosition().getX(),
- body.getLastPosition().getY());
+ final AffineTransform transform = g2.getTransform();
+ g2.translate(body.getLastPosition().getX(), body.getLastPosition().getY());
g2.rotate(body.getRotation());
- final Rectangle2D rect2D = new Rectangle2D.Float(
- -maBox.getSize().getX() / 2f, -maBox
- .getSize().getY() / 2f, maBox
- .getSize().getX(), maBox
- .getSize().getY());
+ final Rectangle2D rect2D = new Rectangle2D.Float(-maBox.getSize().getX() / 2f,
+ -maBox.getSize().getY() / 2f, maBox.getSize().getX(), maBox.getSize().getY());
g2.draw(rect2D);
g2.setTransform(transform);
}
- if (shape instanceof Circle) {
+ if (shape instanceof Circle)
+ {
final Circle maCircle = (Circle) shape;
- final AffineTransform transform = g2
- .getTransform();
- g2.translate(body.getLastPosition().getX(),
- body.getLastPosition().getY());
+ final AffineTransform transform = g2.getTransform();
+ g2.translate(body.getLastPosition().getX(), body.getLastPosition().getY());
g2.rotate(body.getRotation());
- final Ellipse2D ellipse2D = new Ellipse2D.Double(
- -maCircle.getRadius(),
- -maCircle.getRadius(),
- maCircle.getRadius() * 2,
- maCircle.getRadius() * 2);
+ final Ellipse2D ellipse2D = new Ellipse2D.Double(-maCircle.getRadius(),
+ -maCircle.getRadius(), maCircle.getRadius() * 2, maCircle.getRadius() * 2);
g2.draw(ellipse2D);
g2.setTransform(transform);
@@ -1481,27 +1473,32 @@ public class PhyMouse implements ActionListener, ChangeListener {
}
- public ArrayList<Body> getBodyList() {
+ public ArrayList<Body> getBodyList()
+ {
return bodyList;
}
- public JPanel getPanel() {
+ public JPanel getPanel()
+ {
return panel;
}
- public double convertScaleX(double x) {
+ public double convertScaleX(double x)
+ {
x = x - 150;
x *= (35. / 100.);
return x;
}
- public double convertScaleY(double y) {
+ public double convertScaleY(double y)
+ {
y = y - 50;
y *= (50. / 200.);
return y;
}
- public void writeXMLResult() {
+ public void writeXMLResult()
+ {
// Should save
// head position
// tommy position
@@ -1509,45 +1506,46 @@ public class PhyMouse implements ActionListener, ChangeListener {
System.out.println();
System.out.println("Body Mouse X 1:");
- for (int i = 0; i < sequence.getLength(); i++) {
+ for (int i = 0; i < sequence.getLength(); i++)
+ {
final MouseView mouseView = mouse1view.get(i);
- System.out.print(convertScaleX(mouseView.bodyPosition.getX())
- + ", ");
+ System.out.print(convertScaleX(mouseView.bodyPosition.getX()) + ", ");
if (i % 10 == 0)
System.out.println();
}
System.out.println();
System.out.println("Body Mouse Y 1:");
- for (int i = 0; i < sequence.getLength(); i++) {
+ for (int i = 0; i < sequence.getLength(); i++)
+ {
final MouseView mouseView = mouse1view.get(i);
- System.out.print(convertScaleY(mouseView.bodyPosition.getY())
- + ", ");
+ System.out.print(convertScaleY(mouseView.bodyPosition.getY()) + ", ");
if (i % 10 == 0)
System.out.println();
}
System.out.println();
System.out.println("head Mouse X 1:");
- for (int i = 0; i < sequence.getLength(); i++) {
+ for (int i = 0; i < sequence.getLength(); i++)
+ {
final MouseView mouseView = mouse1view.get(i);
- System.out.print(convertScaleX(mouseView.headPosition.getX())
- + ", ");
+ System.out.print(convertScaleX(mouseView.headPosition.getX()) + ", ");
if (i % 10 == 0)
System.out.println();
}
System.out.println();
System.out.println("head Mouse Y 1:");
- for (int i = 0; i < sequence.getLength(); i++) {
+ for (int i = 0; i < sequence.getLength(); i++)
+ {
final MouseView mouseView = mouse1view.get(i);
- System.out.print(convertScaleY(mouseView.headPosition.getY())
- + ", ");
+ System.out.print(convertScaleY(mouseView.headPosition.getY()) + ", ");
if (i % 10 == 0)
System.out.println();
}
System.out.println();
System.out.println("Head Mouse Angle 1:");
- for (int i = 0; i < sequence.getLength(); i++) {
+ for (int i = 0; i < sequence.getLength(); i++)
+ {
final MouseView mouseView = mouse1view.get(i);
System.out.print((int) (180 * mouseView.headAngle / 3.14f) + ", ");
if (i % 10 == 0)
@@ -1558,45 +1556,46 @@ public class PhyMouse implements ActionListener, ChangeListener {
System.out.println();
System.out.println("Body Mouse X 2:");
- for (int i = 0; i < sequence.getLength(); i++) {
+ for (int i = 0; i < sequence.getLength(); i++)
+ {
final MouseView mouseView = mouse2view.get(i);
- System.out.print(convertScaleX(mouseView.bodyPosition.getX())
- + ", ");
+ System.out.print(convertScaleX(mouseView.bodyPosition.getX()) + ", ");
if (i % 10 == 0)
System.out.println();
}
System.out.println();
System.out.println("Body Mouse Y 2:");
- for (int i = 0; i < sequence.getLength(); i++) {
+ for (int i = 0; i < sequence.getLength(); i++)
+ {
final MouseView mouseView = mouse2view.get(i);
- System.out.print(convertScaleY(mouseView.bodyPosition.getY())
- + ", ");
+ System.out.print(convertScaleY(mouseView.bodyPosition.getY()) + ", ");
if (i % 10 == 0)
System.out.println();
}
System.out.println();
System.out.println("head Mouse X 1:");
- for (int i = 0; i < sequence.getLength(); i++) {
+ for (int i = 0; i < sequence.getLength(); i++)
+ {
final MouseView mouseView = mouse2view.get(i);
- System.out.print(convertScaleX(mouseView.headPosition.getX())
- + ", ");
+ System.out.print(convertScaleX(mouseView.headPosition.getX()) + ", ");
if (i % 10 == 0)
System.out.println();
}
System.out.println();
System.out.println("head Mouse Y 1:");
- for (int i = 0; i < sequence.getLength(); i++) {
+ for (int i = 0; i < sequence.getLength(); i++)
+ {
final MouseView mouseView = mouse2view.get(i);
- System.out.print(convertScaleY(mouseView.headPosition.getY())
- + ", ");
+ System.out.print(convertScaleY(mouseView.headPosition.getY()) + ", ");
if (i % 10 == 0)
System.out.println();
}
System.out.println();
System.out.println("Head Mouse Angle 2:");
- for (int i = 0; i < sequence.getLength(); i++) {
+ for (int i = 0; i < sequence.getLength(); i++)
+ {
final MouseView mouseView = mouse2view.get(i);
System.out.print((int) (180 * mouseView.headAngle / 3.14f) + ", ");
if (i % 10 == 0)
@@ -1605,7 +1604,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
}
- class Scale implements Painter {
+ class Scale implements Painter
+ {
String name;
int height;
int width;
@@ -1614,7 +1614,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
float barycenterY[];
int scale;
- public Scale(int width, int height, int scale) {
+ public Scale(int width, int height, int scale)
+ {
this.scale = scale;
this.width = width;
this.height = height;
@@ -1623,56 +1624,61 @@ public class PhyMouse implements ActionListener, ChangeListener {
barycenterY = new float[width * height];
}
- float getScaleFactor() {
+ float getScaleFactor()
+ {
float scaleFactor = 1;
- for (int i = 0; i < scale; i++) {
+ for (int i = 0; i < scale; i++)
+ {
scaleFactor *= 2;
}
return (float) scaleFactor;
}
- void sendToDisplay() {
+ void sendToDisplay()
+ {
final IcyBufferedImage image = new IcyBufferedImage(width, height, 1, DataBuffer.TYPE_FLOAT);
final float[] data = image.getDataXYAsFloat(0);
- for (int i = 0; i < value.length; i++) {
+ for (int i = 0; i < value.length; i++)
+ {
data[i] = value[i];
}
final Sequence sequence = new Sequence(image);
- sequence.setName("Scale " + scale + " resol div par "
- + getScaleFactor());
+ sequence.setName("Scale " + scale + " resol div par " + getScaleFactor());
sequence.addPainter(this);
Icy.addSequence(sequence);
}
@Override
- public void keyPressed(KeyEvent e, Point2D imagePoint, IcyCanvas canvas) {
+ public void keyPressed(KeyEvent e, Point2D imagePoint, IcyCanvas canvas)
+ {
}
@Override
- public void mouseClick(MouseEvent e, Point2D p, IcyCanvas canvas) {
+ public void mouseClick(MouseEvent e, Point2D p, IcyCanvas canvas)
+ {
final int x = (int) p.getX();
final int y = (int) p.getY();
- System.out
- .println("Point : x:" + x + " y:" + y + " bx:"
- + barycenterX[x + y * width] + " by:"
- + barycenterY[x + y * width] + " v:"
- + value[x + y * width]);
+ System.out.println("Point : x:" + x + " y:" + y + " bx:" + barycenterX[x + y * width] + " by:"
+ + barycenterY[x + y * width] + " v:" + value[x + y * width]);
}
@Override
- public void mouseDrag(MouseEvent e, Point2D p, IcyCanvas canvas) {
+ public void mouseDrag(MouseEvent e, Point2D p, IcyCanvas canvas)
+ {
}
@Override
- public void mouseMove(MouseEvent e, Point2D p, IcyCanvas canvas) {
+ public void mouseMove(MouseEvent e, Point2D p, IcyCanvas canvas)
+ {
}
@Override
- public void paint(Graphics2D g, Sequence sequence, IcyCanvas canvas) {
+ public void paint(Graphics2D g, Sequence sequence, IcyCanvas canvas)
+ {
g.setStroke(new BasicStroke(0.1f));
final Line2D line = new Line2D.Float();
g.setColor(Color.red);
@@ -1682,19 +1688,17 @@ public class PhyMouse implements ActionListener, ChangeListener {
final float scaleDivider = getScaleFactor();
for (int x = 0; x < width; x += 1)
- for (int y = 0; y < height; y += 1) {
- final float xx = barycenterX[x + y * width]
- / (float) scaleDivider;
- final float yy = barycenterY[x + y * width]
- / (float) scaleDivider;
+ for (int y = 0; y < height; y += 1)
+ {
+ final float xx = barycenterX[x + y * width] / (float) scaleDivider;
+ final float yy = barycenterY[x + y * width] / (float) scaleDivider;
- if ((value[x + y * width] != 0)) {
+ if ((value[x + y * width] != 0))
+ {
g.setColor(Color.yellow);
- line.setLine(0.5 + x + 0.25, 0.5 + y + 0.25,
- 0.5 + x - 0.25, 0.5 + y - 0.25);
+ line.setLine(0.5 + x + 0.25, 0.5 + y + 0.25, 0.5 + x - 0.25, 0.5 + y - 0.25);
g.draw(line);
- line.setLine(0.5 + x + 0.25, 0.5 + y - 0.25,
- 0.5 + x - 0.25, 0.5 + y + 0.25);
+ line.setLine(0.5 + x + 0.25, 0.5 + y - 0.25, 0.5 + x - 0.25, 0.5 + y + 0.25);
g.draw(line);
g.setColor(Color.red);
@@ -1703,7 +1707,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
g.draw(line);
}
- else {
+ else
+ {
}
@@ -1712,25 +1717,27 @@ public class PhyMouse implements ActionListener, ChangeListener {
}
@Override
- public void keyReleased(KeyEvent e, Point2D imagePoint, IcyCanvas canvas) {
+ public void keyReleased(KeyEvent e, Point2D imagePoint, IcyCanvas canvas)
+ {
}
@Override
- public void mousePressed(MouseEvent e, Point2D imagePoint,
- IcyCanvas canvas) {
+ public void mousePressed(MouseEvent e, Point2D imagePoint, IcyCanvas canvas)
+ {
}
@Override
- public void mouseReleased(MouseEvent e, Point2D imagePoint,
- IcyCanvas canvas) {
+ public void mouseReleased(MouseEvent e, Point2D imagePoint, IcyCanvas canvas)
+ {
}
}
- class Ancre2 implements Painter {
+ class Ancre2 implements Painter
+ {
int mapWidth = 0;
int mapHeight = 0;
@@ -1744,8 +1751,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
int maxY;
ArrayList<Rectangle2D> listRect = new ArrayList<Rectangle2D>();
- public Ancre2(int mapWidth, int mapHeight, float centerX,
- float centerY, float ray) {
+ public Ancre2(int mapWidth, int mapHeight, float centerX, float centerY, float ray)
+ {
this.mapWidth = mapWidth;
this.mapHeight = mapHeight;
this.centerX = centerX;
@@ -1757,18 +1764,18 @@ public class PhyMouse implements ActionListener, ChangeListener {
minY = (int) (centerY - ray);
maxY = (int) (centerY + ray);
- carteAncre = new IcyBufferedImage(mapWidth, mapHeight, 1,
- DataBuffer.TYPE_BYTE);
+ carteAncre = new IcyBufferedImage(mapWidth, mapHeight, 1, DataBuffer.TYPE_BYTE);
// construction de la carte encre.
final byte[] data = carteAncre.getDataXYAsByte(0);
for (int x = minX; x < maxX; x++)
- for (int y = minY; y < maxY; y++) {
+ for (int y = minY; y < maxY; y++)
+ {
- final float dis = (x - centerX) * (x - centerX)
- + (y - centerY) * (y - centerY);
- if (dis < ray * ray) {
+ final float dis = (x - centerX) * (x - centerX) + (y - centerY) * (y - centerY);
+ if (dis < ray * ray)
+ {
data[x + y * mapWidth] = (byte) 255;
}
@@ -1778,7 +1785,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
Sequence sequence;
- public void displayAsSequence() {
+ public void displayAsSequence()
+ {
sequence = new Sequence(carteAncre);
sequence.setName("Map Ancre");
@@ -1787,73 +1795,82 @@ public class PhyMouse implements ActionListener, ChangeListener {
}
- public void refreshDisplay() {
+ public void refreshDisplay()
+ {
sequence.painterChanged(null);
}
@Override
- public void keyPressed(KeyEvent e, Point2D imagePoint, IcyCanvas canvas) {
+ public void keyPressed(KeyEvent e, Point2D imagePoint, IcyCanvas canvas)
+ {
}
@Override
- public void mouseClick(MouseEvent e, Point2D p, IcyCanvas canvas) {
+ public void mouseClick(MouseEvent e, Point2D p, IcyCanvas canvas)
+ {
}
@Override
- public void mouseDrag(MouseEvent e, Point2D p, IcyCanvas canvas) {
+ public void mouseDrag(MouseEvent e, Point2D p, IcyCanvas canvas)
+ {
}
@Override
- public void mouseMove(MouseEvent e, Point2D p, IcyCanvas canvas) {
+ public void mouseMove(MouseEvent e, Point2D p, IcyCanvas canvas)
+ {
}
@Override
- public void paint(Graphics2D g, Sequence sequence, IcyCanvas canvas) {
+ public void paint(Graphics2D g, Sequence sequence, IcyCanvas canvas)
+ {
g.setStroke(new BasicStroke(1f));
- g.setColor(new Color((float) Math.random(), (float) Math.random(),
- (float) Math.random(), (float) 0.5f));
- for (final Rectangle2D rect : listRect) {
+ g.setColor(new Color((float) Math.random(), (float) Math.random(), (float) Math.random(), (float) 0.5f));
+ for (final Rectangle2D rect : listRect)
+ {
g.draw(rect);
}
}
Color color = Color.yellow;
- public void setColor(Color color) {
+ public void setColor(Color color)
+ {
this.color = color;
}
@Override
- public void keyReleased(KeyEvent e, Point2D imagePoint, IcyCanvas canvas) {
+ public void keyReleased(KeyEvent e, Point2D imagePoint, IcyCanvas canvas)
+ {
}
@Override
- public void mousePressed(MouseEvent e, Point2D imagePoint,
- IcyCanvas canvas) {
+ public void mousePressed(MouseEvent e, Point2D imagePoint, IcyCanvas canvas)
+ {
}
@Override
- public void mouseReleased(MouseEvent e, Point2D imagePoint,
- IcyCanvas canvas) {
+ public void mouseReleased(MouseEvent e, Point2D imagePoint, IcyCanvas canvas)
+ {
}
}
- public void computeATestAnchorVectorMap(boolean DISPLAY, Ancre2 ancre) {
- final Sequence sequenceFocused = Icy.getMainInterface()
- .getFocusedSequence();
+ public void computeATestAnchorVectorMap(boolean DISPLAY, Ancre2 ancre)
+ {
+ final Sequence sequenceFocused = Icy.getMainInterface().getFocusedSequence();
// creation d'une ancre avec sa carte
final Ancre2 a1 = ancre;
- if (DISPLAY) {
+ if (DISPLAY)
+ {
a1.displayAsSequence();
sequenceFocused.addPainter(a1);
}
@@ -1868,12 +1885,12 @@ public class PhyMouse implements ActionListener, ChangeListener {
final byte[] dataCarte = sequenceFocused.getDataXYAsByte(0, 0, 0);
for (int x = a1.minX; x < a1.maxX; x++)
- for (int y = a1.minY; y < a1.maxY; y++) {
- if (dataAncre[x + y * a1.mapWidth] != 0) {
- final float vectX = (x - a1.centerX)
- * (dataCarte[x + y * a1.mapWidth] & 0xFF);
- final float vectY = (y - a1.centerY)
- * (dataCarte[x + y * a1.mapWidth] & 0xFF);
+ for (int y = a1.minY; y < a1.maxY; y++)
+ {
+ if (dataAncre[x + y * a1.mapWidth] != 0)
+ {
+ final float vectX = (x - a1.centerX) * (dataCarte[x + y * a1.mapWidth] & 0xFF);
+ final float vectY = (y - a1.centerY) * (dataCarte[x + y * a1.mapWidth] & 0xFF);
vx += vectX;
vy += vectY;
count++;
@@ -1881,8 +1898,7 @@ public class PhyMouse implements ActionListener, ChangeListener {
}
System.out.println("nb iteration simple : " + count);
- System.out.println("Calcul du vecteur via methode simple : vx = "
- + vx + " vy = " + vy);
+ System.out.println("Calcul du vecteur via methode simple : vx = " + vx + " vy = " + vy);
}
// calcul du vecteur moyen avec methode scale et quadtrees
@@ -1893,7 +1909,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
float vy = 0;
int count = 0;
- for (int scaleNumber = binaryScaleMap.size() - 1; scaleNumber >= 0; scaleNumber--) {
+ for (int scaleNumber = binaryScaleMap.size() - 1; scaleNumber >= 0; scaleNumber--)
+ {
// System.out.println("scale : " + scaleNumber);
// rajouter le clipping sur le parcours des map d'attraction en
// echelle sur la ROI.
@@ -1906,7 +1923,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
final int widthDataAncre = a1.carteAncre.getWidth();
for (int x = 0; x < scaleWidth; x++)
- for (int y = 0; y < scaleHeight; y++) {
+ for (int y = 0; y < scaleHeight; y++)
+ {
// first point to test:
final int p1x = x * scaleMulti;
final int p1y = y * scaleMulti;
@@ -1920,26 +1938,25 @@ public class PhyMouse implements ActionListener, ChangeListener {
&& (dataAncre[p2x + p2y * widthDataAncre] != 0) // bas
// droite
&& (dataAncre[p1x + p2y * widthDataAncre] != 0)
- && (dataAncre[p2x + p1y * widthDataAncre] != 0)) {
+ && (dataAncre[p2x + p1y * widthDataAncre] != 0))
+ {
// add a quad to watch
// System.out.print("x");
- a1.listRect.add(new Rectangle2D.Float(p1x, p1y, p2x
- - p1x + 1, p2y - p1y + 1));
+ a1.listRect.add(new Rectangle2D.Float(p1x, p1y, p2x - p1x + 1, p2y - p1y + 1));
// remove pixels from anchor
for (int xx = p1x; xx <= p2x; xx++)
- for (int yy = p1y; yy <= p2y; yy++) {
+ for (int yy = p1y; yy <= p2y; yy++)
+ {
dataAncre[xx + yy * widthDataAncre] = 0; // 0
}
// calcul du vecteur
- final float vectX = (currentScale.barycenterX[x + y
- * scaleWidth] - a1.centerX)
+ final float vectX = (currentScale.barycenterX[x + y * scaleWidth] - a1.centerX)
* currentScale.value[x + y * scaleWidth];
- final float vectY = (currentScale.barycenterY[x + y
- * scaleWidth] - a1.centerY)
+ final float vectY = (currentScale.barycenterY[x + y * scaleWidth] - a1.centerY)
* currentScale.value[x + y * scaleWidth];
vx += vectX;
vy += vectY;
@@ -1948,73 +1965,67 @@ public class PhyMouse implements ActionListener, ChangeListener {
}
}
- if (DISPLAY) {
+ if (DISPLAY)
+ {
a1.refreshDisplay();
}
}
System.out.println("nb iteration quad : " + count);
- System.out.println("Calcul du vecteur via methode quad : vx = "
- + vx + " vy = " + vy);
+ System.out.println("Calcul du vecteur via methode quad : vx = " + vx + " vy = " + vy);
}
}
- public void actionPerformed(ActionEvent e) {
+ public void actionPerformed(ActionEvent e)
+ {
- if ((e.getSource() == displayForceCheckBox)
- || (e.getSource() == displayEnergyAreaCheckBox)
- || (e.getSource() == displayBodyCenterCheckBox)
- || (e.getSource() == displayBodyShapeCheckBox)
- || (e.getSource() == displayGlobalSplineCheckBox)
- || (e.getSource() == displaySlideJointCheckBox)
- || (e.getSource() == displayBinaryMapCheckBox)
- || (e.getSource() == displayGradientMapCheckBox)) {
+ if ((e.getSource() == displayForceCheckBox) || (e.getSource() == displayEnergyAreaCheckBox)
+ || (e.getSource() == displayBodyCenterCheckBox) || (e.getSource() == displayBodyShapeCheckBox)
+ || (e.getSource() == displayGlobalSplineCheckBox) || (e.getSource() == displaySlideJointCheckBox)
+ || (e.getSource() == displayBinaryMapCheckBox) || (e.getSource() == displayGradientMapCheckBox))
+ {
sequence.painterChanged(null);
}
- if (e.getSource() == computeATestAnchorVectorMapButton) {
- final Sequence sequence = Icy.getMainInterface()
- .getFocusedSequence();
+ if (e.getSource() == computeATestAnchorVectorMapButton)
+ {
+ final Sequence sequence = Icy.getMainInterface().getFocusedSequence();
final ArrayList<Ancre2> ancreListOut = new ArrayList<Ancre2>();
final ArrayList<Ancre2> ancreListIn = new ArrayList<Ancre2>();
- final Ancre2 a1 = new Ancre2(Icy.getMainInterface()
- .getFocusedSequence().getWidth(), Icy.getMainInterface()
- .getFocusedSequence().getHeight(), 200, 160, 140 // ray =
- // 140.
+ final Ancre2 a1 = new Ancre2(Icy.getMainInterface().getFocusedSequence().getWidth(),
+ Icy.getMainInterface().getFocusedSequence().getHeight(), 200, 160, 140 // ray =
+ // 140.
);
a1.setColor(Color.yellow);
- final Ancre2 a2 = new Ancre2(Icy.getMainInterface()
- .getFocusedSequence().getWidth(), Icy.getMainInterface()
- .getFocusedSequence().getHeight(), 300, 160, 140 // ray =
- // 140.
+ final Ancre2 a2 = new Ancre2(Icy.getMainInterface().getFocusedSequence().getWidth(),
+ Icy.getMainInterface().getFocusedSequence().getHeight(), 300, 160, 140 // ray =
+ // 140.
);
a2.setColor(Color.orange);
- final Ancre2 a3 = new Ancre2(Icy.getMainInterface()
- .getFocusedSequence().getWidth(), Icy.getMainInterface()
- .getFocusedSequence().getHeight(), 250, 250, 100 // ray =
- // 140.
+ final Ancre2 a3 = new Ancre2(Icy.getMainInterface().getFocusedSequence().getWidth(),
+ Icy.getMainInterface().getFocusedSequence().getHeight(), 250, 250, 100 // ray =
+ // 140.
);
a3.setColor(Color.blue);
- final Ancre2 aConflict = new Ancre2(Icy.getMainInterface()
- .getFocusedSequence().getWidth(), Icy.getMainInterface()
- .getFocusedSequence().getHeight(), 250, 160, 140 // ray =
- // 140.
+ final Ancre2 aConflict = new Ancre2(Icy.getMainInterface().getFocusedSequence().getWidth(),
+ Icy.getMainInterface().getFocusedSequence().getHeight(), 250, 160, 140 // ray =
+ // 140.
);
aConflict.setColor(Color.pink);
- final byte[] aConflictdata = aConflict.carteAncre
- .getDataXYAsByte(0);
+ final byte[] aConflictdata = aConflict.carteAncre.getDataXYAsByte(0);
final byte[] a1data = a1.carteAncre.getDataXYAsByte(0);
final byte[] a2data = a2.carteAncre.getDataXYAsByte(0);
final byte[] a3data = a3.carteAncre.getDataXYAsByte(0);
- for (int i = 0; i < aConflictdata.length; i++) {
+ for (int i = 0; i < aConflictdata.length; i++)
+ {
aConflictdata[i] = 0;
if (a1data[i] != 0)
aConflictdata[i]++;
@@ -2029,13 +2040,16 @@ public class PhyMouse implements ActionListener, ChangeListener {
ancreListIn.add(a3);
// creation des zones ici nomme ancres
- for (final Ancre2 ancre : ancreListIn) {
+ for (final Ancre2 ancre : ancreListIn)
+ {
// cherche le max dans le masque de l ancre avec la map de
// conflit
int max = 0;
final byte[] mapAncre = ancre.carteAncre.getDataXYAsByte(0);
- for (int i = 0; i < aConflictdata.length; i++) {
- if (mapAncre[i] != 0) {
+ for (int i = 0; i < aConflictdata.length; i++)
+ {
+ if (mapAncre[i] != 0)
+ {
if (aConflictdata[i] > max)
max = aConflictdata[i];
}
@@ -2044,14 +2058,16 @@ public class PhyMouse implements ActionListener, ChangeListener {
System.out.println("max = " + max);
// creation des ancres pour chaque indice de conflit
- for (int cumulIndex = max; cumulIndex > 0; cumulIndex--) {
- final Ancre2 newAncre = new Ancre2(sequence.getWidth(),
- sequence.getHeight(), 10, 10, 0);
- final byte[] ancreData = newAncre.carteAncre
- .getDataXYAsByte(0);
- for (int i = 0; i < aConflictdata.length; i++) {
- if (mapAncre[i] == (byte) 255) {
- if (aConflictdata[i] == cumulIndex) {
+ for (int cumulIndex = max; cumulIndex > 0; cumulIndex--)
+ {
+ final Ancre2 newAncre = new Ancre2(sequence.getWidth(), sequence.getHeight(), 10, 10, 0);
+ final byte[] ancreData = newAncre.carteAncre.getDataXYAsByte(0);
+ for (int i = 0; i < aConflictdata.length; i++)
+ {
+ if (mapAncre[i] == (byte) 255)
+ {
+ if (aConflictdata[i] == cumulIndex)
+ {
ancreData[i] = (byte) 255;
}
}
@@ -2059,8 +2075,7 @@ public class PhyMouse implements ActionListener, ChangeListener {
}
System.out.println("computing.");
computeATestAnchorVectorMap(true, newAncre);
- newAncre.setColor(new Color((float) Math.random(),
- (float) Math.random(), (float) Math.random()));
+ newAncre.setColor(new Color((float) Math.random(), (float) Math.random(), (float) Math.random()));
sequence.addPainter(newAncre);
}
@@ -2071,7 +2086,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
// generaliser a toutes les carte binaire et gradient
- if (e.getSource() == displayScaleBinaryButton) {
+ if (e.getSource() == displayScaleBinaryButton)
+ {
binaryScaleMap = new ArrayList<Scale>();
binaryScaleMap.clear();
@@ -2080,23 +2096,21 @@ public class PhyMouse implements ActionListener, ChangeListener {
// Echelle 1 = copie originale de la carte binarized
- final Scale binaryScale0 = new Scale(Icy.getMainInterface()
- .getFocusedSequence().getWidth(), Icy.getMainInterface()
- .getFocusedSequence().getHeight(), 0);
+ final Scale binaryScale0 = new Scale(Icy.getMainInterface().getFocusedSequence().getWidth(),
+ Icy.getMainInterface().getFocusedSequence().getHeight(), 0);
- final byte[] dataIn = Icy.getMainInterface().getFocusedSequence()
- .getDataXYAsByte(0, 0, 0);
+ final byte[] dataIn = Icy.getMainInterface().getFocusedSequence().getDataXYAsByte(0, 0, 0);
final float[] dataOut = binaryScale0.value;
{
- final int maxWidth = Icy.getMainInterface()
- .getFocusedSequence().getWidth();
- final int maxHeight = Icy.getMainInterface()
- .getFocusedSequence().getHeight();
+ final int maxWidth = Icy.getMainInterface().getFocusedSequence().getWidth();
+ final int maxHeight = Icy.getMainInterface().getFocusedSequence().getHeight();
int offset = 0;
- for (int y = 0; y < maxHeight; y++) {
- for (int x = 0; x < maxWidth; x++) {
+ for (int y = 0; y < maxHeight; y++)
+ {
+ for (int x = 0; x < maxWidth; x++)
+ {
dataOut[offset] = dataIn[offset] & 0xFF;
@@ -2114,12 +2128,12 @@ public class PhyMouse implements ActionListener, ChangeListener {
final int MAX_SCALE_TO_BUILD = 9;
// construction des echelles version 2
- for (int scale = 1; scale < MAX_SCALE_TO_BUILD; scale++) {
+ for (int scale = 1; scale < MAX_SCALE_TO_BUILD; scale++)
+ {
final Scale previousScale = binaryScaleMap.get(scale - 1);
- final Scale currentScale = new Scale(previousScale.width / 2,
- previousScale.height / 2, scale);
+ final Scale currentScale = new Scale(previousScale.width / 2, previousScale.height / 2, scale);
final float[] in = previousScale.value;
final float[] out = currentScale.value;
@@ -2137,7 +2151,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
boolean LOG = false;
- if (x == 20 && y == 21 && scale == 2) {
+ if (x == 20 && y == 21 && scale == 2)
+ {
System.out.println("log true x: 20 y:21 s:2");
LOG = true;
}
@@ -2145,43 +2160,37 @@ public class PhyMouse implements ActionListener, ChangeListener {
final int xx = x * 2;
final int yy = y * 2;
- if (LOG) {
+ if (LOG)
+ {
System.out.println("recherche pour X s= " + x);
System.out.println("recherche pour Y s= " + y);
System.out.println("recherche pour X s-1= " + xx);
- System.out.println("recherche pour X s-1= "
- + (xx + 1));
+ System.out.println("recherche pour X s-1= " + (xx + 1));
System.out.println("recherche pour Y s-1= " + yy);
- System.out.println("recherche pour Y s-1= "
- + (yy + 1));
+ System.out.println("recherche pour Y s-1= " + (yy + 1));
}
- out[x + y * currentScale.width] = in[xx + yy
- * previousScale.width]
- + in[xx + 1 + yy * previousScale.width]
- + in[xx + (yy + 1) * previousScale.width]
+ out[x + y * currentScale.width] = in[xx + yy * previousScale.width]
+ + in[xx + 1 + yy * previousScale.width] + in[xx + (yy + 1) * previousScale.width]
+ in[xx + 1 + (yy + 1) * previousScale.width];
- if (LOG) {
- System.out.println("previous val 1: "
- + in[xx + yy * previousScale.width]);
- System.out.println("previous val 2: "
- + in[xx + 1 + yy * previousScale.width]);
- System.out.println("previous val 3: "
- + in[xx + (yy + 1) * previousScale.width]);
- System.out.println("previous val 4: "
- + in[xx + 1 + (yy + 1)
- * previousScale.width]);
- System.out.println("OUT destination value = "
- + out[x + y * currentScale.width]);
+ if (LOG)
+ {
+ System.out.println("previous val 1: " + in[xx + yy * previousScale.width]);
+ System.out.println("previous val 2: " + in[xx + 1 + yy * previousScale.width]);
+ System.out.println("previous val 3: " + in[xx + (yy + 1) * previousScale.width]);
+ System.out.println("previous val 4: " + in[xx + 1 + (yy + 1) * previousScale.width]);
+ System.out.println("OUT destination value = " + out[x + y * currentScale.width]);
}
// calcul des barycentres propagés
- if (out[x + y * currentScale.width] != 0) {
+ if (out[x + y * currentScale.width] != 0)
+ {
- if (LOG) {
+ if (LOG)
+ {
System.out.println("Entree dans barycentre.");
}
@@ -2190,73 +2199,53 @@ public class PhyMouse implements ActionListener, ChangeListener {
currentScale.barycenterX[x + y * currentScale.width] =
- ((float) (previousScale.value[xx + yy
- * previousScale.width]
- * previousScale.barycenterX[xx + yy
- * previousScale.width]
- + previousScale.value[xx + 1 + yy
- * previousScale.width]
- * previousScale.barycenterX[xx + 1 + yy
- * previousScale.width]
- + previousScale.value[xx + (yy + 1)
- * previousScale.width]
- * previousScale.barycenterX[xx + (yy + 1)
- * previousScale.width] + previousScale.value[xx
- + 1 + (yy + 1) * previousScale.width]
- * previousScale.barycenterX[xx + 1
- + (yy + 1) * previousScale.width]) / (float) out[x
- + y * currentScale.width]);
-
- if (LOG) {
+ ((float) (previousScale.value[xx + yy * previousScale.width]
+ * previousScale.barycenterX[xx + yy * previousScale.width]
+ + previousScale.value[xx + 1 + yy * previousScale.width]
+ * previousScale.barycenterX[xx + 1 + yy * previousScale.width]
+ + previousScale.value[xx + (yy + 1) * previousScale.width]
+ * previousScale.barycenterX[xx + (yy + 1) * previousScale.width]
+ + previousScale.value[xx + 1 + (yy + 1) * previousScale.width]
+ * previousScale.barycenterX[xx + 1
+ + (yy + 1) * previousScale.width])
+ / (float) out[x + y * currentScale.width]);
+
+ if (LOG)
+ {
System.out.println("Calcul de by: ");
- System.out.println("p1: "
- + previousScale.barycenterY[xx + yy
- * previousScale.width]);
- System.out.println("p2: "
- + previousScale.barycenterY[xx + 1 + yy
- * previousScale.width]);
- System.out.println("p3: "
- + previousScale.barycenterY[xx
- + (yy + 1)
- * previousScale.width]);
- System.out.println("p4: "
- + previousScale.barycenterY[xx + 1
- + (yy + 1)
- * previousScale.width]);
+ System.out.println("p1: " + previousScale.barycenterY[xx + yy * previousScale.width]);
+ System.out
+ .println("p2: " + previousScale.barycenterY[xx + 1 + yy * previousScale.width]);
+ System.out.println(
+ "p3: " + previousScale.barycenterY[xx + (yy + 1) * previousScale.width]);
+ System.out.println(
+ "p4: " + previousScale.barycenterY[xx + 1 + (yy + 1) * previousScale.width]);
}
currentScale.barycenterY[x + y * currentScale.width] =
- ((float) (previousScale.value[xx + yy
- * previousScale.width]
- * previousScale.barycenterY[xx + yy
- * previousScale.width]
- + previousScale.value[xx + 1 + yy
- * previousScale.width]
- * previousScale.barycenterY[xx + 1 + yy
- * previousScale.width]
- + previousScale.value[xx + (yy + 1)
- * previousScale.width]
- * previousScale.barycenterY[xx + (yy + 1)
- * previousScale.width] + previousScale.value[xx
- + 1 + (yy + 1) * previousScale.width]
- * previousScale.barycenterY[xx + 1
- + (yy + 1) * previousScale.width]) / (float) out[x
- + y * currentScale.width]);
-
- if (LOG) {
- System.out.println("Bary x:"
- + currentScale.barycenterX[x + y
- * currentScale.width]);
- System.out.println("Bary y:"
- + currentScale.barycenterY[x + y
- * currentScale.width]);
+ ((float) (previousScale.value[xx + yy * previousScale.width]
+ * previousScale.barycenterY[xx + yy * previousScale.width]
+ + previousScale.value[xx + 1 + yy * previousScale.width]
+ * previousScale.barycenterY[xx + 1 + yy * previousScale.width]
+ + previousScale.value[xx + (yy + 1) * previousScale.width]
+ * previousScale.barycenterY[xx + (yy + 1) * previousScale.width]
+ + previousScale.value[xx + 1 + (yy + 1) * previousScale.width]
+ * previousScale.barycenterY[xx + 1
+ + (yy + 1) * previousScale.width])
+ / (float) out[x + y * currentScale.width]);
+
+ if (LOG)
+ {
+ System.out.println("Bary x:" + currentScale.barycenterX[x + y * currentScale.width]);
+ System.out.println("Bary y:" + currentScale.barycenterY[x + y * currentScale.width]);
}
}
- else {
+ else
+ {
}
@@ -2273,25 +2262,27 @@ public class PhyMouse implements ActionListener, ChangeListener {
}
- if (e.getSource() == resultButton) {
+ if (e.getSource() == resultButton)
+ {
writeXMLResult();
}
-// if ( e.getSource() == applyNewScaleButton )
-// {
-// //applyNewScaleButton
-// SCALE = Float.parseFloat(scaleTextField.getText());
-//
-// for ( Mouse mouse : mouseList )
-// {
-// // set mouse again
-//
-//// sdf
-// }
-// }
+ // if ( e.getSource() == applyNewScaleButton )
+ // {
+ // //applyNewScaleButton
+ // SCALE = Float.parseFloat(scaleTextField.getText());
+ //
+ // for ( Mouse mouse : mouseList )
+ // {
+ // // set mouse again
+ //
+ //// sdf
+ // }
+ // }
}
- public boolean isStable() {
+ public boolean isStable()
+ {
final double seuil = 1000d;
@@ -2301,7 +2292,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
return true;
}
- public void loadXML(File currentFile) {
+ public void loadXML(File currentFile)
+ {
// LOAD DOCUMENT
@@ -2319,44 +2311,43 @@ public class PhyMouse implements ActionListener, ChangeListener {
{
final String expression = "//MOUSEA/DET";
NodeList nodes;
- try {
- nodes = (NodeList) xpath.evaluate(expression, XMLDocument,
- XPathConstants.NODESET);
+ try
+ {
+ nodes = (NodeList) xpath.evaluate(expression, XMLDocument, XPathConstants.NODESET);
System.out.println("node size : " + nodes.getLength());
- for (int i = 0; i < nodes.getLength(); i++) {
+ for (int i = 0; i < nodes.getLength(); i++)
+ {
final Element detNode = (Element) nodes.item(i);
final MouseInfoRecord mouseInfoRecord = new MouseInfoRecord();
- mouseInfoRecord.bodyPosition = new Point2D.Float(
- Float.parseFloat(detNode.getAttribute("bodyx")),
+ mouseInfoRecord.bodyPosition = new Point2D.Float(Float.parseFloat(detNode.getAttribute("bodyx")),
Float.parseFloat(detNode.getAttribute("bodyy")));
- mouseInfoRecord.headPosition = new Point2D.Float(
- Float.parseFloat(detNode.getAttribute("headx")),
+ mouseInfoRecord.headPosition = new Point2D.Float(Float.parseFloat(detNode.getAttribute("headx")),
Float.parseFloat(detNode.getAttribute("heady")));
- mouseInfoRecord.tailPosition = new Point2D.Float(
- Float.parseFloat(detNode.getAttribute("tailx")),
+ mouseInfoRecord.tailPosition = new Point2D.Float(Float.parseFloat(detNode.getAttribute("tailx")),
Float.parseFloat(detNode.getAttribute("taily")));
float neckX = 0;
float neckY = 0;
- try {
+ try
+ {
neckX = Float.parseFloat(detNode.getAttribute("neckx"));
neckY = Float.parseFloat(detNode.getAttribute("necky"));
}
- catch (Exception e) {
+ catch (Exception e)
+ {
}
mouseInfoRecord.neckPosition = new Point2D.Float(neckX, neckY);
- mouseARecord.put(
- Integer.parseInt(detNode.getAttribute("t")),
- mouseInfoRecord);
+ mouseARecord.put(Integer.parseInt(detNode.getAttribute("t")), mouseInfoRecord);
}
}
- catch (final XPathExpressionException e) {
+ catch (final XPathExpressionException e)
+ {
e.printStackTrace();
}
@@ -2367,44 +2358,43 @@ public class PhyMouse implements ActionListener, ChangeListener {
{
final String expression = "//MOUSEB/DET";
NodeList nodes;
- try {
- nodes = (NodeList) xpath.evaluate(expression, XMLDocument,
- XPathConstants.NODESET);
+ try
+ {
+ nodes = (NodeList) xpath.evaluate(expression, XMLDocument, XPathConstants.NODESET);
System.out.println("node size : " + nodes.getLength());
- for (int i = 0; i < nodes.getLength(); i++) {
+ for (int i = 0; i < nodes.getLength(); i++)
+ {
final Element detNode = (Element) nodes.item(i);
final MouseInfoRecord mouseInfoRecord = new MouseInfoRecord();
- mouseInfoRecord.bodyPosition = new Point2D.Float(
- Float.parseFloat(detNode.getAttribute("bodyx")),
+ mouseInfoRecord.bodyPosition = new Point2D.Float(Float.parseFloat(detNode.getAttribute("bodyx")),
Float.parseFloat(detNode.getAttribute("bodyy")));
- mouseInfoRecord.headPosition = new Point2D.Float(
- Float.parseFloat(detNode.getAttribute("headx")),
+ mouseInfoRecord.headPosition = new Point2D.Float(Float.parseFloat(detNode.getAttribute("headx")),
Float.parseFloat(detNode.getAttribute("heady")));
- mouseInfoRecord.tailPosition = new Point2D.Float(
- Float.parseFloat(detNode.getAttribute("tailx")),
+ mouseInfoRecord.tailPosition = new Point2D.Float(Float.parseFloat(detNode.getAttribute("tailx")),
Float.parseFloat(detNode.getAttribute("taily")));
float neckX = 0;
float neckY = 0;
- try {
+ try
+ {
neckX = Float.parseFloat(detNode.getAttribute("neckx"));
neckY = Float.parseFloat(detNode.getAttribute("necky"));
}
- catch (Exception e) {
+ catch (Exception e)
+ {
}
mouseInfoRecord.neckPosition = new Point2D.Float(neckX, neckY);
- mouseBRecord.put(
- Integer.parseInt(detNode.getAttribute("t")),
- mouseInfoRecord);
+ mouseBRecord.put(Integer.parseInt(detNode.getAttribute("t")), mouseInfoRecord);
}
}
- catch (final XPathExpressionException e) {
+ catch (final XPathExpressionException e)
+ {
e.printStackTrace();
}
@@ -2412,19 +2402,21 @@ public class PhyMouse implements ActionListener, ChangeListener {
}
- public void saveXML(File currentFile) {
+ public void saveXML(File currentFile)
+ {
// CREATE DOCUMENT
final File XMLFile = new File(currentFile.getAbsoluteFile() + ".xml");
- final DocumentBuilderFactory dbfac = DocumentBuilderFactory
- .newInstance();
+ final DocumentBuilderFactory dbfac = DocumentBuilderFactory.newInstance();
DocumentBuilder docBuilder = null;
- try {
+ try
+ {
docBuilder = dbfac.newDocumentBuilder();
}
- catch (final ParserConfigurationException e) {
+ catch (final ParserConfigurationException e)
+ {
e.printStackTrace();
}
final Document XMLDocument = docBuilder.newDocument();
@@ -2452,7 +2444,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
{
Set<Integer> integerKey = mouseARecord.keySet();
Iterator<Integer> it = integerKey.iterator();
- while (it.hasNext()) {
+ while (it.hasNext())
+ {
Integer t = it.next();
if (t > maxT)
maxT = t;
@@ -2461,7 +2454,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
// MOUSE A
- for (int t = 0; t <= maxT; t++) {
+ for (int t = 0; t <= maxT; t++)
+ {
final MouseInfoRecord mouseAInfo = mouseARecord.get(t);
if (mouseAInfo == null)
@@ -2470,26 +2464,17 @@ public class PhyMouse implements ActionListener, ChangeListener {
final Element newResultElement = XMLDocument.createElement("DET");
newResultElement.setAttribute("t", "" + t);
- newResultElement.setAttribute("headx",
- "" + mouseAInfo.headPosition.getX());
- newResultElement.setAttribute("heady",
- "" + mouseAInfo.headPosition.getY());
-
+ newResultElement.setAttribute("headx", "" + mouseAInfo.headPosition.getX());
+ newResultElement.setAttribute("heady", "" + mouseAInfo.headPosition.getY());
- newResultElement.setAttribute("bodyx",
- "" + mouseAInfo.bodyPosition.getX());
- newResultElement.setAttribute("bodyy",
- "" + mouseAInfo.bodyPosition.getY());
+ newResultElement.setAttribute("bodyx", "" + mouseAInfo.bodyPosition.getX());
+ newResultElement.setAttribute("bodyy", "" + mouseAInfo.bodyPosition.getY());
- newResultElement.setAttribute("tailx",
- "" + mouseAInfo.tailPosition.getX());
- newResultElement.setAttribute("taily",
- "" + mouseAInfo.tailPosition.getY());
+ newResultElement.setAttribute("tailx", "" + mouseAInfo.tailPosition.getX());
+ newResultElement.setAttribute("taily", "" + mouseAInfo.tailPosition.getY());
- newResultElement.setAttribute("neckx",
- "" + mouseAInfo.neckPosition.getX());
- newResultElement.setAttribute("necky",
- "" + mouseAInfo.neckPosition.getY());
+ newResultElement.setAttribute("neckx", "" + mouseAInfo.neckPosition.getX());
+ newResultElement.setAttribute("necky", "" + mouseAInfo.neckPosition.getY());
resultMouseA.appendChild(newResultElement);
@@ -2500,35 +2485,27 @@ public class PhyMouse implements ActionListener, ChangeListener {
if (mouseList.size() > 1) // check if two mice are presents
{
- for (int t = 0; t <= maxT; t++) {
+ for (int t = 0; t <= maxT; t++)
+ {
final MouseInfoRecord mouseBInfo = mouseBRecord.get(t);
if (mouseBInfo == null)
continue;
- final Element newResultElement = XMLDocument
- .createElement("DET");
+ final Element newResultElement = XMLDocument.createElement("DET");
newResultElement.setAttribute("t", "" + t);
- newResultElement.setAttribute("headx", ""
- + mouseBInfo.headPosition.getX());
- newResultElement.setAttribute("heady", ""
- + mouseBInfo.headPosition.getY());
+ newResultElement.setAttribute("headx", "" + mouseBInfo.headPosition.getX());
+ newResultElement.setAttribute("heady", "" + mouseBInfo.headPosition.getY());
- newResultElement.setAttribute("bodyx", ""
- + mouseBInfo.bodyPosition.getX());
- newResultElement.setAttribute("bodyy", ""
- + mouseBInfo.bodyPosition.getY());
+ newResultElement.setAttribute("bodyx", "" + mouseBInfo.bodyPosition.getX());
+ newResultElement.setAttribute("bodyy", "" + mouseBInfo.bodyPosition.getY());
- newResultElement.setAttribute("tailx", ""
- + mouseBInfo.tailPosition.getX());
- newResultElement.setAttribute("taily", ""
- + mouseBInfo.tailPosition.getY());
+ newResultElement.setAttribute("tailx", "" + mouseBInfo.tailPosition.getX());
+ newResultElement.setAttribute("taily", "" + mouseBInfo.tailPosition.getY());
- newResultElement.setAttribute("neckx",
- "" + mouseBInfo.neckPosition.getX());
- newResultElement.setAttribute("necky",
- "" + mouseBInfo.neckPosition.getY());
+ newResultElement.setAttribute("neckx", "" + mouseBInfo.neckPosition.getX());
+ newResultElement.setAttribute("necky", "" + mouseBInfo.neckPosition.getY());
resultMouseB.appendChild(newResultElement);
@@ -2542,42 +2519,49 @@ public class PhyMouse implements ActionListener, ChangeListener {
}
@Override
- public void stateChanged(ChangeEvent e) {
+ public void stateChanged(ChangeEvent e)
+ {
- if (e.getSource() == binaryThresholdSpinner) {
- SEUIL_BINARY_MAP = Integer.parseInt(binaryThresholdSpinner
- .getValue().toString());
+ if (e.getSource() == binaryThresholdSpinner)
+ {
+ SEUIL_BINARY_MAP = Integer.parseInt(binaryThresholdSpinner.getValue().toString());
}
}
- public void divideTimePer2() {
+ public void divideTimePer2()
+ {
int max = 0;
final Set<Integer> integerKey = mouseBRecord.keySet();
final Iterator<Integer> it = integerKey.iterator();
- while (it.hasNext()) {
+ while (it.hasNext())
+ {
final Integer t = it.next();
if (t > max)
max = t;
}
System.out.println("Max =" + max);
- for (int i = 0; i <= max; i += 2) {
- if (mouseARecord.containsKey(i)) {
+ for (int i = 0; i <= max; i += 2)
+ {
+ if (mouseARecord.containsKey(i))
+ {
final MouseInfoRecord mouseRecordA = mouseARecord.get(i);
mouseARecord.remove(i);
mouseARecord.put(i / 2, mouseRecordA);
}
- if (mouseBRecord.containsKey(i)) {
+ if (mouseBRecord.containsKey(i))
+ {
final MouseInfoRecord mouseRecordB = mouseBRecord.get(i);
mouseBRecord.remove(i);
mouseBRecord.put(i / 2, mouseRecordB);
}
}
- for (int i = max / 2; i <= max; i++) {
+ for (int i = max / 2; i <= max; i++)
+ {
mouseARecord.remove(i);
mouseBRecord.remove(i);
}
@@ -2588,7 +2572,8 @@ public class PhyMouse implements ActionListener, ChangeListener {
boolean reverseThresholdBoolean = false;
- public void setReverseThreshold(boolean reverseThresholdBoolean) {
+ public void setReverseThreshold(boolean reverseThresholdBoolean)
+ {
this.reverseThresholdBoolean = reverseThresholdBoolean;
@@ -2598,10 +2583,14 @@ public class PhyMouse implements ActionListener, ChangeListener {
/**
* force head location for the next compute force frame (1 frame only)
- * @param mouseNumber int
- * @param controlPoint MAnchor2D
+ *
+ * @param mouseNumber
+ * int
+ * @param controlPoint
+ * MAnchor2D
*/
- public void setHeadLocation(int mouseNumber, MAnchor2D controlPoint) {
+ public void setHeadLocation(int mouseNumber, MAnchor2D controlPoint)
+ {
headForcedPosition[mouseNumber] = controlPoint;
}