diff --git a/src/main/java/plugins/fab/MiceProfiler/MiceProfilerLabelAnalyser.java b/src/main/java/plugins/fab/MiceProfiler/MiceProfilerLabelAnalyser.java
index cfea292485d842b927c2cc0e0ac0335b81a6537f..5bf07bc2f8661780c79009f4f8818960ec0b2731 100644
--- a/src/main/java/plugins/fab/MiceProfiler/MiceProfilerLabelAnalyser.java
+++ b/src/main/java/plugins/fab/MiceProfiler/MiceProfilerLabelAnalyser.java
@@ -18,1631 +18,25 @@
*/
package plugins.fab.MiceProfiler;
-import java.awt.BasicStroke;
-import java.awt.BorderLayout;
-import java.awt.Color;
-import java.awt.Component;
-import java.awt.Dimension;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.io.File;
-import java.io.IOException;
-import java.util.ArrayList;
-import java.util.HashMap;
-
-import javax.swing.BoxLayout;
-import javax.swing.ButtonGroup;
-import javax.swing.JCheckBox;
-import javax.swing.JCheckBoxMenuItem;
-import javax.swing.JLabel;
-import javax.swing.JMenu;
-import javax.swing.JMenuBar;
-import javax.swing.JMenuItem;
-import javax.swing.JPanel;
-import javax.swing.JRadioButton;
-import javax.swing.JScrollPane;
-import javax.swing.JTextField;
-
-import org.jfree.chart.ChartFactory;
-import org.jfree.chart.ChartPanel;
-import org.jfree.chart.JFreeChart;
-import org.jfree.chart.plot.PlotOrientation;
-import org.jfree.chart.plot.XYPlot;
-import org.jfree.chart.renderer.xy.DeviationRenderer;
-import org.jfree.data.xy.XYSeries;
-import org.jfree.data.xy.XYSeriesCollection;
-import org.jfree.data.xy.YIntervalSeries;
-import org.jfree.data.xy.YIntervalSeriesCollection;
-
-import icy.file.xls.XlsManager;
-import icy.gui.dialog.ActionDialog;
-import icy.gui.dialog.SaveDialog;
-import icy.gui.frame.IcyFrame;
-import icy.gui.util.GuiUtil;
-import icy.main.Icy;
-import icy.plugin.abstract_.Plugin;
-import icy.plugin.interface_.PluginBundled;
-import icy.plugin.interface_.PluginImageAnalysis;
-import icy.swimmingPool.SwimmingObject;
-import icy.swimmingPool.SwimmingPoolEvent;
-import icy.swimmingPool.SwimmingPoolListener;
-import jmapps.ui.MessageDialog;
-import jxl.format.Colour;
+import icy.plugin.abstract_.PluginActionable;
/**
- * @author Fab
- * Goal : extract graphs from animal pool.
- * Take its source from the swimming pool.
- * Can be multi instanced.
+ * Just for backward compatibility (plugin is now bundled in Mice Profiler Tracker)
*/
-public class MiceProfilerLabelAnalyser extends Plugin
- implements PluginImageAnalysis, PluginBundled, SwimmingPoolListener, ActionListener
+public class MiceProfilerLabelAnalyser extends PluginActionable
{
-
- JPanel mainPanel = GuiUtil.generatePanel();
- IcyFrame icyFrame = GuiUtil.generateTitleFrame("Label Analyser", mainPanel, new Dimension(0, 0), true, true, true,
- true);
-
- ArrayList<EventSelector> eventSelectorList = null;
- JFreeChart chart;
- XYSeriesCollection xyDataset = new XYSeriesCollection();
- YIntervalSeriesCollection yintervalseriescollection = new YIntervalSeriesCollection();
-
- JTextField binSizeTextField = new JTextField("150");
- JTextField fpsTextField = new JTextField("15");
- JTextField totalTimeTextField = new JTextField("7200");
- ArrayList<AnimalPoolSelector> animalList = new ArrayList<AnimalPoolSelector>();
- IcyFrame graphFrame = new IcyFrame("graph", true, true, true, true);
- // JCheckBox displayLegendCheckBox = new JCheckBox("display Legend", false);
- JCheckBoxMenuItem displayLegendCheckBoxMenuItem = new JCheckBoxMenuItem("display Legend", true);
-
- // JButton extractDataToProbabilityGridButton = new JButton("Compute decision graph script");
- JMenuItem extractDataToProbabilityGridMenuItem = new JMenuItem("Compute decision graph script to console");
- JTextField extractDataToProbabilityTimeValue = new JTextField("150");
- // JButton extractCurrentDataGraphToExcelButton = new JButton("Export current graph to xls");
-
- JMenuItem extractCurrentDataGraphToExcelMenuItem = new JMenuItem("Export current graph to xls");
- JMenuItem extractCurrentDataGraphWithAllLabelDensityToExcelMenuItem = new JMenuItem(
- "Export graphs to xls (one per label-density)");
- // JButton extractAllDataToGraphAndExcel = new JButton("Export all datas (in pools) to xls");
- JMenuItem extractAllDataToGraphAndExcelMenuItem = new JMenuItem("Export all datas (in pools) to xls");
+ final MiceProfilerLabelAnalyserInternal implementer;
public MiceProfilerLabelAnalyser()
{
+ super();
- // CHECK IF ANIMAL ARE LOADED IN SWIMMING POOL. IF NOT RETURN.
-
- animalList.clear();
- ArrayList<SwimmingObject> liste = Icy.getMainInterface().getSwimmingPool().getObjects();
- for (SwimmingObject so : liste)
- {
- if (so.getObject() instanceof Animal)
- {
- animalList.add(new AnimalPoolSelector((Animal) so.getObject()));
- }
- }
-
- if (animalList.size() == 0)
- {
- MessageDialog.createInfoDialog(null, "No animal loaded, please run VideoLabelMaker first.");
- return;
- }
-
- // END OF ANIMAL LOADED CHECK
-
- Icy.getMainInterface().getSwimmingPool().addListener(this);
-
- chart = ChartFactory.createXYLineChart("", "t", "y", yintervalseriescollection, PlotOrientation.VERTICAL, true, // true ,
- false, false);
-
- XYPlot xyplot = (XYPlot) chart.getPlot();
- xyplot.setInsets(new org.jfree.chart.ui.RectangleInsets(5D, 5D, 5D, 20D));
- xyplot.setBackgroundPaint(Color.lightGray);
- xyplot.setAxisOffset(new org.jfree.chart.ui.RectangleInsets(5D, 5D, 5D, 5D));
- xyplot.setDomainGridlinePaint(Color.white);
- xyplot.setRangeGridlinePaint(Color.white);
- DeviationRenderer deviationrenderer = new DeviationRenderer(true, false);
- for (int i = 0; i < 100; i++)
- {
- deviationrenderer.setSeriesStroke(i, new BasicStroke(3F, 1, 1));
- deviationrenderer.setSeriesStroke(i + 1, new BasicStroke(3F, 1, 1));
- deviationrenderer.setSeriesFillPaint(0, new Color(255, 200, 200));
- deviationrenderer.setSeriesFillPaint(1, new Color(200, 200, 255));
- deviationrenderer.setSeriesFillPaint(3, new Color(200, 255, 200));
- deviationrenderer.setSeriesFillPaint(2, new Color(255, 255, 200));
- }
- xyplot.setRenderer(deviationrenderer);
-
- refreshData();
-
- icyFrame.addToDesktopPane();
- icyFrame.pack();
- icyFrame.setSize(800, 600);
- icyFrame.center();
- icyFrame.toFront();
- icyFrame.setVisible(true);
-
- graphFrame.addToDesktopPane();
- // graphFrame.center();
- graphFrame.setVisible(true);
- icyFrame.toFront();
-
- extractCurrentDataGraphToExcelMenuItem.addActionListener(this);
- extractAllDataToGraphAndExcelMenuItem.addActionListener(this);
- // displayLegendCheckBoxMenuItem.addActionListener( this );
- extractDataToProbabilityGridMenuItem.addActionListener(this);
- extractCurrentDataGraphWithAllLabelDensityToExcelMenuItem.addActionListener(this);
-
- JMenuBar menuBar = new JMenuBar();
- JMenu menuExport = new JMenu("Export");
- menuExport.add(extractCurrentDataGraphToExcelMenuItem);
- menuExport.add(extractAllDataToGraphAndExcelMenuItem);
- menuExport.add(extractDataToProbabilityGridMenuItem);
- menuExport.add(extractCurrentDataGraphWithAllLabelDensityToExcelMenuItem);
- menuBar.add(menuExport);
-
- // JMenu menuGraph = new JMenu("Graph");
- // menuGraph.add( displayLegendCheckBoxMenuItem );
- // menuBar.add( menuGraph );
-
- icyFrame.setJMenuBar(menuBar);
-
- }
-
- /**
- * refresh graphs
- *
- * @param file
- */
- void refreshGraph(boolean xlsExport, String file)
- {
-
- XlsManager xls = null;
- int cursorX = 0;
- int cursorY = 1;
-
- if (xlsExport)
- {
- String saveFileName = file;
- if (file == null)
- {
- saveFileName = SaveDialog.chooseFile("Export current graph to xls file",
- System.getProperty("user.home"), "outputGraph.xls", ".xls");
- if (saveFileName == null)
- return;
- }
-
- try
- {
- xls = new XlsManager(new File(saveFileName));
- xls.createNewPage("Mice profiler graph export");
-
- }
- catch (IOException e)
- {
-
- e.printStackTrace();
- }
- }
-
- int binSize = Integer.parseInt(binSizeTextField.getText());
- int endFrame = Integer.parseInt(totalTimeTextField.getText());
- float fps = Float.parseFloat(fpsTextField.getText());
-
- xyDataset.removeAllSeries();
- yintervalseriescollection.removeAllSeries();
-
- // creation des series:
-
- // no pool
-
- for (EventSelector eventSelector : eventSelectorList)
- {
-
- for (AnimalPoolSelector animalSelector : animalList)
- {
-
- if (animalSelector.noPool.isSelected())
- {
-
- if (animalSelector.enable.isSelected())
- {
-
- if (eventSelector.nbEventCheckBox.isSelected())
- {
- EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList
- .get(eventSelector.eventNumber);
- String titreSerie = animalSelector.animal.animalName + " np Event Nb"
- + eventTimeLine.criteriaName;
- XYSeries seriesXY = new XYSeries(titreSerie);
-
- if (xlsExport)
- {
- cursorX++;
- xls.setLabel(cursorX, 0, titreSerie);
- cursorY = 1;
- }
-
- YIntervalSeries yintervalseries = new YIntervalSeries(
- animalSelector.animal.animalName + " np Event Nb" + eventTimeLine.criteriaName);
-
- for (int t = 0; t < endFrame; t += binSize)
- {
- double value = eventTimeLine.getNbEvent(t, t + binSize - 1);
- yintervalseries.add(t / fps, value, value, value);
-
- if (xlsExport)
- {
- xls.setNumber(0, cursorY, t / fps); // legende
- xls.setNumber(cursorX, cursorY, value); // valeur
- cursorY++;
- }
-
- }
- yintervalseriescollection.addSeries(yintervalseries);
-
- }
-
- if (eventSelector.lengthCheckBox.isSelected())
- {
- EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList
- .get(eventSelector.eventNumber);
- XYSeries seriesXY = new XYSeries(
- animalSelector.animal.animalName + " np Event l" + eventTimeLine.criteriaName);
-
- String titreSerie = animalSelector.animal.animalName + " np Event l"
- + eventTimeLine.criteriaName;
- YIntervalSeries yintervalseries = new YIntervalSeries(titreSerie);
-
- if (xlsExport)
- {
- cursorX++;
- xls.setLabel(cursorX, 0, titreSerie);
- cursorY = 1;
- }
-
- for (int t = 0; t < endFrame; t += binSize)
- {
- double value = eventTimeLine.getLengthEvent(t, t + binSize - 1);
- yintervalseries.add(t / fps, value, value, value);
-
- if (xlsExport)
- {
- xls.setNumber(0, cursorY, t / fps); // legende
- xls.setNumber(cursorX, cursorY, value); // valeur
- cursorY++;
- }
-
- }
- yintervalseriescollection.addSeries(yintervalseries);
-
- }
-
- // critere discret
- if (eventSelector.displayDiscreteValueCheckBox.isSelected())
- {
- EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList
- .get(eventSelector.eventNumber);
- XYSeries seriesXY = new XYSeries(
- animalSelector.animal.animalName + " dv Event " + eventTimeLine.criteriaName);
-
- String titreSerie = animalSelector.animal.animalName + " dv Event "
- + eventTimeLine.criteriaName;
-
- YIntervalSeries yintervalseries = new YIntervalSeries(titreSerie);
-
- if (xlsExport)
- {
- cursorX++;
- xls.setLabel(cursorX, 0, titreSerie);
- cursorY = 1;
- }
-
- for (int t = 0; t < endFrame; t += binSize)
- {
-
- double value = eventTimeLine.getMeanValue(t, t + binSize - 1);
- yintervalseries.add(t / fps, value, value, value);
-
- if (xlsExport)
- {
- xls.setNumber(0, cursorY, t / fps); // legende
- xls.setNumber(cursorX, cursorY, value); // valeur
- cursorY++;
- }
-
- }
- yintervalseriescollection.addSeries(yintervalseries);
-
- }
-
- // critere density
- if (eventSelector.densityCheckBox.isSelected())
- {
-
- EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList
- .get(eventSelector.eventNumber);
- XYSeries seriesXY = new XYSeries(
- animalSelector.animal.animalName + " dv Density " + eventTimeLine.criteriaName);
-
- String titreSerie = animalSelector.animal.animalName + " dv Density "
- + eventTimeLine.criteriaName;
-
- YIntervalSeries yintervalseries = new YIntervalSeries(titreSerie);
-
- if (xlsExport)
- {
- cursorX++;
- xls.setLabel(cursorX, 0, titreSerie);
- cursorY = 1;
- }
-
- for (int t = 0; t < endFrame; t += binSize)
- {
-
- double value = eventTimeLine.getDensity(t, t + binSize - 1);
-
- yintervalseries.add(t / fps, value, value, value);
-
- if (xlsExport)
- {
- xls.setNumber(0, cursorY, t / fps); // legende
- xls.setNumber(cursorX, cursorY, value); // valeur
- cursorY++;
- }
-
- }
- yintervalseriescollection.addSeries(yintervalseries);
-
- }
-
- }
- }
- }
-
- }
-
- updateGraphSeriesForPool(Criteria.NB_EVENT, 1, endFrame, binSize, xls, xlsExport);
- updateGraphSeriesForPool(Criteria.LENGTH_EVENT, 1, endFrame, binSize, xls, xlsExport);
- updateGraphSeriesForPool(Criteria.DISCRETE_VALUE, 1, endFrame, binSize, xls, xlsExport);
- updateGraphSeriesForPool(Criteria.DENSITY_VALUE, 1, endFrame, binSize, xls, xlsExport);
- updateGraphSeriesForPool(Criteria.NB_EVENT, 2, endFrame, binSize, xls, xlsExport);
- updateGraphSeriesForPool(Criteria.LENGTH_EVENT, 2, endFrame, binSize, xls, xlsExport);
- updateGraphSeriesForPool(Criteria.DISCRETE_VALUE, 2, endFrame, binSize, xls, xlsExport);
- updateGraphSeriesForPool(Criteria.DENSITY_VALUE, 2, endFrame, binSize, xls, xlsExport);
-
- if (xlsExport)
- {
- // System.out.println( "xls debug: " + xls.getExcelPage() );
- xls.SaveAndClose();
- }
-
- }
-
- enum Criteria
- {
- NB_EVENT, LENGTH_EVENT, DISCRETE_VALUE, DENSITY_VALUE
- }
-
- void updateGraphSeriesForPool(Criteria criteria, int pool, int endFrame, int binSize, XlsManager xls,
- boolean xlsExport)
- {
- int cursorX = 1;
- int cursorY = 0;
-
- float fps = Float.parseFloat(fpsTextField.getText());
-
- boolean process = false;
- for (AnimalPoolSelector animalSelector : animalList)
- {
- if ((pool == 1 && animalSelector.pool1.isSelected()) || (pool == 2 && animalSelector.pool2.isSelected()))
- {
- process = true;
- }
- }
-
- if (!process)
- return;
-
- for (EventSelector eventSelector : eventSelectorList)
- {
- if ((criteria == Criteria.NB_EVENT && eventSelector.nbEventCheckBox.isSelected())
- || (criteria == Criteria.LENGTH_EVENT && eventSelector.lengthCheckBox.isSelected())
- || (criteria == Criteria.DISCRETE_VALUE && eventSelector.displayDiscreteValueCheckBox.isSelected())
- || (criteria == Criteria.DENSITY_VALUE && eventSelector.densityCheckBox.isSelected()))
- {
-
- String chaine = "p" + pool + " " + criteria.toString();
- chaine += animalList.get(0).animal.eventTimeLineList.get(eventSelector.eventNumber).criteriaName;
- XYSeries seriesXY = new XYSeries(chaine);
- YIntervalSeries yintervalseries = new YIntervalSeries(chaine);
-
- if (xlsExport)
- {
- xls.createNewPage(chaine);
- cursorX = 1;
- }
-
- for (int t = 0; t < endFrame; t += binSize)
- {
- if (xlsExport)
- {
- xls.setLabel(cursorX, cursorY, "" + t + "-" + (t + binSize));
- cursorY++;
- cursorY++;
-
- }
-
- // ROI3DArea r = new ROI3DArea( new Point3D.Double( 0,0,0 ) );
-
- ArrayList<Double> listResultat = new ArrayList<Double>();
-
- for (AnimalPoolSelector animalSelector : animalList)
- {
-
- if ((pool == 1 && animalSelector.pool1.isSelected())
- || (pool == 2 && animalSelector.pool2.isSelected()))
- {
-
- if (animalSelector.enable.isSelected())
- {
- EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList
- .get(eventSelector.eventNumber);
-
- if (criteria == Criteria.NB_EVENT)
- {
- listResultat.add(eventTimeLine.getNbEvent(t, t + binSize - 1));
-
- if (xlsExport)
- {
- xls.setNumber(cursorX, cursorY, eventTimeLine.getNbEvent(t, t + binSize - 1));
- cursorY++;
- }
-
- }
- if (criteria == Criteria.LENGTH_EVENT)
- {
- listResultat.add(eventTimeLine.getLengthEvent(t, t + binSize - 1));
-
- if (xlsExport)
- {
- xls.setNumber(cursorX, cursorY,
- eventTimeLine.getLengthEvent(t, t + binSize - 1));
- cursorY++;
- }
-
- }
-
- if (criteria == Criteria.DISCRETE_VALUE)
- {
- listResultat.add(eventTimeLine.getMeanValue(t, t + binSize - 1));
-
- if (xlsExport)
- {
- xls.setNumber(cursorX, cursorY, eventTimeLine.getMeanValue(t, t + binSize - 1));
- cursorY++;
- }
-
- }
- if (criteria == Criteria.DENSITY_VALUE)
- {
- listResultat.add(eventTimeLine.getDensity(t, t + binSize - 1));
-
- if (xlsExport)
- {
- xls.setNumber(cursorX, cursorY, eventTimeLine.getDensity(t, t + binSize - 1));
- cursorY++;
- }
-
- }
-
- }
- }
- }
-
- if (listResultat.size() != 0)
- {
- double[] resultatTab2 = new double[listResultat.size()];
- for (int i = 0; i < listResultat.size(); i++)
- {
- resultatTab2[i] = listResultat.get(i);
- }
-
- double error = flanagan.analysis.Stat.standardDeviation(resultatTab2);
- error = error / Math.sqrt(listResultat.size() - 1);
- double mean = flanagan.analysis.Stat.mean(resultatTab2);
-
- yintervalseries.add(t / fps, mean, mean - (error), mean + (error));
-
- if (xlsExport)
- {
- cursorY++;
- xls.setNumber(cursorX, cursorY, mean);
- }
-
- }
- else
- {
- yintervalseries.add(t / fps, 0, 0, 0);
- }
-
- cursorX++;
- cursorY = 0;
- }
-
- xyDataset.addSeries(seriesXY);
-
- yintervalseriescollection.addSeries(yintervalseries);
-
- }
- }
- }
-
- /**
- * Refresh Datas
- */
- private void refreshData()
- {
-
- mainPanel.removeAll();
-
- JPanel animalPoolListPanel = GuiUtil.generatePanel("Animal pool List");
- JPanel criteriaListPanel = GuiUtil.generatePanel("criteria List");
-
- ArrayList<SwimmingObject> liste = Icy.getMainInterface().getSwimmingPool().getObjects();
- animalList.clear();
-
- Animal animalToGetCriteria = null;
- for (SwimmingObject so : liste)
- {
- if (so.getObject() instanceof Animal)
- {
- animalList.add(new AnimalPoolSelector((Animal) so.getObject()));
- animalToGetCriteria = (Animal) so.getObject();
- }
- }
-
- if (animalToGetCriteria == null) // there is no more animal in pool
- {
- return;
- }
-
- for (AnimalPoolSelector animalSelector : animalList)
- {
- animalPoolListPanel.add(animalSelector.panel);
- }
-
- mainPanel.add(GuiUtil.besidesPanel(new JLabel("Bin Size ( nb frames )"), binSizeTextField,
- new JLabel("Total time to compute ( nb frames )"), totalTimeTextField));
- // mainPanel.add( GuiUtil.besidesPanel ( displayLegendCheckBox , extractAllDataToGraphAndExcelMenuItem , extractDataToProbabilityGridButton ) );
- // mainPanel.add( GuiUtil.besidesPanel ( displayLegendCheckBox , extractDataToProbabilityGridMenuItem ) );
- // mainPanel.add( GuiUtil.besidesPanel ( displayLegendCheckBoxMenuItem ) );
-
- // mainPanel.add( GuiUtil.besidesPanel( new JLabel("time window forward:") , extractDataToProbabilityTimeValue , extractCurrentDataGraphToExcelMenuItem
- // ) );
- mainPanel.add(GuiUtil.besidesPanel(new JLabel("time window forward:"), extractDataToProbabilityTimeValue));
- mainPanel.add(GuiUtil.besidesPanel(new JLabel("FPS:"), fpsTextField));
-
- eventSelectorList = new ArrayList<EventSelector>();
-
- for (EventTimeLine et : animalToGetCriteria.eventTimeLineList)
- {
- EventSelector eventSelector = new EventSelector(animalToGetCriteria.eventTimeLineList.indexOf(et), et);
- eventSelectorList.add(eventSelector);
-
- criteriaListPanel.add(eventSelector.panel);
- }
-
- JPanel parameterPanel = new JPanel(new BorderLayout());
-
- JScrollPane animalPoolListScrollPane = new JScrollPane(animalPoolListPanel,
- JScrollPane.VERTICAL_SCROLLBAR_ALWAYS, JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
- JScrollPane criteriaListScrollPane = new JScrollPane(criteriaListPanel, JScrollPane.VERTICAL_SCROLLBAR_ALWAYS,
- JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
-
- parameterPanel.add(animalPoolListScrollPane, BorderLayout.WEST);
- parameterPanel.add(criteriaListScrollPane, BorderLayout.CENTER);
-
- mainPanel.add(parameterPanel);
-
- graphFrame.getContentPane()
- .add(new ChartPanel(chart, 700, 200, 700, 200, 700, 700, false, false, true, true, true, true));
- graphFrame.pack();
-
- refreshGraph(false, "");
-
- mainPanel.updateUI();
-
- }
-
- @Override
- public void swimmingPoolChangeEvent(SwimmingPoolEvent swimmingPoolEvent)
- {
-
- refreshData();
-
- }
-
- @Override
- public void compute()
- {
-
- }
-
- class EventSelector implements ActionListener
- {
- JPanel panel = GuiUtil.generatePanelWithoutBorder();
- int eventNumber;
- JCheckBox nbEventCheckBox = new JCheckBox("nb Event");
- JCheckBox lengthCheckBox = new JCheckBox("length");
- JCheckBox densityCheckBox = new JCheckBox("density");
- JLabel criteriaLabel;
- JCheckBox displayDiscreteValueCheckBox = new JCheckBox("discrete Value");
-
- public EventSelector(int eventNumber, EventTimeLine e)
- {
- this.eventNumber = eventNumber;
-
- int maxSizeString = e.criteriaName.length();
- if (maxSizeString > 40)
- maxSizeString = 40;
-
- criteriaLabel = new JLabel(e.criteriaName.substring(0, maxSizeString));
- criteriaLabel.setToolTipText(e.criteriaName);
-
- if (e.timeLineCategory == TimeLineCategory.USE_BOOLEAN_EVENT)
- {
- panel.add(GuiUtil.besidesPanel(criteriaLabel, densityCheckBox, nbEventCheckBox, lengthCheckBox));
- }
-
- if (e.timeLineCategory == TimeLineCategory.USE_DISCRETE_EVENT)
- {
- panel.add(GuiUtil.besidesPanel(criteriaLabel, displayDiscreteValueCheckBox));
- }
-
- densityCheckBox.addActionListener(this);
- nbEventCheckBox.addActionListener(this);
- lengthCheckBox.addActionListener(this);
- displayDiscreteValueCheckBox.addActionListener(this);
-
- }
-
- @Override
- public void actionPerformed(ActionEvent e)
- {
- refreshGraph(false, "");
- }
-
- }
-
- class AnimalPoolSelector implements ActionListener
- {
- JPanel panel = GuiUtil.generatePanelWithoutBorder();
- Animal animal;
-
- JCheckBox enable = new JCheckBox("Enable", true);
- JRadioButton pool1 = new JRadioButton("Pool 1");
- JRadioButton pool2 = new JRadioButton("Pool 2");
- JRadioButton noPool = new JRadioButton("no pool", true);
-
- ButtonGroup poolGroup = new ButtonGroup();
- ButtonGroup carecterizationGroup = new ButtonGroup();
-
- public AnimalPoolSelector(Animal animal)
- {
-
- this.animal = animal;
-
- enable.addActionListener(this);
- pool1.addActionListener(this);
- pool2.addActionListener(this);
- noPool.addActionListener(this);
-
- poolGroup.add(pool1);
- poolGroup.add(pool2);
- poolGroup.add(noPool);
-
- int maxSizeString = animal.animalName.length();
- if (maxSizeString > 5)
- maxSizeString = 5;
-
- enable.setText(animal.animalName.substring(0, maxSizeString));
- enable.setToolTipText(animal.animalName);
-
- panel.add(GuiUtil.besidesPanel(new Component[] {
-
- enable, pool1, pool2, noPool}
-
- ));
-
- }
-
- @Override
- public void actionPerformed(ActionEvent e)
- {
- refreshGraph(false, "");
- }
- }
-
- @Override
- public void actionPerformed(ActionEvent e)
- {
-
- refreshGraph(false, "");
-
- if (e.getSource() == extractCurrentDataGraphToExcelMenuItem)
- {
- extractCurrentDataGraphToExcel();
- }
-
- if (e.getSource() == extractAllDataToGraphAndExcelMenuItem)
- {
- exportAllData();
- }
-
- if (e.getSource() == extractDataToProbabilityGridMenuItem)
- {
- extractDataToProbabilityGrid2();
- }
-
- if (e.getSource() == extractCurrentDataGraphWithAllLabelDensityToExcelMenuItem)
- {
- extractDataGraphWithAllLabelDensityToExcel();
- }
-
- }
-
- /**
- * Extract all the data by selecting all the different criteria, one by one.
- */
- private void extractDataGraphWithAllLabelDensityToExcel()
- {
- String saveFileName = SaveDialog.chooseFile("Save xls file", "", "Mice Profiler - ");
-
- if (saveFileName == null)
- return;
-
- for (EventSelector eventSelector : eventSelectorList)
- {
- for (EventSelector eventSelector2 : eventSelectorList) // clear all check boxes
- {
- eventSelector2.densityCheckBox.setSelected(false);
- }
-
- eventSelector.densityCheckBox.setSelected(true);
-
- String eventLabel = eventSelector.criteriaLabel.getText().replaceAll("[^a-zA-Z0-9\\._]+", "_");
- String fileName = saveFileName + " - " + eventLabel + ".xls";
-
- refreshGraph(true, fileName);
- }
-
- }
-
- private void extractCurrentDataGraphToExcel()
- {
-
- refreshGraph(true, null);
-
- }
-
- /**
- * Extraction des grilles de proba de passage d'un etat a un autre sous feuille excel.
- * Nouvelle version 2 (nov 2010)
- */
- private void extractDataToProbabilityGrid2()
- {
-
- System.out.println("export version nov 2010");
-
- int timeWindow = Integer.parseInt(extractDataToProbabilityTimeValue.getText());
- int offsetY = 3;
- int offsetX = 1;
-
- // XlsManager xls =null;
- // try {
- // xls = new XlsManager( System.getProperty("user.home") + "\\output "+(timeWindow-15)+"-"+timeWindow+"f.xls");
- // } catch (IOException e) {
- //
- // e.printStackTrace();
- // }
-
- // JTextField startTextField = new JTextField("0");
-
- ActionDialog actionDialog = new ActionDialog("Select parameters for tansition graph.");
- JPanel mainPanel = new JPanel();
- actionDialog.setPreferredSize(new Dimension(400, 400));
- actionDialog.getMainPanel().add(new JScrollPane(mainPanel));
- // actionDialog.getMainPanel().setLayout( new BoxLayout( actionDialog.getMainPanel() , BoxLayout.PAGE_AXIS ));
- mainPanel.setLayout(new BoxLayout(mainPanel, BoxLayout.PAGE_AXIS));
- animalList.get(0).animal.eventTimeLineList.size();
-
- JTextField minProbability = new JTextField("0.3");
- mainPanel.add(GuiUtil.createLineBoxPanel(new JLabel("Min probability: "), minProbability));
- JTextField fpsTextField = new JTextField("15");
- mainPanel.add(GuiUtil.createLineBoxPanel(new JLabel("FPS: "), fpsTextField));
- JTextField maxNumberOfCandidateTextField = new JTextField("4");
- mainPanel
- .add(GuiUtil.createLineBoxPanel(new JLabel("Max number of ancestor: "), maxNumberOfCandidateTextField));
- JCheckBox forceLocation = new JCheckBox("Force the location of the event in the graph (circular rendering)",
- false);
- mainPanel.add(GuiUtil.createLineBoxPanel(forceLocation));
-
- HashMap<Integer, JCheckBox> selectedEventHashMap = new HashMap<Integer, JCheckBox>();
-
- for (EventTimeLine event : animalList.get(0).animal.eventTimeLineList)
- {
- JCheckBox booleanField = new JCheckBox(event.criteriaName, true);
- // actionDialog.getMainPanel().add( GuiUtil.createLineBoxPanel( booleanField ) );
- mainPanel.add(GuiUtil.createLineBoxPanel(booleanField));
- int index = animalList.get(0).animal.eventTimeLineList.indexOf(event);
- selectedEventHashMap.put(index, booleanField);
- if (index == 1)
- booleanField.setSelected(false);
- if (index >= 7 && index <= 10)
- booleanField.setSelected(false);
- if (index >= 13 && index <= 20)
- booleanField.setSelected(false);
- if (index >= 27)
- booleanField.setSelected(false);
-
- }
- actionDialog.pack();
- actionDialog.setLocationRelativeTo(null);
- actionDialog.setVisible(true);
-
- if (actionDialog.isCanceled())
- return;
-
- float fps = Float.parseFloat(fpsTextField.getText());
- int MAX_NUMBER_OF_CANDIDATE = Integer.parseInt(maxNumberOfCandidateTextField.getText());
-
- System.out.println("WARNING:");
- System.out.println(
- "This output consider all the loaded animal in the Label Analyser as coming from the same pool.");
- System.out.println("i.e. only 1 pool is considered.");
- System.out.println("version Jan 2013. p>0.1 instead of p>0.3");
-
- int nbTotalDeCritere = animalList.get(0).animal.eventTimeLineList.size();
-
- float poolProba0_4[][][] = new float[animalList.size()][nbTotalDeCritere][nbTotalDeCritere];
- float poolProba4_8[][][] = new float[animalList.size()][nbTotalDeCritere][nbTotalDeCritere];
-
- for (int animalNumber = 0; animalNumber < animalList.size(); animalNumber++)
- {
- Animal animal = animalList.get(animalNumber).animal;
- // xls.createNewPage( animal.animalName );
-
- // xls.setLabel( 0 , 0 , "se lit: event de la colonne x a une proba p d etre precede par ligne y");
- // xls.setLabel( 0 , 1 , "timeforward(frames):" + (timeWindow-15) + " to " + timeWindow );
- // xls.setLabel( 0 , 2 , "animal:" + animal.animalName );
-
- // int FENETRE_RECHERCHE_FRAME = 15*3;
- int FENETRE_RECHERCHE_FRAME = (int) (fps * 3);
-
- for (int eventNumberSource = 0; eventNumberSource < animal.eventTimeLineList.size(); eventNumberSource++) // parcours la liste des events.
- {
-
- // xls.setNumber( 2*eventNumberSource+1 + offsetX, 0 + offsetY , eventNumberSource + 1 );
-
- for (int eventNumberTarget = 0; eventNumberTarget < animal.eventTimeLineList
- .size(); eventNumberTarget++) // parcours la liste des events.
- {
-
- // xls.setNumber( 0 + offsetX , eventNumberTarget+1 + offsetY , eventNumberTarget + 1 );
- // xls.setLabel( 0 , eventNumberTarget+1 + offsetY , animalList.get( 0 ).animal.eventTimeLineList.get( eventNumberTarget ).criteriaName );
-
- EventTimeLine eventTimeLineSource = animal.eventTimeLineList.get(eventNumberSource);
- EventTimeLine eventTimeLineTarget = animal.eventTimeLineList.get(eventNumberTarget);
-
- float nbEventSource04 = 0;
- float nbEventTarget04 = 0;
- float nbPassageSourceTargetOk04 = 0;
- float nbPassageTargetSourceOk04 = 0;
-
- for (EventCriteria eventCriteriaSource : eventTimeLineSource.eventList)
- {
- if (eventCriteriaSource.startFrame > 3600)
- continue;
- nbEventSource04++;
-
- for (EventCriteria eventCriteriaTarget : eventTimeLineTarget.eventList)
- {
- if (eventCriteriaTarget.startFrame > 3600)
- continue;
-
- if (eventCriteriaTarget.startFrame >= eventCriteriaSource.endFrame
- && eventCriteriaTarget.startFrame <= eventCriteriaSource.endFrame
- + FENETRE_RECHERCHE_FRAME)
- {
- nbPassageSourceTargetOk04++;
- break;
- }
- }
- }
-
- for (EventCriteria eventCriteriaTarget : eventTimeLineTarget.eventList)
- {
- if (eventCriteriaTarget.startFrame > 3600)
- continue;
- nbEventTarget04++;
-
- for (EventCriteria eventCriteriaSource : eventTimeLineSource.eventList)
- {
- if (eventCriteriaSource.startFrame > 3600)
- continue;
- if (eventCriteriaTarget.startFrame >= eventCriteriaSource.endFrame
- && eventCriteriaTarget.startFrame <= eventCriteriaSource.endFrame
- + FENETRE_RECHERCHE_FRAME)
- {
- nbPassageTargetSourceOk04++;
- break;
- }
- }
- }
-
- float probaStoT04 = nbPassageSourceTargetOk04 / nbEventSource04;
- float probaTtoS04 = nbPassageTargetSourceOk04 / nbEventTarget04;
- float proba2Way04 = probaStoT04 * probaTtoS04;
-
- float nbEventSource48 = 0;
- float nbEventTarget48 = 0;
- float nbPassageSourceTargetOk48 = 0;
- float nbPassageTargetSourceOk48 = 0;
-
- for (EventCriteria eventCriteriaSource : eventTimeLineSource.eventList)
- {
- if (eventCriteriaSource.startFrame < 3600)
- continue;
- nbEventSource48++;
-
- for (EventCriteria eventCriteriaTarget : eventTimeLineTarget.eventList)
- {
- if (eventCriteriaTarget.startFrame < 3600)
- continue;
-
- if (eventCriteriaTarget.startFrame >= eventCriteriaSource.endFrame
- && eventCriteriaTarget.startFrame <= eventCriteriaSource.endFrame
- + FENETRE_RECHERCHE_FRAME)
- {
- nbPassageSourceTargetOk48++;
- break;
- }
- }
- }
-
- for (EventCriteria eventCriteriaTarget : eventTimeLineTarget.eventList)
- {
- if (eventCriteriaTarget.startFrame < 3600)
- continue;
- nbEventTarget48++;
-
- for (EventCriteria eventCriteriaSource : eventTimeLineSource.eventList)
- {
- if (eventCriteriaSource.startFrame < 3600)
- continue;
- if (eventCriteriaTarget.startFrame >= eventCriteriaSource.endFrame
- && eventCriteriaTarget.startFrame <= eventCriteriaSource.endFrame
- + FENETRE_RECHERCHE_FRAME)
- {
- nbPassageTargetSourceOk48++;
- break;
- }
- }
- }
-
- float probaStoT48 = nbPassageSourceTargetOk48 / nbEventSource48;
- float probaTtoS48 = nbPassageTargetSourceOk48 / nbEventTarget48;
- float proba2Way48 = probaStoT48 * probaTtoS48;
-
- if (eventNumberSource != 9 && eventNumberSource != 10 && eventNumberTarget != 9
- && eventNumberTarget != 10) // enleve le speed
- {
- poolProba0_4[animalNumber][eventNumberSource][eventNumberTarget] = proba2Way04;
- poolProba4_8[animalNumber][eventNumberSource][eventNumberTarget] = proba2Way48;
- }
-
- }
- }
-
- }
-
- float meanAnimalProba0_4[][] = new float[nbTotalDeCritere][nbTotalDeCritere];
- float stddevAnimalProba0_4[][] = new float[nbTotalDeCritere][nbTotalDeCritere];
- float meanAnimalProba4_8[][] = new float[nbTotalDeCritere][nbTotalDeCritere];
- float stddevAnimalProba4_8[][] = new float[nbTotalDeCritere][nbTotalDeCritere];
-
- for (int eventNumberSource = 0; eventNumberSource < nbTotalDeCritere; eventNumberSource++) // parcours la liste des events.
- {
- for (int eventNumberTarget = 0; eventNumberTarget < nbTotalDeCritere; eventNumberTarget++) // parcours la liste des events.
- {
- float[] tabProba = new float[animalList.size()];
- for (int animalNumber = 0; animalNumber < animalList.size(); animalNumber++)
- {
- tabProba[animalNumber] = poolProba0_4[animalNumber][eventNumberSource][eventNumberTarget];
- meanAnimalProba0_4[eventNumberSource][eventNumberTarget] += poolProba0_4[animalNumber][eventNumberSource][eventNumberTarget];
-
- }
- meanAnimalProba0_4[eventNumberSource][eventNumberTarget] /= animalList.size();
- stddevAnimalProba0_4[eventNumberSource][eventNumberTarget] = flanagan.analysis.Stat
- .standardDeviation(tabProba);
- ;
- }
- }
-
- for (int eventNumberSource = 0; eventNumberSource < nbTotalDeCritere; eventNumberSource++) // parcours la liste des events.
- {
- for (int eventNumberTarget = 0; eventNumberTarget < nbTotalDeCritere; eventNumberTarget++) // parcours la liste des events.
- {
- float[] tabProba = new float[animalList.size()];
- for (int animalNumber = 0; animalNumber < animalList.size(); animalNumber++)
- {
- tabProba[animalNumber] = poolProba4_8[animalNumber][eventNumberSource][eventNumberTarget];
- meanAnimalProba4_8[eventNumberSource][eventNumberTarget] += poolProba4_8[animalNumber][eventNumberSource][eventNumberTarget];
-
- }
- meanAnimalProba4_8[eventNumberSource][eventNumberTarget] /= animalList.size();
- stddevAnimalProba4_8[eventNumberSource][eventNumberTarget] = flanagan.analysis.Stat
- .standardDeviation(tabProba);
- ;
- }
- }
-
- ArrayList<ArrayList<EventResult>> resultatParSource0_4 = new ArrayList<ArrayList<EventResult>>();
- ArrayList<ArrayList<EventResult>> resultatParSource4_8 = new ArrayList<ArrayList<EventResult>>();
-
- // int MAX_NUMBER_OF_CANDIDATE = 4; // was 4
-
- {
- for (int nbEventTarget = 0; nbEventTarget < nbTotalDeCritere; nbEventTarget++)
- {
- ArrayList<EventResult> eventResultList = new ArrayList<EventResult>();
- for (int nbEventSource = 0; nbEventSource < nbTotalDeCritere; nbEventSource++)
- {
- JCheckBox eTarget = selectedEventHashMap.get(nbEventTarget);
- JCheckBox eSource = selectedEventHashMap.get(nbEventSource);
- if (!eTarget.isSelected() || !eSource.isSelected())
- continue;
-
- /*
- * if ( nbEventTarget == 1 || nbEventSource == 1 ) continue;
- * if ( nbEventTarget == 7 || nbEventSource == 7 ) continue;
- * if ( nbEventTarget == 8 || nbEventSource == 8 ) continue;
- * if ( nbEventTarget == 9 || nbEventSource == 9 ) continue;
- * if ( nbEventTarget == 10 || nbEventSource == 10 ) continue;
- * if ( nbEventTarget == 13 || nbEventSource == 13 ) continue;
- * if ( nbEventTarget == 14 || nbEventSource == 14 ) continue;
- * if ( nbEventTarget == 15 || nbEventSource == 15 ) continue;
- * if ( nbEventTarget == 16 || nbEventSource == 16 ) continue;
- * if ( nbEventTarget == 17 || nbEventSource == 17 ) continue;
- * if ( nbEventTarget == 18 || nbEventSource == 18 ) continue;
- * if ( nbEventTarget == 19 || nbEventSource == 19 ) continue;
- * if ( nbEventTarget == 20 || nbEventSource == 20 ) continue;
- * if ( nbEventTarget >= 27 || nbEventSource >= 27 ) continue;
- */
-
- float probaProposee = meanAnimalProba0_4[nbEventSource][nbEventTarget];
- float stddevPropose = stddevAnimalProba0_4[nbEventSource][nbEventTarget];
-
- ArrayList<EventResult> eventResultListClone = (ArrayList<EventResult>) eventResultList.clone();
-
- for (EventResult resultClient : eventResultListClone)
- {
- if (resultClient.proba < probaProposee)
- {
- eventResultList.remove(resultClient);
- break;
- }
- }
-
- if (eventResultList.size() < MAX_NUMBER_OF_CANDIDATE)
- {
- EventResult result = new EventResult(nbEventSource, nbEventTarget, probaProposee, stddevPropose,
- "red");
- eventResultList.add(result);
- }
-
- }
- resultatParSource0_4.add(eventResultList);
-
- }
- }
-
- {
-
- for (int nbEventTarget = 0; nbEventTarget < nbTotalDeCritere; nbEventTarget++)
- {
- ArrayList<EventResult> eventResultList = new ArrayList<EventResult>();
- for (int nbEventSource = 0; nbEventSource < nbTotalDeCritere; nbEventSource++)
- {
- JCheckBox eTarget = selectedEventHashMap.get(nbEventTarget);
- JCheckBox eSource = selectedEventHashMap.get(nbEventSource);
- if (!eTarget.isSelected() || !eSource.isSelected())
- continue;
- //
- // if ( nbEventTarget == 1 || nbEventSource == 1 ) continue;
- // if ( nbEventTarget == 7 || nbEventSource == 7 ) continue;
- // if ( nbEventTarget == 8 || nbEventSource == 8 ) continue;
- // if ( nbEventTarget == 9 || nbEventSource == 9 ) continue;
- // if ( nbEventTarget == 10 || nbEventSource == 10 ) continue;
- // if ( nbEventTarget == 13 || nbEventSource == 13 ) continue;
- // if ( nbEventTarget == 14 || nbEventSource == 14 ) continue;
- // if ( nbEventTarget == 15 || nbEventSource == 15 ) continue;
- // if ( nbEventTarget == 16 || nbEventSource == 16 ) continue;
- // if ( nbEventTarget == 17 || nbEventSource == 17 ) continue;
- // if ( nbEventTarget == 18 || nbEventSource == 18 ) continue;
- // if ( nbEventTarget == 19 || nbEventSource == 19 ) continue;
- // if ( nbEventTarget == 20 || nbEventSource == 20 ) continue;
- // if ( nbEventTarget >= 27 || nbEventSource >= 27 ) continue;
-
- float probaProposee = meanAnimalProba4_8[nbEventSource][nbEventTarget];
- float stddevPropose = stddevAnimalProba4_8[nbEventSource][nbEventTarget];
-
- ArrayList<EventResult> eventResultListClone = (ArrayList<EventResult>) eventResultList.clone();
-
- for (EventResult resultClient : eventResultListClone)
- {
- if (resultClient.proba < probaProposee)
- {
- eventResultList.remove(resultClient);
- break;
- }
- }
-
- if (eventResultList.size() < MAX_NUMBER_OF_CANDIDATE)
- {
- EventResult result = new EventResult(nbEventSource, nbEventTarget, probaProposee, stddevPropose,
- "green");
- eventResultList.add(result);
- }
-
- }
- resultatParSource4_8.add(eventResultList);
-
- }
- }
-
- // GRAPH:
-
- boolean FORCE_LOCATION = forceLocation.isSelected();
-
- System.out.println("Put the following script in GraphViz:");
- if (FORCE_LOCATION)
- {
- System.out.println("/* @command = neato **/");
- }
- System.out.println("digraph {");
- System.out.println("splines=true;");
-
- // set the location of each available event
-
- if (FORCE_LOCATION)
- {
- double x = 0;
- double y = 0;
- double angle = 0;
-
- for (int eventIndex = 0; eventIndex < nbTotalDeCritere; eventIndex++)
- {
- JCheckBox eventBox = selectedEventHashMap.get(eventIndex);
- if (!eventBox.isSelected())
- continue;
- //
- // if( eventIndex == 1 ) continue;
- // if( eventIndex == 7 ) continue;
- // if( eventIndex == 8 ) continue;
- // if( eventIndex == 9 ) continue;
- // if( eventIndex == 10 ) continue;
- // if( eventIndex == 13 ) continue;
- // if( eventIndex == 14 ) continue;
- // if( eventIndex == 15 ) continue;
- // if( eventIndex == 16 ) continue;
- // if( eventIndex == 17 ) continue;
- // if( eventIndex == 18 ) continue;
- // if( eventIndex == 19 ) continue;
- // if( eventIndex == 20 ) continue;
- // if( eventIndex >= 27 ) continue;
-
- x = 300 + Math.cos(angle) * 300;
- y = 300 + Math.sin(angle) * 300;
-
- String criteriaName = animalList.get(0).animal.eventTimeLineList.get(eventIndex).criteriaName;
- criteriaName = keepFirstChars(criteriaName);
-
- String result = "\"" + criteriaName + "\"";
- result += "[";
- result += " pos=\"" + x + "," + y + "!" + "\" ";
- result += " shape=\"box\" ";
- result += " width=\"2\" ";
- result += "]";
-
- System.out.println(result);
-
- angle += (Math.PI * 2d) / 14d;
-
- // x+=200;
- // if ( x > 100 )
- // {
- // y+=100;
- // x=0;
- // }
-
- }
-
- }
-
- // animalList.get( 0 ).animal.eventTimeLineList.get( eventSource ).criteriaName
-
- // create graph
-
- for (int sourceList = 0; sourceList < nbTotalDeCritere; sourceList++)
- {
- ArrayList<EventResult> eventResultList0_4 = resultatParSource0_4.get(sourceList);
- ArrayList<EventResult> eventResultList4_8 = resultatParSource4_8.get(sourceList);
-
- ArrayList<EventResult> finalResult = createCommonList(eventResultList0_4, eventResultList4_8);
-
- for (EventResult eventResult : finalResult)
- {
- if (eventResult.enable)
- {
- if (eventResult.proba >= 0.1f) // was 0.3f
- {
- System.out.println(eventResult);
- }
- else
- {
-
- }
- }
- }
-
- }
-
- System.out.println("}");
-
- // xls.SaveAndClose();
-
- }
-
- ArrayList<EventResult> createCommonList(ArrayList<EventResult> eventResultList0_4,
- ArrayList<EventResult> eventResultList4_8)
- {
- ArrayList<EventResult> finalResult = new ArrayList<EventResult>();
- for (EventResult eventResult0_4 : eventResultList0_4)
- {
- finalResult.add(eventResult0_4);
- }
- for (EventResult eventResult4_8 : eventResultList4_8)
- {
- finalResult.add(eventResult4_8);
- }
-
- for (EventResult eventResultA : finalResult)
- {
- for (EventResult eventResultB : finalResult)
- {
- if (eventResultA != eventResultB && eventResultA.enable && eventResultB.enable
- && eventResultA.eventSource == eventResultB.eventSource
- && eventResultA.eventTarget == eventResultB.eventTarget
- && checkIfProbaOverlap(eventResultA, eventResultB))
- {
- eventResultA.proba = (eventResultA.proba + eventResultB.proba) / 2f;
- eventResultB.enable = false;
- eventResultA.color = "black";
- }
-
- }
- }
-
- return finalResult;
- }
-
- private boolean checkIfProbaOverlap(EventResult eventResultA, EventResult eventResultB)
- {
- float sigma = 1f;
-
- float borneMinA = eventResultA.proba - eventResultA.stddev * sigma;
- float borneMaxA = eventResultA.proba + eventResultA.stddev * sigma;
-
- float borneMinB = eventResultB.proba - eventResultB.stddev * sigma;
- float borneMaxB = eventResultB.proba + eventResultB.stddev * sigma;
-
- if (borneMinA > borneMinB && borneMinA < borneMaxB)
- return true;
- if (borneMaxA > borneMinB && borneMaxA < borneMaxB)
- return true;
-
- return false;
- }
-
- class ProbaResult
- {
- public ProbaResult(float proba, float stddev, int startFrame)
- {
- this.stddev = stddev;
- this.proba = proba;
- this.startFrame = startFrame;
- }
-
- float stddev;
- float proba;
- int startFrame;
- }
-
- class EventResult
- {
- boolean enable = true;
-
- public EventResult(int eventSource, int eventTarget, float proba, float stddev, String color)
- {
- this.eventSource = eventSource;
- this.eventTarget = eventTarget;
- this.stddev = stddev;
- this.proba = proba;
- this.color = color;
- }
-
- float stddev;
- int eventSource;
- int eventTarget;
- float proba;
- String color;
-
- @Override
- public String toString()
- {
-
- String result = "";
- result += "\"" + keepFirstChars(animalList.get(0).animal.eventTimeLineList.get(eventSource).criteriaName)
- + "\"";
- result += "->";
- result += "\"" + keepFirstChars(animalList.get(0).animal.eventTimeLineList.get(eventTarget).criteriaName)
- + "\"";
- result += " ";
- result += "[ ";
- result += "color=\"" + color + "\"";
- result += " style=\"setlinewidth(" + proba * 5 + ")\"]";
- result += ";";
-
- return result;
- }
-
- /**
- * Just provide the name of events. Without link.
- *
- * @return
- */
- public String getEvents()
- {
- String result = "";
- result += "\"" + keepFirstChars(animalList.get(0).animal.eventTimeLineList.get(eventSource).criteriaName)
- + "\"";
- result += ";";
- result += "\"" + keepFirstChars(animalList.get(0).animal.eventTimeLineList.get(eventTarget).criteriaName)
- + "\"";
- result += ";";
- return result;
- }
-
- }
-
- public static String keepFirstChars(String s)
- {
- int MAXSIZE = 20;
- if (s.length() > MAXSIZE)
- s = (String) s.substring(0, MAXSIZE);
- return s;
- }
-
- void exportAllData()
- {
- System.out.println("export all data in pool to excel.");
-
- // export pool 1
-
- // String saveFileName = SaveDialog.chooseFile("Export all data to xls file", System.getProperty("user.home") ,"output.xls", ".xls");
-
- JTextField startTextField = new JTextField("0");
- JTextField endTextField = new JTextField("8");
-
- ActionDialog actionDialog = new ActionDialog("Select range (in minutes)");
- actionDialog.getMainPanel().setLayout(new BoxLayout(actionDialog.getMainPanel(), BoxLayout.PAGE_AXIS));
- actionDialog.getMainPanel().add(GuiUtil.createLineBoxPanel(new JLabel("start (minutes)"), startTextField));
- actionDialog.getMainPanel().add(GuiUtil.createLineBoxPanel(new JLabel("end (minutes)"), endTextField));
- actionDialog.pack();
- actionDialog.setLocationRelativeTo(null);
- actionDialog.setVisible(true);
-
- if (actionDialog.isCanceled())
- return;
-
- float startMinute = Float.parseFloat(startTextField.getText());
- float endMinute = Float.parseFloat(endTextField.getText());
-
- String saveFileName = SaveDialog.chooseFile("Save xls file", "", "Mice Profiler - all data", ".xls");
-
- if (saveFileName == null)
- return;
- XlsManager xls = null;
-
- try
- {
-
- xls = new XlsManager(saveFileName);
- xls.createNewPage("Data in pool");
-
- }
- catch (IOException e)
- {
-
- e.printStackTrace();
- }
-
- xls.createNewPage("Results");
-
- int cursorY = 0;
-
- for (EventSelector eventSelector : eventSelectorList)
- {
- String eventTitle = animalList.get(0).animal.eventTimeLineList.get(eventSelector.eventNumber).criteriaName;
-
- xls.setLabel(0, cursorY, "Event #" + eventSelector.eventNumber, Colour.YELLOW);
- cursorY++;
- xls.setLabel(0, cursorY, eventTitle);
- cursorY += 2;
-
- cursorY = exportXLSPool(1, eventSelector, cursorY, xls, startMinute, endMinute);
- cursorY += 3;
- cursorY = exportXLSPool(2, eventSelector, cursorY, xls, startMinute, endMinute);
- cursorY += 4;
- }
-
- xls.SaveAndClose();
-
- }
-
- int exportXLSPool(int pool, EventSelector eventSelector, int cursorY, XlsManager xls, float startMinute,
- float endMinute)
- {
- float halfMinute = (endMinute + startMinute) / 2f;
-
- xls.setLabel(0, cursorY, "p" + pool);
- // xls.setLabel( 1, cursorY, "nb e 0-4" );
- xls.setLabel(1, cursorY, "nb event from " + startMinute + " to " + halfMinute + " minutes");
- // xls.setLabel( 2, cursorY, "nb e 4-8" );
- xls.setLabel(2, cursorY, "nb event from " + halfMinute + " to " + endMinute + " minutes");
- // xls.setLabel( 3, cursorY, "nb e 0-8" );
- xls.setLabel(3, cursorY, "nb event from " + startMinute + " to " + endMinute + " minutes");
-
- // xls.setLabel( 4, cursorY, "l e 0-4" );
- xls.setLabel(4, cursorY, "length of event from " + startMinute + " to " + halfMinute + " minutes");
- // xls.setLabel( 5, cursorY, "l e 4-8" );
- xls.setLabel(5, cursorY, "length of event from " + halfMinute + " to " + endMinute + " minutes");
- // xls.setLabel( 6, cursorY, "l e 0-8" );
- xls.setLabel(6, cursorY, "length of event from " + startMinute + " to " + endMinute + " minutes");
-
- float fps = Float.parseFloat(fpsTextField.getText());
-
- cursorY++;
-
- for (AnimalPoolSelector animalSelector : animalList)
- {
- if (pool == 1 && animalSelector.pool1.isSelected() || pool == 2 && animalSelector.pool2.isSelected())
- {
- if (animalSelector.enable.isSelected())
- {
- xls.setLabel(0, cursorY, animalSelector.animal.animalName);
-
- Animal animal = animalSelector.animal;
- EventTimeLine eventTimeLine = animal.eventTimeLineList.get(eventSelector.eventNumber);
-
- // boolean debug = false;
-
- // nb event e 0-4 le
- // if ( debug ) System.out.println("0-4");
- {
- int nb = 0;
- int length = 0;
-
- // int maxTime = (int) (4*60*fps);
- int maxTime = (int) (halfMinute * 60 * fps);
- int minTime = (int) (startMinute * 60 * fps);
-
- for (EventCriteria event : eventTimeLine.eventList)
- {
- if (event.startFrame < maxTime && event.startFrame >= minTime)
- {
- nb++;
- length += event.getLength();
- // if ( debug )
- // {
- // System.out.println( eventTimeLine.eventList.indexOf( event ) + ">" + event.getLength() );
- // }
- }
- }
- xls.setNumber(1, cursorY, nb);
- xls.setNumber(4, cursorY, length);
- // if ( debug )
- // {
- // System.out.println( "nb event"+nb );
- // System.out.println( "length event"+length );
- // }
-
- }
-
- // nb event e 4-8 le
- // if ( debug ) System.out.println("4-8");
- {
- int nb = 0;
- int length = 0;
-
- // int minTime = (int)(4d*60d*fps);
- int minTime = (int) (halfMinute * 60d * fps);
- int maxTime = (int) (endMinute * 60 * fps);
- for (EventCriteria event : eventTimeLine.eventList)
- {
- if (event.startFrame < maxTime && event.startFrame > minTime)
- {
- nb++;
- length += event.getLength();
- // if ( debug )
- // {
- // System.out.println( eventTimeLine.eventList.indexOf( event ) + ">" + event.getLength() );
- // }
- }
- }
- xls.setNumber(2, cursorY, nb);
- xls.setNumber(5, cursorY, length);
- // if ( debug )
- // {
- // System.out.println( "nb event"+nb );
- // System.out.println( "length event"+length );
- // }
-
- }
-
- // nb event e 0-8 le
- // if ( debug ) System.out.println("0-8");
- {
- int nb = 0;
- int length = 0;
- int minTime = (int) (startMinute * 60d * fps);
- // int maxTime = (int) (8*60*fps);
- int maxTime = (int) (endMinute * 60 * fps);
- for (EventCriteria event : eventTimeLine.eventList)
- {
- if (event.startFrame < maxTime && event.startFrame > minTime)
- {
- nb++;
- length += event.getLength();
- // if ( debug )
- // {
- // System.out.println( eventTimeLine.eventList.indexOf( event ) + ">" + event.getLength() );
- // }
- }
- }
- xls.setNumber(3, cursorY, nb);
- xls.setNumber(6, cursorY, length);
- // if ( debug )
- // {
- // System.out.println( "nb event"+nb );
- // System.out.println( "length event"+length );
- // }
-
- }
-
- cursorY++;
-
- }
- }
- }
- return cursorY;
+ implementer = new MiceProfilerLabelAnalyserInternal();
}
@Override
- public String getMainPluginClassName()
+ public void run()
{
- return MiceProfilerTracker.class.getName();
+ // nothing to do her
}
}
\ No newline at end of file
diff --git a/src/main/java/plugins/fab/MiceProfiler/MiceProfilerLabelAnalyserInternal.java b/src/main/java/plugins/fab/MiceProfiler/MiceProfilerLabelAnalyserInternal.java
new file mode 100644
index 0000000000000000000000000000000000000000..bdb27f7b9838273cb1b4ee558f57f7724b57dd2e
--- /dev/null
+++ b/src/main/java/plugins/fab/MiceProfiler/MiceProfilerLabelAnalyserInternal.java
@@ -0,0 +1,1638 @@
+/*
+ * Copyright 2011, 2012 Institut Pasteur.
+ *
+ * This file is part of MiceProfiler.
+ *
+ * MiceProfiler is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * MiceProfiler is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with MiceProfiler. If not, see <http://www.gnu.org/licenses/>.
+ */
+package plugins.fab.MiceProfiler;
+
+import java.awt.BasicStroke;
+import java.awt.BorderLayout;
+import java.awt.Color;
+import java.awt.Component;
+import java.awt.Dimension;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.io.File;
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.HashMap;
+
+import javax.swing.BoxLayout;
+import javax.swing.ButtonGroup;
+import javax.swing.JCheckBox;
+import javax.swing.JCheckBoxMenuItem;
+import javax.swing.JLabel;
+import javax.swing.JMenu;
+import javax.swing.JMenuBar;
+import javax.swing.JMenuItem;
+import javax.swing.JPanel;
+import javax.swing.JRadioButton;
+import javax.swing.JScrollPane;
+import javax.swing.JTextField;
+
+import org.jfree.chart.ChartFactory;
+import org.jfree.chart.ChartPanel;
+import org.jfree.chart.JFreeChart;
+import org.jfree.chart.plot.PlotOrientation;
+import org.jfree.chart.plot.XYPlot;
+import org.jfree.chart.renderer.xy.DeviationRenderer;
+import org.jfree.data.xy.XYSeries;
+import org.jfree.data.xy.XYSeriesCollection;
+import org.jfree.data.xy.YIntervalSeries;
+import org.jfree.data.xy.YIntervalSeriesCollection;
+
+import icy.file.xls.XlsManager;
+import icy.gui.dialog.ActionDialog;
+import icy.gui.dialog.MessageDialog;
+import icy.gui.dialog.SaveDialog;
+import icy.gui.frame.IcyFrame;
+import icy.gui.util.GuiUtil;
+import icy.main.Icy;
+import icy.swimmingPool.SwimmingObject;
+import icy.swimmingPool.SwimmingPoolEvent;
+import icy.swimmingPool.SwimmingPoolListener;
+import jxl.format.Colour;
+
+/**
+ * @author Fab
+ * Goal : extract graphs from animal pool.
+ * Take its source from the swimming pool.
+ * Can be multi instanced.
+ */
+public class MiceProfilerLabelAnalyserInternal implements SwimmingPoolListener, ActionListener
+{
+
+ JPanel mainPanel = GuiUtil.generatePanel();
+ IcyFrame icyFrame = GuiUtil.generateTitleFrame("Label Analyser", mainPanel, new Dimension(0, 0), true, true, true,
+ true);
+
+ ArrayList<EventSelector> eventSelectorList = null;
+ JFreeChart chart;
+ XYSeriesCollection xyDataset = new XYSeriesCollection();
+ YIntervalSeriesCollection yintervalseriescollection = new YIntervalSeriesCollection();
+
+ JTextField binSizeTextField = new JTextField("150");
+ JTextField fpsTextField = new JTextField("15");
+ JTextField totalTimeTextField = new JTextField("7200");
+ ArrayList<AnimalPoolSelector> animalList = new ArrayList<AnimalPoolSelector>();
+ IcyFrame graphFrame = new IcyFrame("graph", true, true, true, true);
+ // JCheckBox displayLegendCheckBox = new JCheckBox("display Legend", false);
+ JCheckBoxMenuItem displayLegendCheckBoxMenuItem = new JCheckBoxMenuItem("display Legend", true);
+
+ // JButton extractDataToProbabilityGridButton = new JButton("Compute decision graph script");
+ JMenuItem extractDataToProbabilityGridMenuItem = new JMenuItem("Compute decision graph script to console");
+ JTextField extractDataToProbabilityTimeValue = new JTextField("150");
+ // JButton extractCurrentDataGraphToExcelButton = new JButton("Export current graph to xls");
+
+ JMenuItem extractCurrentDataGraphToExcelMenuItem = new JMenuItem("Export current graph to xls");
+ JMenuItem extractCurrentDataGraphWithAllLabelDensityToExcelMenuItem = new JMenuItem(
+ "Export graphs to xls (one per label-density)");
+ // JButton extractAllDataToGraphAndExcel = new JButton("Export all datas (in pools) to xls");
+ JMenuItem extractAllDataToGraphAndExcelMenuItem = new JMenuItem("Export all datas (in pools) to xls");
+
+ public MiceProfilerLabelAnalyserInternal()
+ {
+ // CHECK IF ANIMAL ARE LOADED IN SWIMMING POOL. IF NOT RETURN.
+
+ animalList.clear();
+ ArrayList<SwimmingObject> liste = Icy.getMainInterface().getSwimmingPool().getObjects();
+ for (SwimmingObject so : liste)
+ {
+ if (so.getObject() instanceof Animal)
+ {
+ animalList.add(new AnimalPoolSelector((Animal) so.getObject()));
+ }
+ }
+
+ if (animalList.size() == 0)
+ {
+ MessageDialog.showDialog("No animal loaded, please run VideoLabelMaker first.",
+ MessageDialog.INFORMATION_MESSAGE);
+ return;
+ }
+
+ // END OF ANIMAL LOADED CHECK
+
+ Icy.getMainInterface().getSwimmingPool().addListener(this);
+
+ chart = ChartFactory.createXYLineChart("", "t", "y", yintervalseriescollection, PlotOrientation.VERTICAL, true, // true ,
+ false, false);
+
+ XYPlot xyplot = (XYPlot) chart.getPlot();
+ xyplot.setInsets(new org.jfree.chart.ui.RectangleInsets(5D, 5D, 5D, 20D));
+ xyplot.setBackgroundPaint(Color.lightGray);
+ xyplot.setAxisOffset(new org.jfree.chart.ui.RectangleInsets(5D, 5D, 5D, 5D));
+ xyplot.setDomainGridlinePaint(Color.white);
+ xyplot.setRangeGridlinePaint(Color.white);
+ DeviationRenderer deviationrenderer = new DeviationRenderer(true, false);
+ for (int i = 0; i < 100; i++)
+ {
+ deviationrenderer.setSeriesStroke(i, new BasicStroke(3F, 1, 1));
+ deviationrenderer.setSeriesStroke(i + 1, new BasicStroke(3F, 1, 1));
+ deviationrenderer.setSeriesFillPaint(0, new Color(255, 200, 200));
+ deviationrenderer.setSeriesFillPaint(1, new Color(200, 200, 255));
+ deviationrenderer.setSeriesFillPaint(3, new Color(200, 255, 200));
+ deviationrenderer.setSeriesFillPaint(2, new Color(255, 255, 200));
+ }
+ xyplot.setRenderer(deviationrenderer);
+
+ refreshData();
+
+ icyFrame.addToDesktopPane();
+ icyFrame.pack();
+ icyFrame.setSize(800, 600);
+ icyFrame.center();
+ icyFrame.toFront();
+ icyFrame.setVisible(true);
+
+ graphFrame.addToDesktopPane();
+ // graphFrame.center();
+ graphFrame.setVisible(true);
+ icyFrame.toFront();
+
+ extractCurrentDataGraphToExcelMenuItem.addActionListener(this);
+ extractAllDataToGraphAndExcelMenuItem.addActionListener(this);
+ // displayLegendCheckBoxMenuItem.addActionListener( this );
+ extractDataToProbabilityGridMenuItem.addActionListener(this);
+ extractCurrentDataGraphWithAllLabelDensityToExcelMenuItem.addActionListener(this);
+
+ JMenuBar menuBar = new JMenuBar();
+ JMenu menuExport = new JMenu("Export");
+ menuExport.add(extractCurrentDataGraphToExcelMenuItem);
+ menuExport.add(extractAllDataToGraphAndExcelMenuItem);
+ menuExport.add(extractDataToProbabilityGridMenuItem);
+ menuExport.add(extractCurrentDataGraphWithAllLabelDensityToExcelMenuItem);
+ menuBar.add(menuExport);
+
+ // JMenu menuGraph = new JMenu("Graph");
+ // menuGraph.add( displayLegendCheckBoxMenuItem );
+ // menuBar.add( menuGraph );
+
+ icyFrame.setJMenuBar(menuBar);
+
+ }
+
+ public void run()
+ {
+ // nothing here
+ }
+
+ /**
+ * refresh graphs
+ *
+ * @param file
+ */
+ void refreshGraph(boolean xlsExport, String file)
+ {
+
+ XlsManager xls = null;
+ int cursorX = 0;
+ int cursorY = 1;
+
+ if (xlsExport)
+ {
+ String saveFileName = file;
+ if (file == null)
+ {
+ saveFileName = SaveDialog.chooseFile("Export current graph to xls file",
+ System.getProperty("user.home"), "outputGraph.xls", ".xls");
+ if (saveFileName == null)
+ return;
+ }
+
+ try
+ {
+ xls = new XlsManager(new File(saveFileName));
+ xls.createNewPage("Mice profiler graph export");
+
+ }
+ catch (IOException e)
+ {
+
+ e.printStackTrace();
+ }
+ }
+
+ int binSize = Integer.parseInt(binSizeTextField.getText());
+ int endFrame = Integer.parseInt(totalTimeTextField.getText());
+ float fps = Float.parseFloat(fpsTextField.getText());
+
+ xyDataset.removeAllSeries();
+ yintervalseriescollection.removeAllSeries();
+
+ // creation des series:
+
+ // no pool
+
+ for (EventSelector eventSelector : eventSelectorList)
+ {
+
+ for (AnimalPoolSelector animalSelector : animalList)
+ {
+
+ if (animalSelector.noPool.isSelected())
+ {
+
+ if (animalSelector.enable.isSelected())
+ {
+
+ if (eventSelector.nbEventCheckBox.isSelected())
+ {
+ EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList
+ .get(eventSelector.eventNumber);
+ String titreSerie = animalSelector.animal.animalName + " np Event Nb"
+ + eventTimeLine.criteriaName;
+ XYSeries seriesXY = new XYSeries(titreSerie);
+
+ if (xlsExport)
+ {
+ cursorX++;
+ xls.setLabel(cursorX, 0, titreSerie);
+ cursorY = 1;
+ }
+
+ YIntervalSeries yintervalseries = new YIntervalSeries(
+ animalSelector.animal.animalName + " np Event Nb" + eventTimeLine.criteriaName);
+
+ for (int t = 0; t < endFrame; t += binSize)
+ {
+ double value = eventTimeLine.getNbEvent(t, t + binSize - 1);
+ yintervalseries.add(t / fps, value, value, value);
+
+ if (xlsExport)
+ {
+ xls.setNumber(0, cursorY, t / fps); // legende
+ xls.setNumber(cursorX, cursorY, value); // valeur
+ cursorY++;
+ }
+
+ }
+ yintervalseriescollection.addSeries(yintervalseries);
+
+ }
+
+ if (eventSelector.lengthCheckBox.isSelected())
+ {
+ EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList
+ .get(eventSelector.eventNumber);
+ XYSeries seriesXY = new XYSeries(
+ animalSelector.animal.animalName + " np Event l" + eventTimeLine.criteriaName);
+
+ String titreSerie = animalSelector.animal.animalName + " np Event l"
+ + eventTimeLine.criteriaName;
+ YIntervalSeries yintervalseries = new YIntervalSeries(titreSerie);
+
+ if (xlsExport)
+ {
+ cursorX++;
+ xls.setLabel(cursorX, 0, titreSerie);
+ cursorY = 1;
+ }
+
+ for (int t = 0; t < endFrame; t += binSize)
+ {
+ double value = eventTimeLine.getLengthEvent(t, t + binSize - 1);
+ yintervalseries.add(t / fps, value, value, value);
+
+ if (xlsExport)
+ {
+ xls.setNumber(0, cursorY, t / fps); // legende
+ xls.setNumber(cursorX, cursorY, value); // valeur
+ cursorY++;
+ }
+
+ }
+ yintervalseriescollection.addSeries(yintervalseries);
+
+ }
+
+ // critere discret
+ if (eventSelector.displayDiscreteValueCheckBox.isSelected())
+ {
+ EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList
+ .get(eventSelector.eventNumber);
+ XYSeries seriesXY = new XYSeries(
+ animalSelector.animal.animalName + " dv Event " + eventTimeLine.criteriaName);
+
+ String titreSerie = animalSelector.animal.animalName + " dv Event "
+ + eventTimeLine.criteriaName;
+
+ YIntervalSeries yintervalseries = new YIntervalSeries(titreSerie);
+
+ if (xlsExport)
+ {
+ cursorX++;
+ xls.setLabel(cursorX, 0, titreSerie);
+ cursorY = 1;
+ }
+
+ for (int t = 0; t < endFrame; t += binSize)
+ {
+
+ double value = eventTimeLine.getMeanValue(t, t + binSize - 1);
+ yintervalseries.add(t / fps, value, value, value);
+
+ if (xlsExport)
+ {
+ xls.setNumber(0, cursorY, t / fps); // legende
+ xls.setNumber(cursorX, cursorY, value); // valeur
+ cursorY++;
+ }
+
+ }
+ yintervalseriescollection.addSeries(yintervalseries);
+
+ }
+
+ // critere density
+ if (eventSelector.densityCheckBox.isSelected())
+ {
+
+ EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList
+ .get(eventSelector.eventNumber);
+ XYSeries seriesXY = new XYSeries(
+ animalSelector.animal.animalName + " dv Density " + eventTimeLine.criteriaName);
+
+ String titreSerie = animalSelector.animal.animalName + " dv Density "
+ + eventTimeLine.criteriaName;
+
+ YIntervalSeries yintervalseries = new YIntervalSeries(titreSerie);
+
+ if (xlsExport)
+ {
+ cursorX++;
+ xls.setLabel(cursorX, 0, titreSerie);
+ cursorY = 1;
+ }
+
+ for (int t = 0; t < endFrame; t += binSize)
+ {
+
+ double value = eventTimeLine.getDensity(t, t + binSize - 1);
+
+ yintervalseries.add(t / fps, value, value, value);
+
+ if (xlsExport)
+ {
+ xls.setNumber(0, cursorY, t / fps); // legende
+ xls.setNumber(cursorX, cursorY, value); // valeur
+ cursorY++;
+ }
+
+ }
+ yintervalseriescollection.addSeries(yintervalseries);
+
+ }
+
+ }
+ }
+ }
+
+ }
+
+ updateGraphSeriesForPool(Criteria.NB_EVENT, 1, endFrame, binSize, xls, xlsExport);
+ updateGraphSeriesForPool(Criteria.LENGTH_EVENT, 1, endFrame, binSize, xls, xlsExport);
+ updateGraphSeriesForPool(Criteria.DISCRETE_VALUE, 1, endFrame, binSize, xls, xlsExport);
+ updateGraphSeriesForPool(Criteria.DENSITY_VALUE, 1, endFrame, binSize, xls, xlsExport);
+ updateGraphSeriesForPool(Criteria.NB_EVENT, 2, endFrame, binSize, xls, xlsExport);
+ updateGraphSeriesForPool(Criteria.LENGTH_EVENT, 2, endFrame, binSize, xls, xlsExport);
+ updateGraphSeriesForPool(Criteria.DISCRETE_VALUE, 2, endFrame, binSize, xls, xlsExport);
+ updateGraphSeriesForPool(Criteria.DENSITY_VALUE, 2, endFrame, binSize, xls, xlsExport);
+
+ if (xlsExport)
+ {
+ // System.out.println( "xls debug: " + xls.getExcelPage() );
+ xls.SaveAndClose();
+ }
+
+ }
+
+ enum Criteria
+ {
+ NB_EVENT, LENGTH_EVENT, DISCRETE_VALUE, DENSITY_VALUE
+ }
+
+ void updateGraphSeriesForPool(Criteria criteria, int pool, int endFrame, int binSize, XlsManager xls,
+ boolean xlsExport)
+ {
+ int cursorX = 1;
+ int cursorY = 0;
+
+ float fps = Float.parseFloat(fpsTextField.getText());
+
+ boolean process = false;
+ for (AnimalPoolSelector animalSelector : animalList)
+ {
+ if ((pool == 1 && animalSelector.pool1.isSelected()) || (pool == 2 && animalSelector.pool2.isSelected()))
+ {
+ process = true;
+ }
+ }
+
+ if (!process)
+ return;
+
+ for (EventSelector eventSelector : eventSelectorList)
+ {
+ if ((criteria == Criteria.NB_EVENT && eventSelector.nbEventCheckBox.isSelected())
+ || (criteria == Criteria.LENGTH_EVENT && eventSelector.lengthCheckBox.isSelected())
+ || (criteria == Criteria.DISCRETE_VALUE && eventSelector.displayDiscreteValueCheckBox.isSelected())
+ || (criteria == Criteria.DENSITY_VALUE && eventSelector.densityCheckBox.isSelected()))
+ {
+
+ String chaine = "p" + pool + " " + criteria.toString();
+ chaine += animalList.get(0).animal.eventTimeLineList.get(eventSelector.eventNumber).criteriaName;
+ XYSeries seriesXY = new XYSeries(chaine);
+ YIntervalSeries yintervalseries = new YIntervalSeries(chaine);
+
+ if (xlsExport)
+ {
+ xls.createNewPage(chaine);
+ cursorX = 1;
+ }
+
+ for (int t = 0; t < endFrame; t += binSize)
+ {
+ if (xlsExport)
+ {
+ xls.setLabel(cursorX, cursorY, "" + t + "-" + (t + binSize));
+ cursorY++;
+ cursorY++;
+
+ }
+
+ // ROI3DArea r = new ROI3DArea( new Point3D.Double( 0,0,0 ) );
+
+ ArrayList<Double> listResultat = new ArrayList<Double>();
+
+ for (AnimalPoolSelector animalSelector : animalList)
+ {
+
+ if ((pool == 1 && animalSelector.pool1.isSelected())
+ || (pool == 2 && animalSelector.pool2.isSelected()))
+ {
+
+ if (animalSelector.enable.isSelected())
+ {
+ EventTimeLine eventTimeLine = animalSelector.animal.eventTimeLineList
+ .get(eventSelector.eventNumber);
+
+ if (criteria == Criteria.NB_EVENT)
+ {
+ listResultat.add(eventTimeLine.getNbEvent(t, t + binSize - 1));
+
+ if (xlsExport)
+ {
+ xls.setNumber(cursorX, cursorY, eventTimeLine.getNbEvent(t, t + binSize - 1));
+ cursorY++;
+ }
+
+ }
+ if (criteria == Criteria.LENGTH_EVENT)
+ {
+ listResultat.add(eventTimeLine.getLengthEvent(t, t + binSize - 1));
+
+ if (xlsExport)
+ {
+ xls.setNumber(cursorX, cursorY,
+ eventTimeLine.getLengthEvent(t, t + binSize - 1));
+ cursorY++;
+ }
+
+ }
+
+ if (criteria == Criteria.DISCRETE_VALUE)
+ {
+ listResultat.add(eventTimeLine.getMeanValue(t, t + binSize - 1));
+
+ if (xlsExport)
+ {
+ xls.setNumber(cursorX, cursorY, eventTimeLine.getMeanValue(t, t + binSize - 1));
+ cursorY++;
+ }
+
+ }
+ if (criteria == Criteria.DENSITY_VALUE)
+ {
+ listResultat.add(eventTimeLine.getDensity(t, t + binSize - 1));
+
+ if (xlsExport)
+ {
+ xls.setNumber(cursorX, cursorY, eventTimeLine.getDensity(t, t + binSize - 1));
+ cursorY++;
+ }
+
+ }
+
+ }
+ }
+ }
+
+ if (listResultat.size() != 0)
+ {
+ double[] resultatTab2 = new double[listResultat.size()];
+ for (int i = 0; i < listResultat.size(); i++)
+ {
+ resultatTab2[i] = listResultat.get(i);
+ }
+
+ double error = flanagan.analysis.Stat.standardDeviation(resultatTab2);
+ error = error / Math.sqrt(listResultat.size() - 1);
+ double mean = flanagan.analysis.Stat.mean(resultatTab2);
+
+ yintervalseries.add(t / fps, mean, mean - (error), mean + (error));
+
+ if (xlsExport)
+ {
+ cursorY++;
+ xls.setNumber(cursorX, cursorY, mean);
+ }
+
+ }
+ else
+ {
+ yintervalseries.add(t / fps, 0, 0, 0);
+ }
+
+ cursorX++;
+ cursorY = 0;
+ }
+
+ xyDataset.addSeries(seriesXY);
+
+ yintervalseriescollection.addSeries(yintervalseries);
+
+ }
+ }
+ }
+
+ /**
+ * Refresh Datas
+ */
+ private void refreshData()
+ {
+
+ mainPanel.removeAll();
+
+ JPanel animalPoolListPanel = GuiUtil.generatePanel("Animal pool List");
+ JPanel criteriaListPanel = GuiUtil.generatePanel("criteria List");
+
+ ArrayList<SwimmingObject> liste = Icy.getMainInterface().getSwimmingPool().getObjects();
+ animalList.clear();
+
+ Animal animalToGetCriteria = null;
+ for (SwimmingObject so : liste)
+ {
+ if (so.getObject() instanceof Animal)
+ {
+ animalList.add(new AnimalPoolSelector((Animal) so.getObject()));
+ animalToGetCriteria = (Animal) so.getObject();
+ }
+ }
+
+ if (animalToGetCriteria == null) // there is no more animal in pool
+ {
+ return;
+ }
+
+ for (AnimalPoolSelector animalSelector : animalList)
+ {
+ animalPoolListPanel.add(animalSelector.panel);
+ }
+
+ mainPanel.add(GuiUtil.besidesPanel(new JLabel("Bin Size ( nb frames )"), binSizeTextField,
+ new JLabel("Total time to compute ( nb frames )"), totalTimeTextField));
+ // mainPanel.add( GuiUtil.besidesPanel ( displayLegendCheckBox , extractAllDataToGraphAndExcelMenuItem , extractDataToProbabilityGridButton ) );
+ // mainPanel.add( GuiUtil.besidesPanel ( displayLegendCheckBox , extractDataToProbabilityGridMenuItem ) );
+ // mainPanel.add( GuiUtil.besidesPanel ( displayLegendCheckBoxMenuItem ) );
+
+ // mainPanel.add( GuiUtil.besidesPanel( new JLabel("time window forward:") , extractDataToProbabilityTimeValue , extractCurrentDataGraphToExcelMenuItem
+ // ) );
+ mainPanel.add(GuiUtil.besidesPanel(new JLabel("time window forward:"), extractDataToProbabilityTimeValue));
+ mainPanel.add(GuiUtil.besidesPanel(new JLabel("FPS:"), fpsTextField));
+
+ eventSelectorList = new ArrayList<EventSelector>();
+
+ for (EventTimeLine et : animalToGetCriteria.eventTimeLineList)
+ {
+ EventSelector eventSelector = new EventSelector(animalToGetCriteria.eventTimeLineList.indexOf(et), et);
+ eventSelectorList.add(eventSelector);
+
+ criteriaListPanel.add(eventSelector.panel);
+ }
+
+ JPanel parameterPanel = new JPanel(new BorderLayout());
+
+ JScrollPane animalPoolListScrollPane = new JScrollPane(animalPoolListPanel,
+ JScrollPane.VERTICAL_SCROLLBAR_ALWAYS, JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
+ JScrollPane criteriaListScrollPane = new JScrollPane(criteriaListPanel, JScrollPane.VERTICAL_SCROLLBAR_ALWAYS,
+ JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
+
+ parameterPanel.add(animalPoolListScrollPane, BorderLayout.WEST);
+ parameterPanel.add(criteriaListScrollPane, BorderLayout.CENTER);
+
+ mainPanel.add(parameterPanel);
+
+ graphFrame.getContentPane()
+ .add(new ChartPanel(chart, 700, 200, 700, 200, 700, 700, false, false, true, true, true, true));
+ graphFrame.pack();
+
+ refreshGraph(false, "");
+
+ mainPanel.updateUI();
+
+ }
+
+ @Override
+ public void swimmingPoolChangeEvent(SwimmingPoolEvent swimmingPoolEvent)
+ {
+
+ refreshData();
+
+ }
+
+ class EventSelector implements ActionListener
+ {
+ JPanel panel = GuiUtil.generatePanelWithoutBorder();
+ int eventNumber;
+ JCheckBox nbEventCheckBox = new JCheckBox("nb Event");
+ JCheckBox lengthCheckBox = new JCheckBox("length");
+ JCheckBox densityCheckBox = new JCheckBox("density");
+ JLabel criteriaLabel;
+ JCheckBox displayDiscreteValueCheckBox = new JCheckBox("discrete Value");
+
+ public EventSelector(int eventNumber, EventTimeLine e)
+ {
+ this.eventNumber = eventNumber;
+
+ int maxSizeString = e.criteriaName.length();
+ if (maxSizeString > 40)
+ maxSizeString = 40;
+
+ criteriaLabel = new JLabel(e.criteriaName.substring(0, maxSizeString));
+ criteriaLabel.setToolTipText(e.criteriaName);
+
+ if (e.timeLineCategory == TimeLineCategory.USE_BOOLEAN_EVENT)
+ {
+ panel.add(GuiUtil.besidesPanel(criteriaLabel, densityCheckBox, nbEventCheckBox, lengthCheckBox));
+ }
+
+ if (e.timeLineCategory == TimeLineCategory.USE_DISCRETE_EVENT)
+ {
+ panel.add(GuiUtil.besidesPanel(criteriaLabel, displayDiscreteValueCheckBox));
+ }
+
+ densityCheckBox.addActionListener(this);
+ nbEventCheckBox.addActionListener(this);
+ lengthCheckBox.addActionListener(this);
+ displayDiscreteValueCheckBox.addActionListener(this);
+
+ }
+
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ refreshGraph(false, "");
+ }
+
+ }
+
+ class AnimalPoolSelector implements ActionListener
+ {
+ JPanel panel = GuiUtil.generatePanelWithoutBorder();
+ Animal animal;
+
+ JCheckBox enable = new JCheckBox("Enable", true);
+ JRadioButton pool1 = new JRadioButton("Pool 1");
+ JRadioButton pool2 = new JRadioButton("Pool 2");
+ JRadioButton noPool = new JRadioButton("no pool", true);
+
+ ButtonGroup poolGroup = new ButtonGroup();
+ ButtonGroup carecterizationGroup = new ButtonGroup();
+
+ public AnimalPoolSelector(Animal animal)
+ {
+
+ this.animal = animal;
+
+ enable.addActionListener(this);
+ pool1.addActionListener(this);
+ pool2.addActionListener(this);
+ noPool.addActionListener(this);
+
+ poolGroup.add(pool1);
+ poolGroup.add(pool2);
+ poolGroup.add(noPool);
+
+ int maxSizeString = animal.animalName.length();
+ if (maxSizeString > 5)
+ maxSizeString = 5;
+
+ enable.setText(animal.animalName.substring(0, maxSizeString));
+ enable.setToolTipText(animal.animalName);
+
+ panel.add(GuiUtil.besidesPanel(new Component[] {
+
+ enable, pool1, pool2, noPool}
+
+ ));
+
+ }
+
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ refreshGraph(false, "");
+ }
+ }
+
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+
+ refreshGraph(false, "");
+
+ if (e.getSource() == extractCurrentDataGraphToExcelMenuItem)
+ {
+ extractCurrentDataGraphToExcel();
+ }
+
+ if (e.getSource() == extractAllDataToGraphAndExcelMenuItem)
+ {
+ exportAllData();
+ }
+
+ if (e.getSource() == extractDataToProbabilityGridMenuItem)
+ {
+ extractDataToProbabilityGrid2();
+ }
+
+ if (e.getSource() == extractCurrentDataGraphWithAllLabelDensityToExcelMenuItem)
+ {
+ extractDataGraphWithAllLabelDensityToExcel();
+ }
+
+ }
+
+ /**
+ * Extract all the data by selecting all the different criteria, one by one.
+ */
+ private void extractDataGraphWithAllLabelDensityToExcel()
+ {
+ String saveFileName = SaveDialog.chooseFile("Save xls file", "", "Mice Profiler - ");
+
+ if (saveFileName == null)
+ return;
+
+ for (EventSelector eventSelector : eventSelectorList)
+ {
+ for (EventSelector eventSelector2 : eventSelectorList) // clear all check boxes
+ {
+ eventSelector2.densityCheckBox.setSelected(false);
+ }
+
+ eventSelector.densityCheckBox.setSelected(true);
+
+ String eventLabel = eventSelector.criteriaLabel.getText().replaceAll("[^a-zA-Z0-9\\._]+", "_");
+ String fileName = saveFileName + " - " + eventLabel + ".xls";
+
+ refreshGraph(true, fileName);
+ }
+
+ }
+
+ private void extractCurrentDataGraphToExcel()
+ {
+
+ refreshGraph(true, null);
+
+ }
+
+ /**
+ * Extraction des grilles de proba de passage d'un etat a un autre sous feuille excel.
+ * Nouvelle version 2 (nov 2010)
+ */
+ private void extractDataToProbabilityGrid2()
+ {
+
+ System.out.println("export version nov 2010");
+
+ int timeWindow = Integer.parseInt(extractDataToProbabilityTimeValue.getText());
+ int offsetY = 3;
+ int offsetX = 1;
+
+ // XlsManager xls =null;
+ // try {
+ // xls = new XlsManager( System.getProperty("user.home") + "\\output "+(timeWindow-15)+"-"+timeWindow+"f.xls");
+ // } catch (IOException e) {
+ //
+ // e.printStackTrace();
+ // }
+
+ // JTextField startTextField = new JTextField("0");
+
+ ActionDialog actionDialog = new ActionDialog("Select parameters for tansition graph.");
+ JPanel mainPanel = new JPanel();
+ actionDialog.setPreferredSize(new Dimension(400, 400));
+ actionDialog.getMainPanel().add(new JScrollPane(mainPanel));
+ // actionDialog.getMainPanel().setLayout( new BoxLayout( actionDialog.getMainPanel() , BoxLayout.PAGE_AXIS ));
+ mainPanel.setLayout(new BoxLayout(mainPanel, BoxLayout.PAGE_AXIS));
+ animalList.get(0).animal.eventTimeLineList.size();
+
+ JTextField minProbability = new JTextField("0.3");
+ mainPanel.add(GuiUtil.createLineBoxPanel(new JLabel("Min probability: "), minProbability));
+ JTextField fpsTextField = new JTextField("15");
+ mainPanel.add(GuiUtil.createLineBoxPanel(new JLabel("FPS: "), fpsTextField));
+ JTextField maxNumberOfCandidateTextField = new JTextField("4");
+ mainPanel
+ .add(GuiUtil.createLineBoxPanel(new JLabel("Max number of ancestor: "), maxNumberOfCandidateTextField));
+ JCheckBox forceLocation = new JCheckBox("Force the location of the event in the graph (circular rendering)",
+ false);
+ mainPanel.add(GuiUtil.createLineBoxPanel(forceLocation));
+
+ HashMap<Integer, JCheckBox> selectedEventHashMap = new HashMap<Integer, JCheckBox>();
+
+ for (EventTimeLine event : animalList.get(0).animal.eventTimeLineList)
+ {
+ JCheckBox booleanField = new JCheckBox(event.criteriaName, true);
+ // actionDialog.getMainPanel().add( GuiUtil.createLineBoxPanel( booleanField ) );
+ mainPanel.add(GuiUtil.createLineBoxPanel(booleanField));
+ int index = animalList.get(0).animal.eventTimeLineList.indexOf(event);
+ selectedEventHashMap.put(index, booleanField);
+ if (index == 1)
+ booleanField.setSelected(false);
+ if (index >= 7 && index <= 10)
+ booleanField.setSelected(false);
+ if (index >= 13 && index <= 20)
+ booleanField.setSelected(false);
+ if (index >= 27)
+ booleanField.setSelected(false);
+
+ }
+ actionDialog.pack();
+ actionDialog.setLocationRelativeTo(null);
+ actionDialog.setVisible(true);
+
+ if (actionDialog.isCanceled())
+ return;
+
+ float fps = Float.parseFloat(fpsTextField.getText());
+ int MAX_NUMBER_OF_CANDIDATE = Integer.parseInt(maxNumberOfCandidateTextField.getText());
+
+ System.out.println("WARNING:");
+ System.out.println(
+ "This output consider all the loaded animal in the Label Analyser as coming from the same pool.");
+ System.out.println("i.e. only 1 pool is considered.");
+ System.out.println("version Jan 2013. p>0.1 instead of p>0.3");
+
+ int nbTotalDeCritere = animalList.get(0).animal.eventTimeLineList.size();
+
+ float poolProba0_4[][][] = new float[animalList.size()][nbTotalDeCritere][nbTotalDeCritere];
+ float poolProba4_8[][][] = new float[animalList.size()][nbTotalDeCritere][nbTotalDeCritere];
+
+ for (int animalNumber = 0; animalNumber < animalList.size(); animalNumber++)
+ {
+ Animal animal = animalList.get(animalNumber).animal;
+ // xls.createNewPage( animal.animalName );
+
+ // xls.setLabel( 0 , 0 , "se lit: event de la colonne x a une proba p d etre precede par ligne y");
+ // xls.setLabel( 0 , 1 , "timeforward(frames):" + (timeWindow-15) + " to " + timeWindow );
+ // xls.setLabel( 0 , 2 , "animal:" + animal.animalName );
+
+ // int FENETRE_RECHERCHE_FRAME = 15*3;
+ int FENETRE_RECHERCHE_FRAME = (int) (fps * 3);
+
+ for (int eventNumberSource = 0; eventNumberSource < animal.eventTimeLineList.size(); eventNumberSource++) // parcours la liste des events.
+ {
+
+ // xls.setNumber( 2*eventNumberSource+1 + offsetX, 0 + offsetY , eventNumberSource + 1 );
+
+ for (int eventNumberTarget = 0; eventNumberTarget < animal.eventTimeLineList
+ .size(); eventNumberTarget++) // parcours la liste des events.
+ {
+
+ // xls.setNumber( 0 + offsetX , eventNumberTarget+1 + offsetY , eventNumberTarget + 1 );
+ // xls.setLabel( 0 , eventNumberTarget+1 + offsetY , animalList.get( 0 ).animal.eventTimeLineList.get( eventNumberTarget ).criteriaName );
+
+ EventTimeLine eventTimeLineSource = animal.eventTimeLineList.get(eventNumberSource);
+ EventTimeLine eventTimeLineTarget = animal.eventTimeLineList.get(eventNumberTarget);
+
+ float nbEventSource04 = 0;
+ float nbEventTarget04 = 0;
+ float nbPassageSourceTargetOk04 = 0;
+ float nbPassageTargetSourceOk04 = 0;
+
+ for (EventCriteria eventCriteriaSource : eventTimeLineSource.eventList)
+ {
+ if (eventCriteriaSource.startFrame > 3600)
+ continue;
+ nbEventSource04++;
+
+ for (EventCriteria eventCriteriaTarget : eventTimeLineTarget.eventList)
+ {
+ if (eventCriteriaTarget.startFrame > 3600)
+ continue;
+
+ if (eventCriteriaTarget.startFrame >= eventCriteriaSource.endFrame
+ && eventCriteriaTarget.startFrame <= eventCriteriaSource.endFrame
+ + FENETRE_RECHERCHE_FRAME)
+ {
+ nbPassageSourceTargetOk04++;
+ break;
+ }
+ }
+ }
+
+ for (EventCriteria eventCriteriaTarget : eventTimeLineTarget.eventList)
+ {
+ if (eventCriteriaTarget.startFrame > 3600)
+ continue;
+ nbEventTarget04++;
+
+ for (EventCriteria eventCriteriaSource : eventTimeLineSource.eventList)
+ {
+ if (eventCriteriaSource.startFrame > 3600)
+ continue;
+ if (eventCriteriaTarget.startFrame >= eventCriteriaSource.endFrame
+ && eventCriteriaTarget.startFrame <= eventCriteriaSource.endFrame
+ + FENETRE_RECHERCHE_FRAME)
+ {
+ nbPassageTargetSourceOk04++;
+ break;
+ }
+ }
+ }
+
+ float probaStoT04 = nbPassageSourceTargetOk04 / nbEventSource04;
+ float probaTtoS04 = nbPassageTargetSourceOk04 / nbEventTarget04;
+ float proba2Way04 = probaStoT04 * probaTtoS04;
+
+ float nbEventSource48 = 0;
+ float nbEventTarget48 = 0;
+ float nbPassageSourceTargetOk48 = 0;
+ float nbPassageTargetSourceOk48 = 0;
+
+ for (EventCriteria eventCriteriaSource : eventTimeLineSource.eventList)
+ {
+ if (eventCriteriaSource.startFrame < 3600)
+ continue;
+ nbEventSource48++;
+
+ for (EventCriteria eventCriteriaTarget : eventTimeLineTarget.eventList)
+ {
+ if (eventCriteriaTarget.startFrame < 3600)
+ continue;
+
+ if (eventCriteriaTarget.startFrame >= eventCriteriaSource.endFrame
+ && eventCriteriaTarget.startFrame <= eventCriteriaSource.endFrame
+ + FENETRE_RECHERCHE_FRAME)
+ {
+ nbPassageSourceTargetOk48++;
+ break;
+ }
+ }
+ }
+
+ for (EventCriteria eventCriteriaTarget : eventTimeLineTarget.eventList)
+ {
+ if (eventCriteriaTarget.startFrame < 3600)
+ continue;
+ nbEventTarget48++;
+
+ for (EventCriteria eventCriteriaSource : eventTimeLineSource.eventList)
+ {
+ if (eventCriteriaSource.startFrame < 3600)
+ continue;
+ if (eventCriteriaTarget.startFrame >= eventCriteriaSource.endFrame
+ && eventCriteriaTarget.startFrame <= eventCriteriaSource.endFrame
+ + FENETRE_RECHERCHE_FRAME)
+ {
+ nbPassageTargetSourceOk48++;
+ break;
+ }
+ }
+ }
+
+ float probaStoT48 = nbPassageSourceTargetOk48 / nbEventSource48;
+ float probaTtoS48 = nbPassageTargetSourceOk48 / nbEventTarget48;
+ float proba2Way48 = probaStoT48 * probaTtoS48;
+
+ if (eventNumberSource != 9 && eventNumberSource != 10 && eventNumberTarget != 9
+ && eventNumberTarget != 10) // enleve le speed
+ {
+ poolProba0_4[animalNumber][eventNumberSource][eventNumberTarget] = proba2Way04;
+ poolProba4_8[animalNumber][eventNumberSource][eventNumberTarget] = proba2Way48;
+ }
+
+ }
+ }
+
+ }
+
+ float meanAnimalProba0_4[][] = new float[nbTotalDeCritere][nbTotalDeCritere];
+ float stddevAnimalProba0_4[][] = new float[nbTotalDeCritere][nbTotalDeCritere];
+ float meanAnimalProba4_8[][] = new float[nbTotalDeCritere][nbTotalDeCritere];
+ float stddevAnimalProba4_8[][] = new float[nbTotalDeCritere][nbTotalDeCritere];
+
+ for (int eventNumberSource = 0; eventNumberSource < nbTotalDeCritere; eventNumberSource++) // parcours la liste des events.
+ {
+ for (int eventNumberTarget = 0; eventNumberTarget < nbTotalDeCritere; eventNumberTarget++) // parcours la liste des events.
+ {
+ float[] tabProba = new float[animalList.size()];
+ for (int animalNumber = 0; animalNumber < animalList.size(); animalNumber++)
+ {
+ tabProba[animalNumber] = poolProba0_4[animalNumber][eventNumberSource][eventNumberTarget];
+ meanAnimalProba0_4[eventNumberSource][eventNumberTarget] += poolProba0_4[animalNumber][eventNumberSource][eventNumberTarget];
+
+ }
+ meanAnimalProba0_4[eventNumberSource][eventNumberTarget] /= animalList.size();
+ stddevAnimalProba0_4[eventNumberSource][eventNumberTarget] = flanagan.analysis.Stat
+ .standardDeviation(tabProba);
+ ;
+ }
+ }
+
+ for (int eventNumberSource = 0; eventNumberSource < nbTotalDeCritere; eventNumberSource++) // parcours la liste des events.
+ {
+ for (int eventNumberTarget = 0; eventNumberTarget < nbTotalDeCritere; eventNumberTarget++) // parcours la liste des events.
+ {
+ float[] tabProba = new float[animalList.size()];
+ for (int animalNumber = 0; animalNumber < animalList.size(); animalNumber++)
+ {
+ tabProba[animalNumber] = poolProba4_8[animalNumber][eventNumberSource][eventNumberTarget];
+ meanAnimalProba4_8[eventNumberSource][eventNumberTarget] += poolProba4_8[animalNumber][eventNumberSource][eventNumberTarget];
+
+ }
+ meanAnimalProba4_8[eventNumberSource][eventNumberTarget] /= animalList.size();
+ stddevAnimalProba4_8[eventNumberSource][eventNumberTarget] = flanagan.analysis.Stat
+ .standardDeviation(tabProba);
+ ;
+ }
+ }
+
+ ArrayList<ArrayList<EventResult>> resultatParSource0_4 = new ArrayList<ArrayList<EventResult>>();
+ ArrayList<ArrayList<EventResult>> resultatParSource4_8 = new ArrayList<ArrayList<EventResult>>();
+
+ // int MAX_NUMBER_OF_CANDIDATE = 4; // was 4
+
+ {
+ for (int nbEventTarget = 0; nbEventTarget < nbTotalDeCritere; nbEventTarget++)
+ {
+ ArrayList<EventResult> eventResultList = new ArrayList<EventResult>();
+ for (int nbEventSource = 0; nbEventSource < nbTotalDeCritere; nbEventSource++)
+ {
+ JCheckBox eTarget = selectedEventHashMap.get(nbEventTarget);
+ JCheckBox eSource = selectedEventHashMap.get(nbEventSource);
+ if (!eTarget.isSelected() || !eSource.isSelected())
+ continue;
+
+ /*
+ * if ( nbEventTarget == 1 || nbEventSource == 1 ) continue;
+ * if ( nbEventTarget == 7 || nbEventSource == 7 ) continue;
+ * if ( nbEventTarget == 8 || nbEventSource == 8 ) continue;
+ * if ( nbEventTarget == 9 || nbEventSource == 9 ) continue;
+ * if ( nbEventTarget == 10 || nbEventSource == 10 ) continue;
+ * if ( nbEventTarget == 13 || nbEventSource == 13 ) continue;
+ * if ( nbEventTarget == 14 || nbEventSource == 14 ) continue;
+ * if ( nbEventTarget == 15 || nbEventSource == 15 ) continue;
+ * if ( nbEventTarget == 16 || nbEventSource == 16 ) continue;
+ * if ( nbEventTarget == 17 || nbEventSource == 17 ) continue;
+ * if ( nbEventTarget == 18 || nbEventSource == 18 ) continue;
+ * if ( nbEventTarget == 19 || nbEventSource == 19 ) continue;
+ * if ( nbEventTarget == 20 || nbEventSource == 20 ) continue;
+ * if ( nbEventTarget >= 27 || nbEventSource >= 27 ) continue;
+ */
+
+ float probaProposee = meanAnimalProba0_4[nbEventSource][nbEventTarget];
+ float stddevPropose = stddevAnimalProba0_4[nbEventSource][nbEventTarget];
+
+ ArrayList<EventResult> eventResultListClone = (ArrayList<EventResult>) eventResultList.clone();
+
+ for (EventResult resultClient : eventResultListClone)
+ {
+ if (resultClient.proba < probaProposee)
+ {
+ eventResultList.remove(resultClient);
+ break;
+ }
+ }
+
+ if (eventResultList.size() < MAX_NUMBER_OF_CANDIDATE)
+ {
+ EventResult result = new EventResult(nbEventSource, nbEventTarget, probaProposee, stddevPropose,
+ "red");
+ eventResultList.add(result);
+ }
+
+ }
+ resultatParSource0_4.add(eventResultList);
+
+ }
+ }
+
+ {
+
+ for (int nbEventTarget = 0; nbEventTarget < nbTotalDeCritere; nbEventTarget++)
+ {
+ ArrayList<EventResult> eventResultList = new ArrayList<EventResult>();
+ for (int nbEventSource = 0; nbEventSource < nbTotalDeCritere; nbEventSource++)
+ {
+ JCheckBox eTarget = selectedEventHashMap.get(nbEventTarget);
+ JCheckBox eSource = selectedEventHashMap.get(nbEventSource);
+ if (!eTarget.isSelected() || !eSource.isSelected())
+ continue;
+ //
+ // if ( nbEventTarget == 1 || nbEventSource == 1 ) continue;
+ // if ( nbEventTarget == 7 || nbEventSource == 7 ) continue;
+ // if ( nbEventTarget == 8 || nbEventSource == 8 ) continue;
+ // if ( nbEventTarget == 9 || nbEventSource == 9 ) continue;
+ // if ( nbEventTarget == 10 || nbEventSource == 10 ) continue;
+ // if ( nbEventTarget == 13 || nbEventSource == 13 ) continue;
+ // if ( nbEventTarget == 14 || nbEventSource == 14 ) continue;
+ // if ( nbEventTarget == 15 || nbEventSource == 15 ) continue;
+ // if ( nbEventTarget == 16 || nbEventSource == 16 ) continue;
+ // if ( nbEventTarget == 17 || nbEventSource == 17 ) continue;
+ // if ( nbEventTarget == 18 || nbEventSource == 18 ) continue;
+ // if ( nbEventTarget == 19 || nbEventSource == 19 ) continue;
+ // if ( nbEventTarget == 20 || nbEventSource == 20 ) continue;
+ // if ( nbEventTarget >= 27 || nbEventSource >= 27 ) continue;
+
+ float probaProposee = meanAnimalProba4_8[nbEventSource][nbEventTarget];
+ float stddevPropose = stddevAnimalProba4_8[nbEventSource][nbEventTarget];
+
+ ArrayList<EventResult> eventResultListClone = (ArrayList<EventResult>) eventResultList.clone();
+
+ for (EventResult resultClient : eventResultListClone)
+ {
+ if (resultClient.proba < probaProposee)
+ {
+ eventResultList.remove(resultClient);
+ break;
+ }
+ }
+
+ if (eventResultList.size() < MAX_NUMBER_OF_CANDIDATE)
+ {
+ EventResult result = new EventResult(nbEventSource, nbEventTarget, probaProposee, stddevPropose,
+ "green");
+ eventResultList.add(result);
+ }
+
+ }
+ resultatParSource4_8.add(eventResultList);
+
+ }
+ }
+
+ // GRAPH:
+
+ boolean FORCE_LOCATION = forceLocation.isSelected();
+
+ System.out.println("Put the following script in GraphViz:");
+ if (FORCE_LOCATION)
+ {
+ System.out.println("/* @command = neato **/");
+ }
+ System.out.println("digraph {");
+ System.out.println("splines=true;");
+
+ // set the location of each available event
+
+ if (FORCE_LOCATION)
+ {
+ double x = 0;
+ double y = 0;
+ double angle = 0;
+
+ for (int eventIndex = 0; eventIndex < nbTotalDeCritere; eventIndex++)
+ {
+ JCheckBox eventBox = selectedEventHashMap.get(eventIndex);
+ if (!eventBox.isSelected())
+ continue;
+ //
+ // if( eventIndex == 1 ) continue;
+ // if( eventIndex == 7 ) continue;
+ // if( eventIndex == 8 ) continue;
+ // if( eventIndex == 9 ) continue;
+ // if( eventIndex == 10 ) continue;
+ // if( eventIndex == 13 ) continue;
+ // if( eventIndex == 14 ) continue;
+ // if( eventIndex == 15 ) continue;
+ // if( eventIndex == 16 ) continue;
+ // if( eventIndex == 17 ) continue;
+ // if( eventIndex == 18 ) continue;
+ // if( eventIndex == 19 ) continue;
+ // if( eventIndex == 20 ) continue;
+ // if( eventIndex >= 27 ) continue;
+
+ x = 300 + Math.cos(angle) * 300;
+ y = 300 + Math.sin(angle) * 300;
+
+ String criteriaName = animalList.get(0).animal.eventTimeLineList.get(eventIndex).criteriaName;
+ // criteriaName = keepFirstChars(criteriaName);
+
+ String result = "\"" + criteriaName + "\"";
+ result += "[";
+ result += " pos=\"" + x + "," + y + "!" + "\" ";
+ result += " shape=\"box\" ";
+ result += " width=\"2\" ";
+ result += "]";
+
+ System.out.println(result);
+
+ angle += (Math.PI * 2d) / 14d;
+
+ // x+=200;
+ // if ( x > 100 )
+ // {
+ // y+=100;
+ // x=0;
+ // }
+
+ }
+
+ }
+
+ // animalList.get( 0 ).animal.eventTimeLineList.get( eventSource ).criteriaName
+
+ // create graph
+
+ for (int sourceList = 0; sourceList < nbTotalDeCritere; sourceList++)
+ {
+ ArrayList<EventResult> eventResultList0_4 = resultatParSource0_4.get(sourceList);
+ ArrayList<EventResult> eventResultList4_8 = resultatParSource4_8.get(sourceList);
+
+ ArrayList<EventResult> finalResult = createCommonList(eventResultList0_4, eventResultList4_8);
+
+ for (EventResult eventResult : finalResult)
+ {
+ if (eventResult.enable)
+ {
+ if (eventResult.proba >= 0.1f) // was 0.3f
+ {
+ System.out.println(eventResult);
+ }
+ else
+ {
+
+ }
+ }
+ }
+
+ }
+
+ System.out.println("}");
+
+ // xls.SaveAndClose();
+
+ }
+
+ ArrayList<EventResult> createCommonList(ArrayList<EventResult> eventResultList0_4,
+ ArrayList<EventResult> eventResultList4_8)
+ {
+ ArrayList<EventResult> finalResult = new ArrayList<EventResult>();
+ for (EventResult eventResult0_4 : eventResultList0_4)
+ {
+ finalResult.add(eventResult0_4);
+ }
+ for (EventResult eventResult4_8 : eventResultList4_8)
+ {
+ finalResult.add(eventResult4_8);
+ }
+
+ for (EventResult eventResultA : finalResult)
+ {
+ for (EventResult eventResultB : finalResult)
+ {
+ if (eventResultA != eventResultB && eventResultA.enable && eventResultB.enable
+ && eventResultA.eventSource == eventResultB.eventSource
+ && eventResultA.eventTarget == eventResultB.eventTarget
+ && checkIfProbaOverlap(eventResultA, eventResultB))
+ {
+ eventResultA.proba = (eventResultA.proba + eventResultB.proba) / 2f;
+ eventResultB.enable = false;
+ eventResultA.color = "black";
+ }
+
+ }
+ }
+
+ return finalResult;
+ }
+
+ private boolean checkIfProbaOverlap(EventResult eventResultA, EventResult eventResultB)
+ {
+ float sigma = 1f;
+
+ float borneMinA = eventResultA.proba - eventResultA.stddev * sigma;
+ float borneMaxA = eventResultA.proba + eventResultA.stddev * sigma;
+
+ float borneMinB = eventResultB.proba - eventResultB.stddev * sigma;
+ float borneMaxB = eventResultB.proba + eventResultB.stddev * sigma;
+
+ if (borneMinA > borneMinB && borneMinA < borneMaxB)
+ return true;
+ if (borneMaxA > borneMinB && borneMaxA < borneMaxB)
+ return true;
+
+ return false;
+ }
+
+ class ProbaResult
+ {
+ public ProbaResult(float proba, float stddev, int startFrame)
+ {
+ this.stddev = stddev;
+ this.proba = proba;
+ this.startFrame = startFrame;
+ }
+
+ float stddev;
+ float proba;
+ int startFrame;
+ }
+
+ class EventResult
+ {
+ boolean enable = true;
+
+ public EventResult(int eventSource, int eventTarget, float proba, float stddev, String color)
+ {
+ this.eventSource = eventSource;
+ this.eventTarget = eventTarget;
+ this.stddev = stddev;
+ this.proba = proba;
+ this.color = color;
+ }
+
+ float stddev;
+ int eventSource;
+ int eventTarget;
+ float proba;
+ String color;
+
+ @Override
+ public String toString()
+ {
+
+ String result = "";
+ result += "\"" + keepFirstChars(animalList.get(0).animal.eventTimeLineList.get(eventSource).criteriaName)
+ + "\"";
+ result += "->";
+ result += "\"" + keepFirstChars(animalList.get(0).animal.eventTimeLineList.get(eventTarget).criteriaName)
+ + "\"";
+ result += " ";
+ result += "[ ";
+ result += "color=\"" + color + "\"";
+ result += " style=\"setlinewidth(" + proba * 5 + ")\"]";
+ result += ";";
+
+ return result;
+ }
+
+ /**
+ * Just provide the name of events. Without link.
+ *
+ * @return
+ */
+ public String getEvents()
+ {
+ String result = "";
+ result += "\"" + keepFirstChars(animalList.get(0).animal.eventTimeLineList.get(eventSource).criteriaName)
+ + "\"";
+ result += ";";
+ result += "\"" + keepFirstChars(animalList.get(0).animal.eventTimeLineList.get(eventTarget).criteriaName)
+ + "\"";
+ result += ";";
+ return result;
+ }
+
+ }
+
+ public static String keepFirstChars(String s)
+ {
+ int MAXSIZE = 20;
+ if (s.length() > MAXSIZE)
+ s = (String) s.substring(0, MAXSIZE);
+ return s;
+ }
+
+ void exportAllData()
+ {
+ System.out.println("export all data in pool to excel.");
+
+ // export pool 1
+
+ // String saveFileName = SaveDialog.chooseFile("Export all data to xls file", System.getProperty("user.home") ,"output.xls", ".xls");
+
+ JTextField startTextField = new JTextField("0");
+ JTextField endTextField = new JTextField("8");
+
+ ActionDialog actionDialog = new ActionDialog("Select range (in minutes)");
+ actionDialog.getMainPanel().setLayout(new BoxLayout(actionDialog.getMainPanel(), BoxLayout.PAGE_AXIS));
+ actionDialog.getMainPanel().add(GuiUtil.createLineBoxPanel(new JLabel("start (minutes)"), startTextField));
+ actionDialog.getMainPanel().add(GuiUtil.createLineBoxPanel(new JLabel("end (minutes)"), endTextField));
+ actionDialog.pack();
+ actionDialog.setLocationRelativeTo(null);
+ actionDialog.setVisible(true);
+
+ if (actionDialog.isCanceled())
+ return;
+
+ float startMinute = Float.parseFloat(startTextField.getText());
+ float endMinute = Float.parseFloat(endTextField.getText());
+
+ String saveFileName = SaveDialog.chooseFile("Save xls file", "", "Mice Profiler - all data", ".xls");
+
+ if (saveFileName == null)
+ return;
+ XlsManager xls = null;
+
+ try
+ {
+
+ xls = new XlsManager(saveFileName);
+ xls.createNewPage("Data in pool");
+
+ }
+ catch (IOException e)
+ {
+
+ e.printStackTrace();
+ }
+
+ xls.createNewPage("Results");
+
+ int cursorY = 0;
+
+ for (EventSelector eventSelector : eventSelectorList)
+ {
+ String eventTitle = animalList.get(0).animal.eventTimeLineList.get(eventSelector.eventNumber).criteriaName;
+
+ xls.setLabel(0, cursorY, "Event #" + eventSelector.eventNumber, Colour.YELLOW);
+ cursorY++;
+ xls.setLabel(0, cursorY, eventTitle);
+ cursorY += 2;
+
+ cursorY = exportXLSPool(1, eventSelector, cursorY, xls, startMinute, endMinute);
+ cursorY += 3;
+ cursorY = exportXLSPool(2, eventSelector, cursorY, xls, startMinute, endMinute);
+ cursorY += 4;
+ }
+
+ xls.SaveAndClose();
+
+ }
+
+ int exportXLSPool(int pool, EventSelector eventSelector, int cursorY, XlsManager xls, float startMinute,
+ float endMinute)
+ {
+ float halfMinute = (endMinute + startMinute) / 2f;
+
+ xls.setLabel(0, cursorY, "p" + pool);
+ // xls.setLabel( 1, cursorY, "nb e 0-4" );
+ xls.setLabel(1, cursorY, "nb event from " + startMinute + " to " + halfMinute + " minutes");
+ // xls.setLabel( 2, cursorY, "nb e 4-8" );
+ xls.setLabel(2, cursorY, "nb event from " + halfMinute + " to " + endMinute + " minutes");
+ // xls.setLabel( 3, cursorY, "nb e 0-8" );
+ xls.setLabel(3, cursorY, "nb event from " + startMinute + " to " + endMinute + " minutes");
+
+ // xls.setLabel( 4, cursorY, "l e 0-4" );
+ xls.setLabel(4, cursorY, "length of event from " + startMinute + " to " + halfMinute + " minutes");
+ // xls.setLabel( 5, cursorY, "l e 4-8" );
+ xls.setLabel(5, cursorY, "length of event from " + halfMinute + " to " + endMinute + " minutes");
+ // xls.setLabel( 6, cursorY, "l e 0-8" );
+ xls.setLabel(6, cursorY, "length of event from " + startMinute + " to " + endMinute + " minutes");
+
+ float fps = Float.parseFloat(fpsTextField.getText());
+
+ cursorY++;
+
+ for (AnimalPoolSelector animalSelector : animalList)
+ {
+ if (pool == 1 && animalSelector.pool1.isSelected() || pool == 2 && animalSelector.pool2.isSelected())
+ {
+ if (animalSelector.enable.isSelected())
+ {
+ xls.setLabel(0, cursorY, animalSelector.animal.animalName);
+
+ Animal animal = animalSelector.animal;
+ EventTimeLine eventTimeLine = animal.eventTimeLineList.get(eventSelector.eventNumber);
+
+ // boolean debug = false;
+
+ // nb event e 0-4 le
+ // if ( debug ) System.out.println("0-4");
+ {
+ int nb = 0;
+ int length = 0;
+
+ // int maxTime = (int) (4*60*fps);
+ int maxTime = (int) (halfMinute * 60 * fps);
+ int minTime = (int) (startMinute * 60 * fps);
+
+ for (EventCriteria event : eventTimeLine.eventList)
+ {
+ if (event.startFrame < maxTime && event.startFrame >= minTime)
+ {
+ nb++;
+ length += event.getLength();
+ // if ( debug )
+ // {
+ // System.out.println( eventTimeLine.eventList.indexOf( event ) + ">" + event.getLength() );
+ // }
+ }
+ }
+ xls.setNumber(1, cursorY, nb);
+ xls.setNumber(4, cursorY, length);
+ // if ( debug )
+ // {
+ // System.out.println( "nb event"+nb );
+ // System.out.println( "length event"+length );
+ // }
+
+ }
+
+ // nb event e 4-8 le
+ // if ( debug ) System.out.println("4-8");
+ {
+ int nb = 0;
+ int length = 0;
+
+ // int minTime = (int)(4d*60d*fps);
+ int minTime = (int) (halfMinute * 60d * fps);
+ int maxTime = (int) (endMinute * 60 * fps);
+ for (EventCriteria event : eventTimeLine.eventList)
+ {
+ if (event.startFrame < maxTime && event.startFrame > minTime)
+ {
+ nb++;
+ length += event.getLength();
+ // if ( debug )
+ // {
+ // System.out.println( eventTimeLine.eventList.indexOf( event ) + ">" + event.getLength() );
+ // }
+ }
+ }
+ xls.setNumber(2, cursorY, nb);
+ xls.setNumber(5, cursorY, length);
+ // if ( debug )
+ // {
+ // System.out.println( "nb event"+nb );
+ // System.out.println( "length event"+length );
+ // }
+
+ }
+
+ // nb event e 0-8 le
+ // if ( debug ) System.out.println("0-8");
+ {
+ int nb = 0;
+ int length = 0;
+ int minTime = (int) (startMinute * 60d * fps);
+ // int maxTime = (int) (8*60*fps);
+ int maxTime = (int) (endMinute * 60 * fps);
+ for (EventCriteria event : eventTimeLine.eventList)
+ {
+ if (event.startFrame < maxTime && event.startFrame > minTime)
+ {
+ nb++;
+ length += event.getLength();
+ // if ( debug )
+ // {
+ // System.out.println( eventTimeLine.eventList.indexOf( event ) + ">" + event.getLength() );
+ // }
+ }
+ }
+ xls.setNumber(3, cursorY, nb);
+ xls.setNumber(6, cursorY, length);
+ // if ( debug )
+ // {
+ // System.out.println( "nb event"+nb );
+ // System.out.println( "length event"+length );
+ // }
+
+ }
+
+ cursorY++;
+
+ }
+ }
+ }
+ return cursorY;
+ }
+
+}
\ No newline at end of file
diff --git a/src/main/java/plugins/fab/MiceProfiler/MiceProfilerVideoLabelMaker.java b/src/main/java/plugins/fab/MiceProfiler/MiceProfilerVideoLabelMaker.java
index 1ac656dbe67880cc3a243a02cca771f44e2f72f8..e48ecbad706b9eb75f0043ee798eed8aabcb3f26 100644
--- a/src/main/java/plugins/fab/MiceProfiler/MiceProfilerVideoLabelMaker.java
+++ b/src/main/java/plugins/fab/MiceProfiler/MiceProfilerVideoLabelMaker.java
@@ -18,5383 +18,25 @@
*/
package plugins.fab.MiceProfiler;
-import java.awt.BasicStroke;
-import java.awt.BorderLayout;
-import java.awt.Color;
-import java.awt.Dimension;
-import java.awt.Font;
-import java.awt.Graphics;
-import java.awt.Graphics2D;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.KeyEvent;
-import java.awt.event.KeyListener;
-import java.awt.event.MouseEvent;
-import java.awt.event.MouseListener;
-import java.awt.event.MouseMotionListener;
-import java.awt.geom.Ellipse2D;
-import java.awt.geom.Point2D;
-import java.awt.image.BufferedImage;
-import java.io.File;
-import java.io.FileNotFoundException;
-import java.io.IOException;
-import java.lang.reflect.Field;
-import java.text.DecimalFormat;
-import java.util.ArrayList;
-import java.util.Collections;
-import java.util.HashMap;
-import java.util.Iterator;
-import java.util.Scanner;
-import java.util.prefs.Preferences;
+import icy.plugin.abstract_.PluginActionable;
-import javax.imageio.ImageIO;
-import javax.swing.BoxLayout;
-import javax.swing.ImageIcon;
-import javax.swing.JButton;
-import javax.swing.JCheckBox;
-import javax.swing.JFileChooser;
-import javax.swing.JLabel;
-import javax.swing.JMenu;
-import javax.swing.JMenuBar;
-import javax.swing.JMenuItem;
-import javax.swing.JPanel;
-import javax.swing.JScrollPane;
-import javax.swing.JTextField;
-import javax.swing.SwingConstants;
-import javax.xml.xpath.XPath;
-import javax.xml.xpath.XPathConstants;
-import javax.xml.xpath.XPathExpressionException;
-import javax.xml.xpath.XPathFactory;
-
-import org.jfree.chart.ChartFactory;
-import org.jfree.chart.ChartPanel;
-import org.jfree.chart.JFreeChart;
-import org.jfree.chart.plot.PlotOrientation;
-import org.jfree.data.xy.XYSeries;
-import org.jfree.data.xy.XYSeriesCollection;
-import org.jfree.data.xy.YIntervalSeriesCollection;
-import org.w3c.dom.Document;
-import org.w3c.dom.Element;
-import org.w3c.dom.NodeList;
-
-import icy.file.FileUtil;
-import icy.file.Loader;
-import icy.file.Saver;
-import icy.file.xls.XlsManager;
-import icy.gui.dialog.MessageDialog;
-import icy.gui.frame.IcyFrame;
-import icy.gui.frame.progress.AnnounceFrame;
-import icy.gui.frame.progress.ToolTipFrame;
-import icy.gui.util.FontUtil;
-import icy.gui.util.GuiUtil;
-import icy.image.IcyBufferedImage;
-import icy.image.IcyBufferedImageUtil;
-import icy.main.Icy;
-import icy.plugin.abstract_.Plugin;
-import icy.plugin.interface_.PluginBundled;
-import icy.plugin.interface_.PluginImageAnalysis;
-import icy.sequence.Sequence;
-import icy.swimmingPool.SwimmingObject;
-import icy.type.DataType;
-import icy.util.XLSUtil;
-import icy.util.XMLUtil;
-import jxl.Sheet;
-import jxl.Workbook;
-import jxl.read.biff.BiffException;
-import jxl.write.WritableSheet;
-import jxl.write.WritableWorkbook;
-import jxl.write.WriteException;
-
-public class MiceProfilerVideoLabelMaker extends Plugin implements PluginImageAnalysis, PluginBundled,ActionListener, KeyListener
+/**
+ * Just for backward compatibility (plugin is now bundled in Mice Profiler Tracker)
+ */
+public class MiceProfilerVideoLabelMaker extends PluginActionable
{
+ final MiceProfilerVideoLabelMakerInternal implementer;
- JPanel mainPanel = new JPanel();
- IcyFrame mainFrame = new IcyFrame("Video Label Maker", true, true, true, true);
- JMenuBar menuBar = new JMenuBar();
- JMenuItem openFileMenuItem = new JMenuItem("Open XML File...");
- JMenuItem compileImageFileMenuItem = new JMenuItem("Compile image files from a list of file...");
- JMenuItem mergeHeatMapMenuItem = new JMenuItem("Stitch heatmap files...");
-
- JScrollPane scrollPane = new JScrollPane(mainPanel);
- JPanel setupPanel = GuiUtil.generatePanel("Setup");
- JLabel legendLabel = new JLabel("Legend", JLabel.CENTER);
- JTextField scaleTextField = new JTextField("0.22");
- JTextField scaleVideoTextField = new JTextField("1");
-
- int START_MINUTE = 0;
- int NB_MINUTE = 8;
-
- float SEUIL_DISTANCE_1 = 22;
- float SEUIL_DISTANCE_2 = 40;
- float SEUIL_DISTANCE_HEAD_HEAD = 15;
- float SEUIL_DISTANCE_HEAD_GENITAL = 15;
- float SEUIL_SIDE = 12;
- float SPEED_THRESHOLD_1 = (float) 0.5f;
- float SPEED_THRESHOLD_2 = 2;
- float SPEED_THRESHOLD_3 = 4;
- float FPS = 15f;
- float LOAD_FRAME_START = 0f;
- float LOAD_FRAME_END = 10000000f;
- float SCALE = 0.22f;
-
- JTextField distance1TextField = new JTextField();
- JTextField distance2TextField = new JTextField();
- JTextField distanceHeadHeadTextField = new JTextField();
- JTextField distanceHeadGenitalTextField = new JTextField();
- JTextField seuilSideTextField = new JTextField();
- JTextField speed_threshold1TextField = new JTextField();
- JTextField speed_threshold2TextField = new JTextField();
- JTextField speed_threshold3TextField = new JTextField();
- JTextField fpsTextField = new JTextField();
- // JTextField loadFrameStartTextField = new JTextField();
- // JTextField loadFrameEndTextField = new JTextField();
- JTextField computeImageStartMinuteTextField = new JTextField();
- JTextField computeImageNbMinuteTextField = new JTextField();
- JButton refreshButton = new JButton("Refresh Data with new parameters");
-
- BufferedImage videoImage = new BufferedImage(200, 200, BufferedImage.TYPE_INT_BGR);
- ImageComponent imageVideoComponent = new ImageComponent();
- JLabel videoTimeLabel = new JLabel("", JLabel.CENTER);
- int stepY = 15;
-
- @Override
- public void compute()
- {
-
- mainFrame.pack();
-
- mainPanel.setLayout(new BoxLayout(mainPanel, BoxLayout.Y_AXIS));
-
- videoTimeLabel.setFont(new Font("Arial", Font.BOLD, 15));
- legendLabel.setFont(new Font("Arial", Font.BOLD, 20));
-
- JMenu fileMenu = new JMenu("File");
- fileMenu.add(openFileMenuItem);
- openFileMenuItem.addActionListener(this);
- fileMenu.addSeparator();
- fileMenu.add(compileImageFileMenuItem);
- compileImageFileMenuItem.addActionListener(this);
- fileMenu.add(mergeHeatMapMenuItem);
- mergeHeatMapMenuItem.addActionListener(this);
-
- menuBar.add(fileMenu);
-
- mainFrame.setJMenuBar(menuBar);
-
- JPanel sidePanel = new JPanel();
- sidePanel.setLayout(new BorderLayout());
- JPanel videoPanel = GuiUtil.generatePanel("video");
- imageVideoComponent.setImage(videoImage);
- // ComponentUtil.setFixedWidth( imageVideoComponent , 400 );
- videoPanel.add(GuiUtil.besidesPanel(imageVideoComponent));
- videoPanel.add(GuiUtil.besidesPanel(videoTimeLabel));
-
- sidePanel.add(setupPanel, BorderLayout.NORTH);
- sidePanel.add(videoPanel, BorderLayout.CENTER);
-
- mainFrame.getContentPane().setLayout(new BorderLayout());
- mainFrame.getContentPane().add(sidePanel, BorderLayout.EAST);
- mainFrame.getContentPane().add(legendLabel, BorderLayout.SOUTH);
-
- mainFrame.getContentPane().add(scrollPane, BorderLayout.CENTER);
- scrollPane.setPreferredSize(new Dimension(800, 450));
-
- distance1TextField.setText("" + SEUIL_DISTANCE_1);
- distance2TextField.setText("" + SEUIL_DISTANCE_2);
- distanceHeadHeadTextField.setText("" + SEUIL_DISTANCE_HEAD_HEAD);
- distanceHeadGenitalTextField.setText("" + SEUIL_DISTANCE_HEAD_GENITAL);
- seuilSideTextField.setText("" + SEUIL_SIDE);
- speed_threshold1TextField.setText("" + SPEED_THRESHOLD_1);
- speed_threshold2TextField.setText("" + SPEED_THRESHOLD_2);
- speed_threshold3TextField.setText("" + SPEED_THRESHOLD_3);
- fpsTextField.setText("" + FPS);
- // loadFrameStartTextField.setText( ""+LOAD_FRAME_START );
- // loadFrameEndTextField.setText( ""+LOAD_FRAME_END );
- computeImageStartMinuteTextField.setText("" + START_MINUTE);
- computeImageNbMinuteTextField.setText("" + NB_MINUTE);
-
- setupPanel.add(GuiUtil.besidesPanel(new JLabel("Distance Threshold 1(closest) in px:"), distance1TextField));
- setupPanel.add(GuiUtil.besidesPanel(new JLabel("Distance Threshold 2 in px:"), distance2TextField));
- setupPanel.add(GuiUtil.besidesPanel(new JLabel("Distance Head-Head in px:"), distanceHeadHeadTextField));
- setupPanel
- .add(GuiUtil.besidesPanel(new JLabel("Distance Head-Genital 2 in px:"), distanceHeadGenitalTextField));
- setupPanel.add(GuiUtil.besidesPanel(new JLabel("Side detection Parameter in px:"), seuilSideTextField));
- setupPanel.add(GuiUtil.besidesPanel(new JLabel("Speed Threshold 1 (black) in px:"), speed_threshold1TextField));
- setupPanel.add(GuiUtil.besidesPanel(new JLabel("Speed Threshold 2 (gray) in px:"), speed_threshold2TextField));
- setupPanel.add(
- GuiUtil.besidesPanel(new JLabel("Speed Threshold 3 (lightgray) in px:"), speed_threshold3TextField));
- setupPanel.add(GuiUtil.besidesPanel(new JLabel("FPS:"), fpsTextField));
- // setupPanel.add( GuiUtil.besidesPanel( new JLabel("Load frame start:" ) , loadFrameStartTextField) );
- // setupPanel.add( GuiUtil.besidesPanel( new JLabel("Load frame end:" ) , loadFrameEndTextField) );
- setupPanel.add(GuiUtil.besidesPanel(new JLabel("Computation Start Minute:"), computeImageStartMinuteTextField));
- setupPanel.add(GuiUtil.besidesPanel(new JLabel("Computation End Minute:"), computeImageNbMinuteTextField));
- setupPanel.add(GuiUtil.besidesPanel(new JLabel("Mouse Scale"), scaleTextField));
- setupPanel.add(GuiUtil.besidesPanel(new JLabel("Video Image display scale"), scaleVideoTextField));
-
- setupPanel.add(GuiUtil.besidesPanel(refreshButton));
- refreshButton.addActionListener(this);
-
- scaleTextField.setFont(FontUtil.setStyle(scaleTextField.getFont(), Font.BOLD));
-
- scaleTextField.addKeyListener(this);
-
- mainFrame.pack();
- mainFrame.center();
- mainFrame.addToMainDesktopPane();
- mainFrame.setVisible(true);
-
- }
-
- class MouseInfoRecord
- {
- boolean isGettingToOtherAndTouch = false;
- boolean isEscapingFromOtherAndUnTouch = false;
- boolean isEscaping = false;
- boolean distanceIsInferiorToThreshold1 = false;
- boolean isGoingToTheOther = false;
- boolean mouseGetToOtherMouseAndEscapeInOut = false;
- boolean mouseGetToOtherMouseAndOtherEscapeInOut = false;
- boolean eventA = false;
- boolean eventB = false;
- boolean eventC = false;
- boolean eventD = false;
- float speed;
- Point2D headPosition;
- Point2D tailPosition;
- Point2D bodyPosition;
- public boolean distanceIsInferiorToThreshold2 = false;
- public boolean isBehindTheOther = false;
- public boolean isBesideTheOther = false;
- public boolean thisHeadWithOtherGenitalContact = false;
- }
-
- public void openFile()
- {
- // load last preferences for loader.
- JFileChooser fileChooser = new JFileChooser();
- fileChooser.setMultiSelectionEnabled(true);
- String node = "plugins/PhysicTracker/videolabelmaker/browser";
-
- Preferences preferences = Preferences.userRoot().node(node);
- String path = preferences.get("path", "");
- fileChooser.setCurrentDirectory(new File(path));
-
- int x = preferences.getInt("x", 0);
- int y = preferences.getInt("y", 0);
- int width = preferences.getInt("width", 400);
- int height = preferences.getInt("height", 400);
-
- fileChooser.setLocation(x, y);
- fileChooser.setPreferredSize(new Dimension(width, height));
-
- int returnValue = fileChooser.showDialog(null, "Load");
- if (returnValue == JFileChooser.APPROVE_OPTION)
- {
- preferences.put("path", fileChooser.getCurrentDirectory().getAbsolutePath());
- preferences.putInt("x", fileChooser.getX());
- preferences.putInt("y", fileChooser.getY());
- preferences.putInt("width", fileChooser.getWidth());
- preferences.putInt("height", fileChooser.getHeight());
-
- for (int i = 0; i < fileChooser.getSelectedFiles().length; i++)
- {
- if (fileChooser.getSelectedFiles()[i].getName().contains("extra"))
- {
- System.out.println(
- "You are trying to load an extra xml file. Please load the original file instead.");
- continue;
- }
-
- VideoLabelPanel videoLabelPanel = new VideoLabelPanel(fileChooser.getSelectedFiles()[i]);
- mainPanel.add(videoLabelPanel.panel);
- videoLabelPanelArrayList.add(videoLabelPanel);
- mainPanel.add(new JPanel());
- }
-
- }
- mainPanel.updateUI();
- }
-
- @Override
- public void actionPerformed(ActionEvent e)
- {
-
- if (e.getSource() == refreshButton)
- {
- try
- {
- SEUIL_DISTANCE_1 = Float.parseFloat(distance1TextField.getText());
- SEUIL_DISTANCE_2 = Float.parseFloat(distance2TextField.getText());
- SEUIL_DISTANCE_HEAD_HEAD = Float.parseFloat(distanceHeadHeadTextField.getText());
-
- SEUIL_DISTANCE_HEAD_GENITAL = Float.parseFloat(distanceHeadGenitalTextField.getText());
- SEUIL_SIDE = Float.parseFloat(seuilSideTextField.getText());
- SPEED_THRESHOLD_1 = Float.parseFloat(speed_threshold1TextField.getText());
- SPEED_THRESHOLD_2 = Float.parseFloat(speed_threshold2TextField.getText());
- SPEED_THRESHOLD_3 = Float.parseFloat(speed_threshold3TextField.getText());
- FPS = Float.parseFloat(fpsTextField.getText());
- }
- catch (NumberFormatException e1)
- {
- MessageDialog.showDialog(
- "One of the parameters cannot be understand as a number. Please correct it and refresh again.",
- MessageDialog.ERROR_MESSAGE);
- return;
- }
- for (VideoLabelPanel vlp : videoLabelPanelArrayList)
- {
- if (!vlp.isFreezed())
- {
- vlp.buildResultImage();
- }
- }
-
- double scaleVideo = 1;
- try
- {
- scaleVideo = Double.parseDouble(scaleVideoTextField.getText());
- }
- catch (Exception e1)
- {
- // the field is incorrect.
- }
-
- imageVideoComponent.setZoom(scaleVideo);
-
- }
-
- if (e.getSource() == openFileMenuItem)
- {
- openFile();
- }
-
- if (e.getSource() == compileImageFileMenuItem)
- {
- compileImageFile();
- }
-
- if (e.getSource() == mergeHeatMapMenuItem)
- {
- mergeHeatMapDirectory();
- }
-
- }
-
- private void mergeHeatMapDirectory()
- {
-
- JFileChooser fileChooser = new JFileChooser();
- fileChooser.setMultiSelectionEnabled(true);
-
- String node = "plugins/PhysicTracker/videolabelmaker/browser";
-
- Preferences preferences = Preferences.userRoot().node(node);
- String path = preferences.get("path", "");
- fileChooser.setCurrentDirectory(new File(path));
-
- int returnValue = fileChooser.showDialog(null, "Load heatmap files");
- if (returnValue == JFileChooser.APPROVE_OPTION)
- {
- IcyBufferedImage resultImage = new IcyBufferedImage(1, 1, 4, DataType.USHORT);
-
- for (int i = 0; i < fileChooser.getSelectedFiles().length; i++)
- {
- File file = fileChooser.getSelectedFiles()[i];
- if (file.getAbsolutePath().toLowerCase().endsWith("heatmap.tif"))
- {
- java.awt.Point copyPoint = new java.awt.Point(resultImage.getWidth(), 0);
- System.out.println("Loading file " + file.getAbsolutePath());
- Sequence sequence = Loader.loadSequence(file.getAbsolutePath(), 0, false);
-
- // write sequence file name in image.
- Graphics2D g = (Graphics2D) sequence.getFirstImage().getGraphics();
- g.setColor(Color.white);
- g.setFont(new Font("Arial", Font.PLAIN, 12));
- g.drawString(FileUtil.getFileName(file.getAbsolutePath(), false), 0, 15);
-
- int newHeight = Math.max(resultImage.getHeight(), sequence.getHeight());
- resultImage = IcyBufferedImageUtil.scale(resultImage, resultImage.getWidth() + sequence.getWidth(),
- newHeight, false, SwingConstants.LEFT, SwingConstants.TOP);
-
- resultImage.copyData(sequence.getFirstImage(), null, copyPoint);
-
- }
- }
-
- // save stitched sequence
-
- Sequence outputSequence = new Sequence(resultImage);
- File outFile = new File(FileUtil.getDirectory(fileChooser.getSelectedFile().getAbsolutePath())
- + FileUtil.separator + "heatmap stitched.tif");
-
- new AnnounceFrame("Saving stitched heatmap to file " + outFile.getAbsolutePath(), 5);
- Saver.save(outputSequence, outFile);
-
- // load files
- /*
- * for ( int i = 0 ; i < fileChooser.getSelectedFiles().length ; i++ )
- * {
- * try {
- * BufferedImage bi = ImageIO.read( fileChooser.getSelectedFiles()[i] );
- * fileImageHashMap.put( fileChooser.getSelectedFiles()[i] , bi );
- *
- * } catch (IOException e1) {
- * e1.printStackTrace();
- * }
- *
- * fileArray.add( fileChooser.getSelectedFiles()[i] );
- * }
- */
- }
-
- }
-
- private void compileImageFile()
- {
-
- JFileChooser fileChooser = new JFileChooser();
- fileChooser.setMultiSelectionEnabled(true);
- int returnValue = fileChooser.showDialog(null, "Load");
- if (returnValue == JFileChooser.APPROVE_OPTION)
- {
-
- ArrayList<File> fileArray = new ArrayList<File>();
- HashMap<File, BufferedImage> fileImageHashMap = new HashMap<File, BufferedImage>();
-
- // load files
-
- for (int i = 0; i < fileChooser.getSelectedFiles().length; i++)
- {
- try
- {
- BufferedImage bi = ImageIO.read(fileChooser.getSelectedFiles()[i]);
- fileImageHashMap.put(fileChooser.getSelectedFiles()[i], bi);
-
- }
- catch (IOException e1)
- {
- e1.printStackTrace();
- }
-
- fileArray.add(fileChooser.getSelectedFiles()[i]);
- }
-
- // pack files.
-
- int NB_TOTAL_CRITERIA = 28;
-
- for (int criteria = 0; criteria < NB_TOTAL_CRITERIA; criteria++)
- {
- // look for maxWidth.
-
- int maxWidth = 0;
- int nbFileMatching = 0;
-
- String tokenToLook = ".criteria_" + criteria + ".png";
- for (File file : fileArray)
- {
- if (file.getAbsoluteFile().toString().contains(tokenToLook))
- {
- nbFileMatching++;
- int w = fileImageHashMap.get(file).getWidth();
- // System.out.println("current w : " + w );
- if (w > maxWidth)
- maxWidth = w;
- }
- }
-
- System.out.println("Max Width : " + maxWidth);
-
- // create targetImage
- if (nbFileMatching == 0)
- {
- new ToolTipFrame(
- "<html>No file matching .criteria_XX.png found in the list of file provided.<br>Create those images by clicking the save button<br>on each XML panel</html>");
- return;
- }
- ;
- BufferedImage image2 = new BufferedImage(maxWidth, stepY * nbFileMatching, BufferedImage.TYPE_INT_BGR);
- Graphics2D targetG = (Graphics2D) image2.getGraphics();
-
- int currentY = 0;
- for (File file : fileArray)
- {
- if (file.getAbsoluteFile().toString().contains(tokenToLook))
- {
- BufferedImage bi = fileImageHashMap.get(file);
- targetG.drawImage(bi, null, 0, currentY);
- if (criteria == 2)
- {
- targetG.setColor(Color.black);
- targetG.drawString(file.getAbsoluteFile().toString(), 400, currentY + stepY / 2);
- }
- currentY += bi.getHeight();
- }
- }
-
- try
- {
-
- String fileName = fileChooser.getSelectedFile().getParent() + "\\__crit_" + criteria + ".png";
- System.out.println("Saving : " + fileName);
- ImageIO.write(image2, "png", new File(fileName));
-
- }
- catch (IOException e1)
- {
- e1.printStackTrace();
- }
-
- }
- }
-
- System.out.println("Finished.");
-
- }
-
- ArrayList<VideoLabelPanel> videoLabelPanelArrayList = new ArrayList<VideoLabelPanel>();
-
- public class ImageComponent extends JPanel implements MouseMotionListener, MouseListener
- {
- private static final long serialVersionUID = -5907107709763419248L;
- BufferedImage image;
- ArrayList<String> stringList = new ArrayList<String>();
- double zoom = 1;
-
- public void setZoom(double zoom)
- {
- this.zoom = zoom;
- // System.out.println("zoom:"+zoom);
- updateUI();
- }
-
- public ImageComponent()
- {
- // this.showDot = showDot;
- }
-
- public void setImage(BufferedImage image)
- {
- this.image = image;
- this.setPreferredSize(new Dimension((int) (image.getWidth() * zoom), (int) (image.getHeight() * zoom)));
- repaint();
- this.addMouseMotionListener(this);
- this.addMouseListener(this);
- }
-
- int y = 0;
- int x = 0;
- // boolean showDot = false;
-
- @Override
- protected void paintComponent(Graphics g)
- {
-
- super.paintComponent(g);
-
- Graphics2D g2 = (Graphics2D) g;
-
- if (image != null)
- {
- g2.scale(zoom, zoom);
- g2.drawImage(image, null, 0, 0);
-
- if (stringList.size() != 0)
- {
- float dash[] = {10.0f};
- g2.setStroke(
- new BasicStroke(1.0f, BasicStroke.CAP_BUTT, BasicStroke.JOIN_MITER, 10.0f, dash, 0.0f));
- g2.drawLine(x, 0, x, image.getHeight());
- }
- }
- }
-
- @Override
- public void mouseDragged(MouseEvent e)
- {
- x = e.getX();
- repaint();
- }
-
- @Override
- public void mouseMoved(MouseEvent e)
- {
-
- x = e.getX();
-
- int index = e.getY() / stepY;
- if (stringList.size() > index)
- {
- String string = stringList.get(index);
- if (string != null)
- {
- legendLabel.setText(string);
- }
- }
- }
-
- @Override
- public void mouseClicked(MouseEvent e)
- {
- x = e.getX();
- repaint();
- }
-
- @Override
- public void mouseEntered(MouseEvent e)
- {
- }
-
- @Override
- public void mouseExited(MouseEvent e)
- {
- }
-
- @Override
- public void mousePressed(MouseEvent e)
- {
- }
-
- @Override
- public void mouseReleased(MouseEvent e)
- {
- }
-
- }
-
- public class VideoLabelPanel implements ActionListener, MouseListener, MouseMotionListener
- {
-
- JPanel panel = null;
-
- int firstFrame;
- int lastFrame;
-
- HashMap<Integer, MouseInfoRecord> mouseARecord = new HashMap<Integer, MouseInfoRecord>();
- HashMap<Integer, MouseInfoRecord> mouseBRecord = new HashMap<Integer, MouseInfoRecord>();
-
- int xPixelPetT = 1;
-
- BufferedImage imageChrono = new BufferedImage(100, 100, BufferedImage.TYPE_INT_BGR);
- ImageIcon imageIcon;
- ImageComponent imageComponent = new ImageComponent();
- JButton saveImageButton = new JButton("Save Chrono Image");
- JButton exportEventsAsXML = new JButton("Export Events as XML");
- JButton exportSpeedButton = new JButton("Export speed and distance");
- // freeze settings: The scale and all the info are not propagated to this animal if the freeze is on.
- JCheckBox freezeSettingsCheckBox = new JCheckBox("freeze settings");
-
- JButton computeVisionInFollowButton = new JButton("Export follow vision graph");
- JButton computeVisionWhenStoppedButton = new JButton("Export stop vision graph");
-
- JButton computeLocationHeatMapButton = new JButton("Create location heat map");
-
- JButton computeUSVStat = new JButton("Create USV stat");
-
- File file;
- File extraXMLFile; // contains extra labels to include to this video.
- File videoFile;
- FrameAccess frameAccess;
- Animal animal = null;
- SwimmingObject swimmingObject = null;
-
- public VideoLabelPanel(File fileXML)
- {
-
- computeVisionInFollowButton.setToolTipText("Location of I in the vision of R (R following)");
- computeVisionWhenStoppedButton.setToolTipText("Location of I in the vision of R (R stopped)");
-
- JPanel sidePanel2 = GuiUtil.generatePanel("Video");
-
- // check if the user is trying to load an avi file, and switch extension to XML if this is the case.
- if (FileUtil.getFileExtension(fileXML.getAbsolutePath(), false).toLowerCase().equals("avi"))
- {
- System.out.println("Avi loaded. Switching to XML.");
- fileXML = new File(FileUtil.setExtension(fileXML.getAbsolutePath(), ".avi.xml"));
- System.out.println("XML file name is : " + fileXML.getAbsolutePath());
- }
-
- this.file = fileXML;
-
- panel = GuiUtil.generatePanel(fileXML.getAbsolutePath());
-
- panel.setLayout(new BorderLayout());
-
- sidePanel2.add(GuiUtil.besidesPanel(saveImageButton));
- sidePanel2.add(GuiUtil.besidesPanel(exportEventsAsXML));
- sidePanel2.add(GuiUtil.besidesPanel(exportSpeedButton));
- sidePanel2.add(GuiUtil.besidesPanel(computeVisionInFollowButton));
- sidePanel2.add(GuiUtil.besidesPanel(computeVisionWhenStoppedButton));
- sidePanel2.add(GuiUtil.besidesPanel(computeLocationHeatMapButton));
- sidePanel2.add(GuiUtil.besidesPanel(computeUSVStat));
-
- freezeSettingsCheckBox.setSelected(false);
- sidePanel2.add(GuiUtil.besidesPanel(freezeSettingsCheckBox));
-
- computeVisionInFollowButton.addActionListener(this);
- computeVisionWhenStoppedButton.addActionListener(this);
- computeLocationHeatMapButton.addActionListener(this);
- computeUSVStat.addActionListener(this);
- exportEventsAsXML.addActionListener(this);
-
- panel.add(sidePanel2, BorderLayout.CENTER);
- saveImageButton.addActionListener(this);
- exportSpeedButton.addActionListener(this);
-
- loadXML(fileXML);
-
- panel.add(imageComponent, BorderLayout.EAST);
-
- imageComponent.setImage(imageChrono);
-
- imageComponent.addMouseListener(this);
- imageComponent.addMouseMotionListener(this);
-
- buildResultImage();
-
- }
-
- public boolean isFreezed()
- {
- return freezeSettingsCheckBox.isSelected();
- }
-
- DecimalFormat decimalFormat = new DecimalFormat("00");
-
- class Periode
- {
- int start;
- int end;
-
- public int length()
- {
- return end - start;
- }
-
- MouseEventType mouseEvent;
- }
-
- String nbFrameToDisplayInSecond(float value)
- {
- value = (int) ((10f * value) / FPS) / 10f;
- return "" + value + "s";
- }
-
- double demiVisionDeSouris = 2f * Math.PI / 3f;
-
- /**
- * @return This function search for the first frame recorded in the XML file.
- * It then shift all data to remove all zero data at the beginning of the sequence.
- */
- public int trimAnalysisRecord()
- {
- // look at max t val.
-
- int tMin = Integer.MAX_VALUE;
- int tMax = 0;
- {
- Iterator<Integer> integerIterator = mouseARecord.keySet().iterator();
- while (integerIterator.hasNext())
- {
- int val = integerIterator.next();
- if (val > tMax)
- tMax = val;
- if (val < tMin)
- tMin = val;
- }
- }
- {
- Iterator<Integer> integerIterator = mouseBRecord.keySet().iterator();
- while (integerIterator.hasNext())
- {
- int val = integerIterator.next();
- if (val > tMax)
- tMax = val;
- if (val < tMin)
- tMin = val;
- }
- }
-
- HashMap<Integer, MouseInfoRecord> mouseARecordReSorted = new HashMap<Integer, MouseInfoRecord>();
- HashMap<Integer, MouseInfoRecord> mouseBRecordReSorted = new HashMap<Integer, MouseInfoRecord>();
-
- // shift the data
- if (tMin != 0)
- {
- {
- boolean warningHasBeenDisplayed = false;
- // System.out.println("Shifting data");
- for (int t = tMin; t < tMax; t++)
- {
- MouseInfoRecord a = mouseARecord.get(t);
- MouseInfoRecord b = mouseBRecord.get(t);
- if ((a == null) || (b == null))
- {
- // +" \n\n Re start the tracker to perform the tracking on this frame.
- String problem = "A tracking frame is missing at t=" + t + " in file " + this.file + ".";
- System.out.println(problem);
- if (!warningHasBeenDisplayed)
- {
- MessageDialog.showDialog("<html><center>" + problem
- + " <hr>This Message appears once per animal file. <br>See ouput to get the total list of missing frames</html>",
- MessageDialog.ERROR_MESSAGE);
- warningHasBeenDisplayed = true;
- }
- }
- else
- {
- mouseARecordReSorted.put(t - tMin, mouseARecord.get(t));
- mouseARecord.remove(t);
-
- // mouseBRecord.put( t-tMin, mouseBRecord.get( t ) );
- mouseBRecordReSorted.put(t - tMin, mouseBRecord.get(t));
- mouseBRecord.remove(t);
- }
-
- // System.out.println( "t-TMin:" +(t-tMin) + " t:"+ t);
-
- // mouseARecord.put( t-tMin, mouseARecord.get( t ) );
-
- // mouseARecordReSorted.put( t-tMin, mouseARecord.get( t ) );
- // mouseARecord.remove( t );
- //
- // //mouseBRecord.put( t-tMin, mouseBRecord.get( t ) );
- // mouseBRecordReSorted.put( t-tMin, mouseBRecord.get( t ) );
- // mouseBRecord.remove( t );
- }
- }
-
- mouseARecord = mouseARecordReSorted;
- mouseBRecord = mouseBRecordReSorted;
- }
-
- // System.out.println( "--- check mouse record ");
- //
- // MouseInfoRecord test = mouseARecord.get( 4471 );
- // System.out.println( "contain object ? " + mouseARecord.containsKey( 4471 ) );
- // System.out.println( "record is " + test );
-
- // // test
- // for ( int t = tMin ; t< mouseARecord.size() ; t++ )
- // {
- // MouseInfoRecord info = mouseARecord.get( t );
- // if ( info == null )
- // {
- // System.out.println( "error at t:" + t );
- // System.out.println( "null" );
- // }
- //
- //// mouseARecord.put( t-tMin, mouseARecord.get( t ) );
- //// mouseARecord.remove( t );
- //
- //// mouseBRecord.put( t-tMin, mouseBRecord.get( t ) );
- //// mouseBRecord.remove( t );
- // }
-
- return tMin;
- }
-
- public void buildResultImage()
- {
-
- ArrayList<Periode> eventContactList = new ArrayList<Periode>();
-
- Icy.getMainInterface().getSwimmingPool().remove(swimmingObject);
- animal = new Animal(file.getName());
- swimmingObject = new SwimmingObject(animal);
-
- // // look at max t val.
- //
- // int tMin = Integer.MAX_VALUE;
- // int tMax = 0;
- // {
- // Iterator<Integer> integerIterator = mouseARecord.keySet().iterator();
- // while ( integerIterator.hasNext() )
- // {
- // int val = integerIterator.next();
- // if ( val > tMax ) tMax = val;
- // if ( val < tMin ) tMin = val;
- // }
- // }
- // {
- // Iterator<Integer> integerIterator = mouseBRecord.keySet().iterator();
- // while ( integerIterator.hasNext() )
- // {
- // int val = integerIterator.next();
- // if ( val > tMax ) tMax = val;
- // if ( val < tMin ) tMin = val;
- // }
- // }
-
- // trimAnalysisRecord();
-
- int tMin = 0;
-
- START_MINUTE = Integer.parseInt(computeImageStartMinuteTextField.getText());
- NB_MINUTE = Integer.parseInt(computeImageNbMinuteTextField.getText());
-
- // FPS = Integer.parseInt( compute )
-
- firstFrame = (int) (tMin + START_MINUTE * 60 * FPS);
- // lastFrame = tMax;
-
- // {
- lastFrame = (int) (firstFrame + NB_MINUTE * 60 * FPS);
- // }
-
- System.out.println("first frame : " + firstFrame);
- System.out.println("last frame : " + lastFrame);
-
- int tMax = lastFrame;
-
- int nbExtraEvent = 15; // getNbExtraEvent( file );
-
- imageChrono = new BufferedImage(lastFrame - firstFrame, 480 + nbExtraEvent * stepY,
- BufferedImage.TYPE_INT_BGR);
-
- imageComponent.setImage(imageChrono);
-
- panel.updateUI();
-
- int currentY = 0;
-
- Graphics2D g2 = (Graphics2D) imageChrono.getGraphics();
-
- // empty image
-
- g2.fillRect(0, 0, imageChrono.getWidth(), imageChrono.getHeight());
-
- // Clean up data
- {
-
- for (int t = 0; t < tMax; t++)
- {
- // System.out.println(t + " / " + tMax );
- // System.out.println( t );
- if (mouseARecord.containsKey(t))
- {
- MouseInfoRecord mouseA = mouseARecord.get(t);
- if (mouseA == null)
- {
- System.out.println("no mouse A record at t=" + t);
- }
- mouseA.distanceIsInferiorToThreshold1 = false;
- mouseA.distanceIsInferiorToThreshold2 = false;
- mouseA.isEscaping = false;
- mouseA.isEscapingFromOtherAndUnTouch = false;
- mouseA.isGettingToOtherAndTouch = false;
- mouseA.isGoingToTheOther = false;
- mouseA.mouseGetToOtherMouseAndEscapeInOut = false;
- mouseA.mouseGetToOtherMouseAndOtherEscapeInOut = false;
- mouseA.eventA = false;
- mouseA.eventB = false;
- mouseA.eventC = false;
- mouseA.eventD = false;
- mouseA.isBehindTheOther = false;
- mouseA.isBesideTheOther = false;
- mouseA.thisHeadWithOtherGenitalContact = false;
- }
- if (mouseBRecord.containsKey(t))
- {
- MouseInfoRecord mouseB = mouseBRecord.get(t);
- mouseB.distanceIsInferiorToThreshold1 = false;
- mouseB.distanceIsInferiorToThreshold2 = false;
- mouseB.isEscaping = false;
- mouseB.isEscapingFromOtherAndUnTouch = false;
- mouseB.isGettingToOtherAndTouch = false;
- mouseB.isGoingToTheOther = false;
- mouseB.mouseGetToOtherMouseAndEscapeInOut = false;
- mouseB.mouseGetToOtherMouseAndOtherEscapeInOut = false;
- mouseB.eventA = false;
- mouseB.eventB = false;
- mouseB.eventC = false;
- mouseB.eventD = false;
- mouseB.isBehindTheOther = false;
- mouseB.isBesideTheOther = false;
- mouseB.thisHeadWithOtherGenitalContact = false;
- }
- }
- }
-
- // DISPLAY TIME
- {
- g2.setColor(Color.black);
-
- {
- for (int t = 0; t < tMax; t++)
- {
-
- if (t % (FPS * 2) < 1)
- {
- g2.drawString(
- "" + (int) (t / (FPS * 60)) + ":" + decimalFormat.format((int) (t / FPS % 60)),
- t - firstFrame, currentY + 12);
- g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
- }
-
- }
- }
- currentY += stepY;
- imageComponent.stringList.add("Time");
- }
-
- {
-
- // Label 2
- // Distance de souris A a B est inferieure a SEUIL_DISTANCE_1
- boolean event = false;
- int nbEvent = 0;
- int total = 0;
-
- EventTimeLine distanceLessThanThreshold1TimeLine = new EventTimeLine("Distance < thr 1",
- EventType.DISTANCE_INFERIOR_THRESHOLD_1, TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(distanceLessThanThreshold1TimeLine);
-
- g2.setColor(Color.red);
- for (int t = 0; t < tMax; t++)
- {
- // System.out.println("working on t=" + t );
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
- // System.out.println("contain keys");
-
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- float minDistance = Float.MAX_VALUE;
- minDistance = getMin(minDistance,
- (float) mouseA.bodyPosition.distance(mouseB.bodyPosition));
- minDistance = getMin(minDistance,
- (float) mouseA.bodyPosition.distance(mouseB.headPosition));
- minDistance = getMin(minDistance,
- (float) mouseA.bodyPosition.distance(mouseB.tailPosition));
- minDistance = getMin(minDistance,
- (float) mouseA.headPosition.distance(mouseB.bodyPosition));
- minDistance = getMin(minDistance,
- (float) mouseA.headPosition.distance(mouseB.headPosition));
- minDistance = getMin(minDistance,
- (float) mouseA.headPosition.distance(mouseB.tailPosition));
- minDistance = getMin(minDistance,
- (float) mouseA.tailPosition.distance(mouseB.bodyPosition));
- minDistance = getMin(minDistance,
- (float) mouseA.tailPosition.distance(mouseB.headPosition));
- minDistance = getMin(minDistance,
- (float) mouseA.tailPosition.distance(mouseB.tailPosition));
-
- // System.out.println( "min distance = " + minDistance );
-
- if (minDistance < SEUIL_DISTANCE_1)
- {
- distanceLessThanThreshold1TimeLine.addPunctualEvent(t - firstFrame);
- mouseA.distanceIsInferiorToThreshold1 = true;
- mouseB.distanceIsInferiorToThreshold1 = true;
- }
- else
- {
- mouseA.distanceIsInferiorToThreshold1 = false;
- mouseB.distanceIsInferiorToThreshold1 = false;
- }
-
- }
- }
-
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : distanceLessThanThreshold1TimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Distance less than THRESHOLD 1 nbEvent:" + nbEvent + " totalT:"
- + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
-
- currentY += stepY;
-
- imageComponent.stringList.add(string);
-
- }
-
- {
- // LABEL 3
- // Distance de souris A a B est inferieure a SEUIL_DISTANCE_2
- boolean event = false;
- int nbEvent = 0;
- int total = 0;
-
- EventTimeLine distanceLessThanThreshold2TimeLine = new EventTimeLine("Distance < thr 2",
- EventType.DISTANCE_INFERIOR_THRESHOLD_2, TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(distanceLessThanThreshold2TimeLine);
-
- g2.setColor(Color.orange);
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- float minDistance = Float.MAX_VALUE;
- minDistance = getMin(minDistance,
- (float) mouseA.bodyPosition.distance(mouseB.bodyPosition));
- minDistance = getMin(minDistance,
- (float) mouseA.bodyPosition.distance(mouseB.headPosition));
- minDistance = getMin(minDistance,
- (float) mouseA.bodyPosition.distance(mouseB.tailPosition));
- minDistance = getMin(minDistance,
- (float) mouseA.headPosition.distance(mouseB.bodyPosition));
- minDistance = getMin(minDistance,
- (float) mouseA.headPosition.distance(mouseB.headPosition));
- minDistance = getMin(minDistance,
- (float) mouseA.headPosition.distance(mouseB.tailPosition));
- minDistance = getMin(minDistance,
- (float) mouseA.tailPosition.distance(mouseB.bodyPosition));
- minDistance = getMin(minDistance,
- (float) mouseA.tailPosition.distance(mouseB.headPosition));
- minDistance = getMin(minDistance,
- (float) mouseA.tailPosition.distance(mouseB.tailPosition));
-
- if (minDistance < SEUIL_DISTANCE_2)
- {
- distanceLessThanThreshold2TimeLine.addPunctualEvent(t - firstFrame);
- mouseA.distanceIsInferiorToThreshold2 = true;
- mouseB.distanceIsInferiorToThreshold2 = true;
- }
- else
- {
- mouseA.distanceIsInferiorToThreshold2 = false;
- mouseB.distanceIsInferiorToThreshold2 = false;
- }
-
- }
- }
-
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : distanceLessThanThreshold2TimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Distance less than THRESHOLD 2 nbEvent:" + nbEvent + " totalT:"
- + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
-
- currentY += stepY;
-
- imageComponent.stringList.add(string);
- }
-
- {
- // LABEL 4
- // Head A - Head B SEUIL_DISTANCE_HEAD_HEAD
- boolean event = false;
- int nbEvent = 0;
- int total = 0;
-
- EventTimeLine OralOralTimeLine = new EventTimeLine("Oral-Oral", EventType.ORAL_ORAL,
- TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(OralOralTimeLine);
-
- g2.setColor(Color.black);
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- float minDistance = Float.MAX_VALUE;
- minDistance = getMin(minDistance,
- (float) mouseA.headPosition.distance(mouseB.headPosition));
- if (minDistance < SEUIL_DISTANCE_HEAD_HEAD)
- {
- OralOralTimeLine.addPunctualEvent(t - firstFrame);
-
- }
- else
- {
-
- }
- }
- }
-
- // display
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : OralOralTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Head - Head : nbevent: " + nbEvent + " TotalT=" + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
-
- currentY += stepY;
- imageComponent.stringList.add(string);
-
- }
- {
- // LABEL 5
- // Head A - Genital B SEUIL_DISTANCE_HEAD_GENITAL
- boolean event = false;
- int nbEvent = 0;
- int total = 0;
-
- EventTimeLine eventTimeLine = new EventTimeLine("Oral A - Genital B", EventType.ORAL_A_GENITAL_B,
- TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- g2.setColor(Color.RED);
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- float minDistance = Float.MAX_VALUE;
- minDistance = getMin(minDistance,
- (float) mouseA.headPosition.distance(mouseB.tailPosition));
- if (minDistance < SEUIL_DISTANCE_HEAD_GENITAL)
- {
- eventTimeLine.addPunctualEvent(t - firstFrame);
-
- mouseA.thisHeadWithOtherGenitalContact = true;
-
- }
- else
- {
-
- }
- }
- }
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- g2.drawLine(0, currentY - 1, imageChrono.getWidth(), currentY - 1);
- String string = "Head A - Genital B nbEvent:" + nbEvent + " TotalT:" + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
-
- currentY += stepY;
- imageComponent.stringList.add(string);
-
- }
- {
- // LABEL 6
- // Head B - Genital A SEUIL_DISTANCE_HEAD_GENITAL
- boolean event = false;
- int nbEvent = 0;
- int total = 0;
-
- EventTimeLine eventTimeLine = new EventTimeLine("Oral B - Genital A", EventType.ORAL_B_GENITAL_A,
- TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- g2.setColor(Color.GREEN);
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- float minDistance = Float.MAX_VALUE;
- minDistance = getMin(minDistance,
- (float) mouseA.tailPosition.distance(mouseB.headPosition));
- if (minDistance < SEUIL_DISTANCE_HEAD_GENITAL)
- {
- eventTimeLine.addPunctualEvent(t - firstFrame);
-
- mouseB.thisHeadWithOtherGenitalContact = true;
-
- }
- else
- {
-
- }
- }
- }
-
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Head B - Genital A : nbEvent:" + nbEvent + " totalT:"
- + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
-
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
- {
- // Mouse A is behind Mouse B
- boolean event = false;
- int nbEvent = 0;
- int total = 0;
-
- EventTimeLine eventTimeLine = new EventTimeLine("Mouse A behind B (any distance)", EventType.A_BEHIND_B,
- TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- float mouseABodyToMouseBTail = (float) mouseA.bodyPosition.distance(mouseB.tailPosition);
- float mouseABodyToMouseBHead = (float) mouseA.bodyPosition.distance(mouseB.headPosition);
-
- if (mouseABodyToMouseBTail < mouseABodyToMouseBHead)
- {
- eventTimeLine.addPunctualEvent(t - firstFrame);
-
- mouseA.isBehindTheOther = true;
-
- }
- else
- {
-
- }
- }
- }
-
- g2.setColor(Color.RED);
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- g2.drawLine(0, currentY - 1, imageChrono.getWidth(), currentY - 1);
-
- String string = "Mouse A is behind B nbevent:" + nbEvent + " totalT:" + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
-
- {
- // Mouse B is behind Mouse A
- boolean event = false;
- int nbEvent = 0;
- int total = 0;
-
- EventTimeLine eventTimeLine = new EventTimeLine("Mouse B behind A (any distance)", EventType.B_BEHIND_A,
- TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- float mouseBBodyToMouseATail = (float) mouseB.bodyPosition.distance(mouseA.tailPosition);
- float mouseBBodyToMouseAHead = (float) mouseB.bodyPosition.distance(mouseA.headPosition);
-
- if (mouseBBodyToMouseATail < mouseBBodyToMouseAHead)
- {
- eventTimeLine.addPunctualEvent(t - firstFrame);
-
- mouseB.isBehindTheOther = true;
-
- }
- else
- {
- event = false;
- }
- }
- }
-
- g2.setColor(Color.GREEN);
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Mouse B is behind A nbevent:" + nbEvent + " totalT:" + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
- currentY += stepY;
- }
- {
- // Mice are next to the each other and body distance < DISTANCE_2 (same way)
- // Calcul par produit scalaire. si positif meme sens.
- boolean event = false;
- int nbEvent = 0;
- int total = 0;
-
- EventTimeLine eventTimeLine = new EventTimeLine("Mouse next to each other (same way) < distance 2",
- EventType.BESIDE_SAME_WAY, TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- float mouseABodyToMouseBBody = (float) mouseA.bodyPosition.distance(mouseB.bodyPosition);
- float mouseAHeadToMouseBHead = (float) mouseA.headPosition.distance(mouseB.headPosition);
-
- double vectSourisAX = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
- double vectSourisAY = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
- double vectSourisBX = mouseB.headPosition.getX() - mouseB.bodyPosition.getX();
- double vectSourisBY = mouseB.headPosition.getY() - mouseB.bodyPosition.getY();
-
- double produitScalaire = vectSourisAX * vectSourisBX + vectSourisAY * vectSourisBY;
- double distance = Double.parseDouble(distance1TextField.getText());
-
- if (produitScalaire >= 0 && mouseAHeadToMouseBHead < SEUIL_DISTANCE_1
- && mouseABodyToMouseBBody < SEUIL_DISTANCE_1)
- {
- eventTimeLine.addPunctualEvent(t - firstFrame);
-
- mouseA.isBesideTheOther = true;
- mouseB.isBesideTheOther = true;
-
- }
- else
- {
-
- }
-
- }
- }
-
- g2.setColor(Color.DARK_GRAY);
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Mice are next to the each other and body distance < DISTANCE_2 (same way) nbevent:"
- + nbEvent + " totalT:" + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
- currentY += stepY;
- }
- {
- // Mice are next to the each other and body distance < DISTANCE_2 (opposite way)
- boolean event = false;
- int nbEvent = 0;
- int total = 0;
-
- EventTimeLine eventTimeLine = new EventTimeLine("Mouse next to each other (opposite way) < distance 2",
- EventType.BESIDE_OPPOSITE_WAY, TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- double vectSourisAX = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
- double vectSourisAY = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
- double vectSourisBX = mouseB.headPosition.getX() - mouseB.bodyPosition.getX();
- double vectSourisBY = mouseB.headPosition.getY() - mouseB.bodyPosition.getY();
-
- double produitScalaire = vectSourisAX * vectSourisBX + vectSourisAY * vectSourisBY;
-
- float mouseABodyToMouseBHead = (float) mouseA.bodyPosition.distance(mouseB.headPosition);
- float mouseAHeadToMouseBBody = (float) mouseA.headPosition.distance(mouseB.bodyPosition);
-
- if (produitScalaire < 0 && mouseABodyToMouseBHead < SEUIL_DISTANCE_1
- && mouseAHeadToMouseBBody < SEUIL_DISTANCE_1)
- {
- eventTimeLine.addPunctualEvent(t - firstFrame);
-
- }
- else
- {
-
- }
-
- }
- }
-
- g2.setColor(Color.BLACK);
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Mice are next to the each other and body distance < DISTANCE_2 (opposite) nbevent:"
- + nbEvent + " totalT:" + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
-
- /** frameWindow est utilisé pour lisser le calcul de deplacement entre deux points de temps. t-framewindow et t+frameWindow */
- int frameWindow = 6; // 5
-
- {
- EventTimeLine eventTimeLine = new EventTimeLine("Mouse A speed", EventType.MOUSE_A_SPEED,
- TimeLineCategory.USE_DISCRETE_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- // Mice A speed is from 0 to SPEED_THRESHOLD_1
- float nbVal = 0;
- float totalDistance = 0;
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t - frameWindow))
- if (mouseBRecord.containsKey(t - frameWindow))
- if (mouseARecord.containsKey(t + frameWindow))
- if (mouseBRecord.containsKey(t + frameWindow))
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
- MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
- MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
- MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
- MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- float distance = (float) mouseAprev.bodyPosition
- .distance(mouseAnext.bodyPosition);
- distance /= (float) (frameWindow * 2 + 1); // pour obtenir une vitesse par frame.
-
- nbVal++;
- totalDistance += distance;
-
- mouseA.speed = distance;
-
- eventTimeLine.addValue(t - firstFrame, distance);
-
- if (distance <= SPEED_THRESHOLD_1)
- {
- g2.setColor(Color.BLACK);
- g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
- }
- if ((distance > SPEED_THRESHOLD_1) && (distance < SPEED_THRESHOLD_2))
- {
- g2.setColor(Color.DARK_GRAY);
- g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
- }
- if ((distance >= SPEED_THRESHOLD_2))
- {
- g2.setColor(Color.GRAY);
- g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
- }
-
- }
- }
-
- g2.setColor(Color.red);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Mouse A speed slow=black fast=gray mean speed: " + totalDistance / nbVal;
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
-
- {
- EventTimeLine eventTimeLine = new EventTimeLine("Mouse B speed", EventType.MOUSE_B_SPEED,
- TimeLineCategory.USE_DISCRETE_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- // Mice B speed is from 0 to SPEED_THRESHOLD_1
- float nbVal = 0;
- float totalDistance = 0;
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t - frameWindow))
- if (mouseBRecord.containsKey(t - frameWindow))
- if (mouseARecord.containsKey(t + frameWindow))
- if (mouseBRecord.containsKey(t + frameWindow))
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
-
- MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
- MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
- MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
- MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- float distance = (float) mouseBprev.bodyPosition
- .distance(mouseBnext.bodyPosition);
- distance /= (float) (frameWindow * 2 + 1); // pour obtenir une vitesse par frame.
-
- mouseB.speed = distance;
- nbVal++;
- totalDistance += distance;
-
- eventTimeLine.addValue(t - firstFrame, distance);
-
- if (distance <= SPEED_THRESHOLD_1)
- {
- g2.setColor(Color.BLACK);
- g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
- }
- if ((distance > SPEED_THRESHOLD_1) && (distance < SPEED_THRESHOLD_2))
- {
- g2.setColor(Color.DARK_GRAY);
- g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
- }
- if ((distance >= SPEED_THRESHOLD_2))
- {
- g2.setColor(Color.GRAY);
- g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
- }
-
- }
- }
- g2.setColor(Color.red);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Mouse B speed slow=black fast=gray mean speed: " + totalDistance / nbVal;
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
- currentY += stepY;
- }
-
- {
- // Mouse A Stop
- boolean event = false;
- float nbEvent = 0;
- float total = 0;
-
- EventTimeLine eventTimeLine = new EventTimeLine("A Stop", EventType.A_STOP,
- TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t - frameWindow))
- if (mouseBRecord.containsKey(t - frameWindow))
- if (mouseARecord.containsKey(t + frameWindow))
- if (mouseBRecord.containsKey(t + frameWindow))
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
- MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
- MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
- MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
- MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- double distanceTPrev = mouseAprev.bodyPosition
- .distance(mouseBprev.bodyPosition);
- double distanceTNext = mouseAnext.bodyPosition
- .distance(mouseBnext.bodyPosition);
-
- if (mouseA.speed < SPEED_THRESHOLD_1)
- {
-
- eventTimeLine.addPunctualEvent(t - firstFrame);
-
- }
- else
- {
- event = false;
- }
-
- }
- }
-
- g2.setColor(Color.red);
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "A Stop : nbEvent : " + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
-
- {
- // Mouse B Stop
- boolean event = false;
- float nbEvent = 0;
- float total = 0;
-
- EventTimeLine eventTimeLine = new EventTimeLine("B Stop", EventType.B_STOP,
- TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t - frameWindow))
- if (mouseBRecord.containsKey(t - frameWindow))
- if (mouseARecord.containsKey(t + frameWindow))
- if (mouseBRecord.containsKey(t + frameWindow))
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
- MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
- MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
- MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
- MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- double distanceTPrev = mouseAprev.bodyPosition
- .distance(mouseBprev.bodyPosition);
- double distanceTNext = mouseAnext.bodyPosition
- .distance(mouseBnext.bodyPosition);
-
- if (mouseB.speed < SPEED_THRESHOLD_1)
- {
-
- eventTimeLine.addPunctualEvent(t - firstFrame);
-
- }
- else
- {
- event = false;
- }
-
- }
- }
-
- g2.setColor(Color.green);
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "B Stop : nbEvent : " + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
-
- {
- // Mouse A Speed > Mouse B Speed & Mouse A getting to B
- boolean event = false;
- float nbEvent = 0;
- float total = 0;
-
- EventTimeLine eventTimeLine = new EventTimeLine("A Speed > B Speed & A GET TO B",
- EventType.A_SPEED_HIGHER_THAN_B_SPEED_AND_A_GET_TO_B, TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t - frameWindow))
- if (mouseBRecord.containsKey(t - frameWindow))
- if (mouseARecord.containsKey(t + frameWindow))
- if (mouseBRecord.containsKey(t + frameWindow))
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
- MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
- MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
- MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
- MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- double distanceTPrev = mouseAprev.bodyPosition
- .distance(mouseBprev.bodyPosition);
- double distanceTNext = mouseAnext.bodyPosition
- .distance(mouseBnext.bodyPosition);
-
- if (mouseA.speed > mouseB.speed)
- {
- if (distanceTPrev > distanceTNext)
- {
- eventTimeLine.addPunctualEvent(t - firstFrame);
-
- mouseA.isGoingToTheOther = true;
-
- }
- else
- {
-
- }
- }
- else
- {
- event = false;
- }
-
- }
- }
-
- g2.setColor(Color.red);
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Mouse A Speed > Mouse B Speed & Mouse A getting to B : nbEvent : " + nbEvent
- + " total: " + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
- {
- // Mouse B Speed > Mouse A Speed & Mouse B getting to A
- boolean event = false;
- float nbEvent = 0;
- float total = 0;
-
- EventTimeLine eventTimeLine = new EventTimeLine("B Speed > A Speed & B GET TO A",
- EventType.B_SPEED_HIGHER_THAN_A_SPEED_AND_B_GET_TO_A, TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t - frameWindow))
- if (mouseBRecord.containsKey(t - frameWindow))
- if (mouseARecord.containsKey(t + frameWindow))
- if (mouseBRecord.containsKey(t + frameWindow))
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
- MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
- MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
- MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
- MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- double distanceTPrev = mouseAprev.bodyPosition
- .distance(mouseBprev.bodyPosition);
- double distanceTNext = mouseAnext.bodyPosition
- .distance(mouseBnext.bodyPosition);
-
- if (mouseB.speed > mouseA.speed)
- {
- if (distanceTPrev > distanceTNext)
- {
- eventTimeLine.addPunctualEvent(t - firstFrame);
-
- mouseB.isGoingToTheOther = true;
-
- }
- else
- {
-
- }
- }
- else
- {
- event = false;
- }
-
- }
- }
- g2.setColor(Color.green);
-
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Mouse B Speed > Mouse A Speed & Mouse B getting to A : nbEvent : " + nbEvent
- + " total: " + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
-
- {
- // Mouse A Speed > Mouse B Speed & Mouse A escaping from to B
-
- boolean event = false;
- float nbEvent = 0;
- float total = 0;
-
- EventTimeLine eventTimeLine = new EventTimeLine("A Speed > B Speed & A escape B",
- EventType.A_SPEED_HIGHER_THAN_B_SPEED_AND_A_ESCAPE_B, TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t - frameWindow))
- if (mouseBRecord.containsKey(t - frameWindow))
- if (mouseARecord.containsKey(t + frameWindow))
- if (mouseBRecord.containsKey(t + frameWindow))
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
- MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
- MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
- MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
- MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- double distanceTPrev = mouseAprev.bodyPosition
- .distance(mouseBprev.bodyPosition);
- double distanceTNext = mouseAnext.bodyPosition
- .distance(mouseBnext.bodyPosition);
-
- if (mouseA.speed > mouseB.speed)
- {
- if (distanceTPrev < distanceTNext)
- {
- eventTimeLine.addPunctualEvent(t - firstFrame);
-
- mouseA.isEscaping = true;
-
- }
- else
- {
-
- mouseA.isEscaping = false;
- }
- }
- else
- {
-
- }
-
- }
- }
- g2.setColor(Color.red);
-
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Mouse A Speed > Mouse B Speed & Mouse A escaping from B : nbEvent : " + nbEvent
- + " total: " + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
-
- {
- // Mouse B Speed > Mouse A Speed & Mouse B escaping from A
-
- boolean event = false;
- float nbEvent = 0;
- float total = 0;
-
- EventTimeLine eventTimeLine = new EventTimeLine("B Speed > A Speed & B escape A",
- EventType.B_SPEED_HIGHER_THAN_A_SPEED_AND_B_ESCAPE_A, TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t - frameWindow))
- if (mouseBRecord.containsKey(t - frameWindow))
- if (mouseARecord.containsKey(t + frameWindow))
- if (mouseBRecord.containsKey(t + frameWindow))
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
- MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
- MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
- MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
- MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- double distanceTPrev = mouseAprev.bodyPosition
- .distance(mouseBprev.bodyPosition);
- double distanceTNext = mouseAnext.bodyPosition
- .distance(mouseBnext.bodyPosition);
-
- if (mouseB.speed > mouseA.speed)
- {
- if (distanceTPrev < distanceTNext)
- {
-
- eventTimeLine.addPunctualEvent(t - firstFrame);
-
- mouseB.isEscaping = true;
-
- }
- else
- {
- mouseB.isEscaping = false;
-
- }
- }
- else
- {
-
- }
-
- }
- }
- g2.setColor(Color.green);
-
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Mouse B Speed > Mouse A Speed & Mouse B escaping from A : nbEvent : " + nbEvent
- + " total: " + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
-
- {
- // Mouse A going to B and finishing with contact starting from no contact.
-
- EventTimeLine eventTimeLine = new EventTimeLine(
- "Mouse A going to B and finishing with contact starting from no contact",
- EventType.A_GOTO_B_FINISH_CONTACT_START_NO_CONTACT, TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- float nbEvent = 0;
- float total = 0;
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
-
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- if (mouseA.distanceIsInferiorToThreshold1) // contact
- {
- ArrayList<Integer> timeToFill = new ArrayList<Integer>();
- // loop back if there is an approach
- for (int t2 = t; t2 > 0; t2--)
- {
- if (mouseARecord.containsKey(t2))
- {
- MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
- if (mouseAt2.isGoingToTheOther)
- {
- timeToFill.add(t2);
-
- if (!mouseAt2.distanceIsInferiorToThreshold1)
- {
- for (int t3 = t2; t3 > 0; t3--)
- {
- if (mouseARecord.containsKey(t3))
- {
- MouseInfoRecord mouseAt3 = mouseARecord.get(t3);
- if (mouseAt3.isGoingToTheOther)
- {
- timeToFill.add(t3);
- }
- else
- {
- break;
- }
- }
- }
- break;
- }
-
- }
- else // sortie de la boucle de remontee
- {
- // check if we started from a position far from the other.
- if (mouseAt2.distanceIsInferiorToThreshold1)
- timeToFill.clear();
- break;
- }
- }
- }
-
- // si le time to fill est >0 c'est qu'il a trouve qq chose.
- // il faut maintenant avancer dans le temps jusqu a la fin de l evenement
- if (timeToFill.size() > 0)
- {
- for (int t2 = t + 1; t2 < tMax; t2++)
- {
- MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
- if (mouseAt2.isGoingToTheOther)
- {
- timeToFill.add(t2);
- t = t2;
- }
- else
- {
- break;
- }
- }
- }
-
- for (int i = 0; i < timeToFill.size(); i++)
- {
- int index = timeToFill.get(i);
- MouseInfoRecord mouseAt2 = mouseARecord.get(index);
- mouseAt2.isGettingToOtherAndTouch = true;
-
- eventTimeLine.addPunctualEvent(index - firstFrame);
-
- }
-
- }
-
- }
- }
-
- g2.setColor(Color.red);
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- // System.out.println( "event. StartFrame: " + eventCriteria.startFrame + " EndFrame: " + eventCriteria.endFrame );
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Mouse A going to B and finishing with contact starting from no contact.: nbEvent : "
- + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
-
- {
- // Mouse B going to A and finishing with contact and starting from > Threshold Distance.
-
- EventTimeLine eventTimeLine = new EventTimeLine(
- "Mouse B going to A and finishing with contact and starting from no contact",
- EventType.B_GOTO_A_FINISH_CONTACT_START_NO_CONTACT, TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
-
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- if (mouseA.distanceIsInferiorToThreshold1) // contact
- {
-
- ArrayList<Integer> timeToFill = new ArrayList<Integer>();
- // loop back if there is an approach
- for (int t2 = t; t2 > 0; t2--)
- {
-
- if (mouseBRecord.containsKey(t2))
- {
- MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
- if (mouseBt2.isGoingToTheOther)
- {
- timeToFill.add(t2);
-
- if (!mouseBt2.distanceIsInferiorToThreshold1)
- {
- for (int t3 = t2; t3 > 0; t3--)
- {
- if (mouseBRecord.containsKey(t3))
- {
- MouseInfoRecord mouseBt3 = mouseBRecord.get(t3);
- if (mouseBt3.isGoingToTheOther)
- {
- timeToFill.add(t3);
- }
- else
- {
- break;
- }
- }
- }
- break;
- }
-
- }
- else // sortie de la boucle de remontee
- {
- // check if we started from a position far from the other.
- if (mouseBt2.distanceIsInferiorToThreshold1)
- timeToFill.clear();
- break;
- }
- }
- }
-
- // si le time to fill est >0 c'est qu'il a trouve qq chose.
- // il faut maintenant avancer dans le temps jusqu a la fin de l evenement
- if (timeToFill.size() > 0)
- {
- for (int t2 = t + 1; t2 < tMax; t2++)
- {
- MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
- if (mouseBt2.isGoingToTheOther)
- {
- timeToFill.add(t2);
- t = t2;
- }
- else
- {
- break;
- }
- }
- }
-
- g2.setColor(Color.green);
- if (timeToFill.size() > 0)
- nbEvent++;
- total += timeToFill.size();
- for (int i = 0; i < timeToFill.size(); i++)
- {
- int index = timeToFill.get(i);
- MouseInfoRecord mouseBt2 = mouseBRecord.get(index);
- mouseBt2.isGettingToOtherAndTouch = true;
- eventTimeLine.addPunctualEvent(index - firstFrame);
-
- }
-
- }
-
- }
- }
-
- g2.setColor(Color.green);
- // draw result
-
- nbEvent = 0;
- total = 0;
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Mouse B going to A and finishing with contact starting from no contact.: nbEvent : "
- + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
-
- {
- // Mouse A escaping after contact. finish with out threshold.
-
- EventTimeLine eventTimeLine = new EventTimeLine(
- "Mouse A escaping after contact. finish with out threshold.",
- EventType.A_ESCAPE_AFTER_CONTACT_FINISH_WITH_NO_CONTACT, TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
-
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- if (mouseA.distanceIsInferiorToThreshold1) // contact
- {
- ArrayList<Integer> timeToFill = new ArrayList<Integer>();
- // loop back if there is an approach
- for (int t2 = t; t2 < Integer.MAX_VALUE; t2++)
- {
- if (mouseARecord.containsKey(t2))
- {
- MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
- if (mouseAt2.isEscaping)
- {
- timeToFill.add(t2);
-
- if (!mouseAt2.distanceIsInferiorToThreshold1)
- {
-
- for (int t3 = t2; t3 < tMax; t3++)
- {
- if (mouseARecord.containsKey(t3))
- {
- MouseInfoRecord mouseAt3 = mouseARecord.get(t3);
- if (mouseAt3.isEscaping)
- {
- timeToFill.add(t3);
- }
- else
- {
- break;
- }
- }
- }
- break;
- }
-
- }
- else // sortie de la boucle de remontee
- {
- // check if we started from a position far from the other.
- if (mouseAt2.distanceIsInferiorToThreshold1)
- timeToFill.clear();
- break;
- }
- }
- else
- {
- break;
- }
- }
- g2.setColor(Color.red);
- if (timeToFill.size() > 0)
- nbEvent++;
- total += timeToFill.size();
-
- for (int i = 0; i < timeToFill.size(); i++)
- {
- int index = timeToFill.get(i);
- MouseInfoRecord mouseAt2 = mouseARecord.get(index);
- mouseAt2.isEscapingFromOtherAndUnTouch = true;
- eventTimeLine.addPunctualEvent(index - firstFrame);
-
- }
- t += timeToFill.size();
- }
-
- }
- }
- g2.setColor(Color.red);
-
- // draw result
- nbEvent = 0;
- total = 0;
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Mouse A escaping after contact and finish out of distance threshold. : nbEvent : "
- + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
-
- {
- // Mouse B escaping after contact. finish with out threshold.
-
- EventTimeLine eventTimeLine = new EventTimeLine(
- "Mouse B escaping after contact. finish with out threshold.",
- EventType.B_ESCAPE_AFTER_CONTACT_FINISH_WITH_NO_CONTACT, TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
-
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- if (mouseA.distanceIsInferiorToThreshold1) // contact
- {
- ArrayList<Integer> timeToFill = new ArrayList<Integer>();
- // loop back if there is an approach
- for (int t2 = t; t2 < Integer.MAX_VALUE; t2++)
- {
- if (mouseBRecord.containsKey(t2))
- {
- MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
- if (mouseBt2.isEscaping)
- {
- timeToFill.add(t2);
-
- if (!mouseBt2.distanceIsInferiorToThreshold1)
- {
-
- for (int t3 = t2; t3 < tMax; t3++)
- {
- if (mouseBRecord.containsKey(t3))
- {
- MouseInfoRecord mouseBt3 = mouseBRecord.get(t3);
- if (mouseBt3.isEscaping)
- {
- timeToFill.add(t3);
- }
- else
- {
- break;
- }
- }
- }
- break;
- }
-
- }
- else
- {
-
- if (mouseBt2.distanceIsInferiorToThreshold1)
- timeToFill.clear();
- break;
- }
- }
- else
- {
- break;
- }
- }
- g2.setColor(Color.green);
- if (timeToFill.size() > 0)
- nbEvent++;
- total += timeToFill.size();
-
- for (int i = 0; i < timeToFill.size(); i++)
- {
- int index = timeToFill.get(i);
- MouseInfoRecord mouseBt2 = mouseBRecord.get(index);
- mouseBt2.isEscapingFromOtherAndUnTouch = true;
-
- eventTimeLine.addPunctualEvent(index - firstFrame);
-
- }
- t += timeToFill.size();
- }
-
- }
- }
- g2.setColor(Color.green);
-
- nbEvent = 0;
- total = 0;
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Mouse B escaping after contact and finish out of distance threshold : nbEvent : "
- + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
-
- {
- // Mouse A get to mouse B and B escape with threshold distance in and out.
-
- EventTimeLine eventTimeLine = new EventTimeLine("A get to B and B escape threshold in and out",
- EventType.A_GOTO_B_AND_B_ESCAPE_THRESHOLD_IN_OUT, TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
-
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- if (mouseA.isGettingToOtherAndTouch) // contact
- {
- ArrayList<Integer> timeToFill = new ArrayList<Integer>();
-
- boolean step1ok = false;
- boolean step2ok = false;
- boolean step3ok = false;
-
- int seeker = t;
-
- // STEP 1
-
- for (int t2 = seeker; t2 < tMax; t2++)
- {
- seeker = t2;
- if (mouseARecord.containsKey(t2))
- {
- MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
- if (mouseAt2.isGettingToOtherAndTouch)
- {
- timeToFill.add(t2);
- }
- else // sortie de la boucle de remontee
- {
- step1ok = true;
- break;
- }
- }
- }
-
- // STEP 2
-
- for (int t2 = seeker; t2 < tMax; t2++)
- {
- seeker = t2;
- if (mouseARecord.containsKey(t2))
- {
- MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
- if (mouseAt2.distanceIsInferiorToThreshold1)
- {
- timeToFill.add(t2);
- }
- else // sortie de la boucle de remontee
- {
- step2ok = true;
- break;
- }
- }
- }
-
- // STEP 3
-
- for (int t2 = seeker; t2 < tMax; t2++)
- {
- seeker = t2;
- if (mouseBRecord.containsKey(t2))
- {
- MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
- if (mouseBt2.isEscapingFromOtherAndUnTouch)
- {
- timeToFill.add(t2);
- step3ok = true;
- }
- else // sortie de la boucle de remontee
- {
- break;
- }
- }
- }
-
- if (!(step1ok && step2ok && step3ok))
- {
- timeToFill.clear();
- }
-
- g2.setColor(Color.red);
- if (timeToFill.size() > 0)
- nbEvent++;
- total += timeToFill.size();
-
- for (int i = 0; i < timeToFill.size(); i++)
- {
- int index = timeToFill.get(i);
- MouseInfoRecord mouseBt2 = mouseBRecord.get(index);
- mouseBt2.isEscapingFromOtherAndUnTouch = true;
-
- eventTimeLine.addPunctualEvent(index - firstFrame);
-
- mouseARecord.get(index).mouseGetToOtherMouseAndOtherEscapeInOut = true;
- }
- t += timeToFill.size();
- }
-
- }
- }
-
- g2.setColor(Color.red);
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- g2.drawLine(0, currentY + 1, imageChrono.getWidth(), currentY + 1);
-
- String string = "Mouse A get to mouse B and B escape with threshold distance in and out : nbEvent : "
- + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
-
- {
- // Mouse B get to mouse A and A escape with threshold distance in and out
-
- EventTimeLine eventTimeLine = new EventTimeLine("B get to A and A escape threshold in and out",
- EventType.B_GOTO_A_AND_A_ESCAPE_THRESHOLD_IN_OUT, TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
-
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- if (mouseB.isGettingToOtherAndTouch) // contact
- {
- ArrayList<Integer> timeToFill = new ArrayList<Integer>();
- // loop forward to the contact.
-
- boolean step1ok = false;
- boolean step2ok = false;
- boolean step3ok = false;
-
- int seeker = t;
-
- // STEP 1
-
- for (int t2 = seeker; t2 < tMax; t2++)
- {
- seeker = t2;
- if (mouseBRecord.containsKey(t2))
- {
- MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
- if (mouseBt2.isGettingToOtherAndTouch)
- {
- timeToFill.add(t2);
- }
- else // sortie de la boucle de remontee
- {
- step1ok = true;
- break;
- }
- }
- }
-
- // STEP 2
-
- for (int t2 = seeker; t2 < tMax; t2++)
- {
- seeker = t2;
- if (mouseBRecord.containsKey(t2))
- {
- MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
- if (mouseBt2.distanceIsInferiorToThreshold1)
- {
- timeToFill.add(t2);
- }
- else // sortie de la boucle de remontee
- {
- step2ok = true;
- break;
- }
- }
- }
-
- // STEP 3
-
- for (int t2 = seeker; t2 < tMax; t2++)
- {
- seeker = t2;
- if (mouseARecord.containsKey(t2))
- {
- MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
- if (mouseAt2.isEscapingFromOtherAndUnTouch)
- {
- timeToFill.add(t2);
- step3ok = true;
- }
- else // sortie de la boucle de remontee
- {
- break;
- }
- }
- }
-
- if (!(step1ok && step2ok && step3ok))
- {
- timeToFill.clear();
- }
-
- g2.setColor(Color.green);
- if (timeToFill.size() > 0)
- nbEvent++;
- total += timeToFill.size();
-
- for (int i = 0; i < timeToFill.size(); i++)
- {
- int index = timeToFill.get(i);
- MouseInfoRecord mouseAt2 = mouseARecord.get(index);
- mouseAt2.isEscapingFromOtherAndUnTouch = true;
-
- eventTimeLine.addPunctualEvent(index - firstFrame);
-
- mouseBRecord.get(index).mouseGetToOtherMouseAndOtherEscapeInOut = true;
- }
- t += timeToFill.size();
- }
-
- }
- }
- g2.setColor(Color.green);
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Mouse B get to mouse A and A escape with threshold distance in and out : nbEvent : "
- + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
-
- {
- // Mouse A get to mouse B and A escape with threshold distance in and out.
-
- EventTimeLine eventTimeLine = new EventTimeLine("A get to B and A escape threshold in and out",
- EventType.A_GOTO_B_AND_A_ESCAPE_THRESHOLD_IN_OUT, TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
-
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- if (mouseA.isGettingToOtherAndTouch) // contact
- {
- ArrayList<Integer> timeToFill = new ArrayList<Integer>();
- // loop forward to the contact.
-
- boolean step1ok = false;
- boolean step2ok = false;
- boolean step3ok = false;
-
- int seeker = t;
-
- // STEP 1
-
- for (int t2 = seeker; t2 < tMax; t2++)
- {
- seeker = t2;
- if (mouseARecord.containsKey(t2))
- {
- MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
- if (mouseAt2.isGettingToOtherAndTouch)
- {
- timeToFill.add(t2);
- step1ok = true; // maintenant ici
- }
- else // sortie de la boucle de remontee
- {
- // step1ok = true; avant la
- break;
- }
- }
- }
-
- // STEP 2
-
- for (int t2 = seeker; t2 < tMax; t2++)
- {
- seeker = t2;
- if (mouseARecord.containsKey(t2))
- {
- MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
- if (mouseAt2.distanceIsInferiorToThreshold1)
- {
- timeToFill.add(t2);
- step2ok = true; // mainetnant ici
- }
- else // sortie de la boucle de remontee
- {
- // step2ok = true; avant la
- break;
- }
- }
- }
-
- // STEP 3
-
- for (int t2 = seeker; t2 < tMax; t2++)
- {
- seeker = t2;
- if (mouseARecord.containsKey(t2))
- {
- MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
- if (mouseAt2.isEscapingFromOtherAndUnTouch)
- {
- timeToFill.add(t2);
- step3ok = true;
- }
- else // sortie de la boucle de remontee
- {
- break;
- }
- }
- }
-
- if (!(step1ok && step2ok && step3ok))
- {
- timeToFill.clear();
- }
-
- g2.setColor(Color.red);
- if (timeToFill.size() > 0)
- nbEvent++;
- total += timeToFill.size();
- for (int i = 0; i < timeToFill.size(); i++)
- {
- int index = timeToFill.get(i);
- MouseInfoRecord mouseBt2 = mouseBRecord.get(index);
- mouseBt2.isEscapingFromOtherAndUnTouch = true;
-
- eventTimeLine.addPunctualEvent(index - firstFrame);
-
- mouseARecord.get(index).mouseGetToOtherMouseAndEscapeInOut = true;
- }
- t += timeToFill.size();
- }
-
- }
- }
- g2.setColor(Color.red);
-
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- g2.drawLine(0, currentY + 1, imageChrono.getWidth(), currentY + 1);
- String string = "Mouse A get to mouse B and A escape with threshold distance in and out : nbEvent : "
- + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
-
- {
- // Mouse B get to mouse A and B escape with threshold distance in and out
-
- EventTimeLine eventTimeLine = new EventTimeLine("B get to A and B escape threshold in and out",
- EventType.B_GOTO_A_AND_B_ESCAPE_THRESHOLD_IN_OUT, TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
-
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- if (mouseB.isGettingToOtherAndTouch) // contact
- {
- ArrayList<Integer> timeToFill = new ArrayList<Integer>();
- // loop forward to the contact.
-
- boolean step1ok = false;
- boolean step2ok = false;
- boolean step3ok = false;
-
- int seeker = t;
-
- // STEP 1
-
- for (int t2 = seeker; t2 < tMax; t2++)
- {
- seeker = t2;
- if (mouseBRecord.containsKey(t2))
- {
- MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
- if (mouseBt2.isGettingToOtherAndTouch)
- {
- timeToFill.add(t2);
- step1ok = true; // maintenant ici
- }
- else // sortie de la boucle de remontee
- {
- // avant ici step1ok = true;
- break;
- }
- }
- }
-
- // STEP 2
-
- for (int t2 = seeker; t2 < tMax; t2++)
- {
- seeker = t2;
- if (mouseBRecord.containsKey(t2))
- {
- MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
- if (mouseBt2.distanceIsInferiorToThreshold1)
- {
- timeToFill.add(t2);
- step2ok = true; // mis ici
- }
- else // sortie de la boucle de remontee
- {
- // step2ok = true; avant ici
- break;
- }
- }
- }
-
- // STEP 3
-
- for (int t2 = seeker; t2 < tMax; t2++)
- {
- seeker = t2;
- if (mouseBRecord.containsKey(t2))
- {
- MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
- if (mouseBt2.isEscapingFromOtherAndUnTouch)
- {
- timeToFill.add(t2);
- step3ok = true;
- }
- else // sortie de la boucle de remontee
- {
- break;
- }
- }
- }
-
- if (!(step1ok && step2ok && step3ok))
- {
- timeToFill.clear();
- }
-
- g2.setColor(Color.green);
- if (timeToFill.size() > 0)
- nbEvent++;
- total += timeToFill.size();
-
- for (int i = 0; i < timeToFill.size(); i++)
- {
- int index = timeToFill.get(i);
- MouseInfoRecord mouseAt2 = mouseARecord.get(index);
- mouseAt2.isEscapingFromOtherAndUnTouch = true;
- eventTimeLine.addPunctualEvent(index - firstFrame);
-
- mouseBRecord.get(index).mouseGetToOtherMouseAndEscapeInOut = true;
- }
- t += timeToFill.size();
-
- }
-
- }
- }
- g2.setColor(Color.green);
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Mouse B get to mouse A and B escape with threshold distance in and out : nbEvent : "
- + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
-
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
-
- {
- // Event de poursuite.
- // A Poursuit B
- // =
- // A est en mouvement
- // B est en mouvement
- // A est derriere B ou A est sur le cote de B
- // Distance A-B inferieure a Threshold 2 ( le plus loin )
-
- EventTimeLine eventTimeLine = new EventTimeLine("A follow B", EventType.A_FOLLOW_B,
- TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
-
- EventCriteria currentCriteria = null;
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
-
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- double distanceHeadABodyB = mouseA.headPosition.distanceSq(mouseB.bodyPosition);
- double distanceHeadAHeadB = mouseA.headPosition.distanceSq(mouseB.headPosition);
- double distanceBodyABodyB = mouseA.bodyPosition.distanceSq(mouseB.bodyPosition);
- double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq(mouseB.headPosition);
-
- if (mouseB.distanceIsInferiorToThreshold2 // moins precis mais moins de bruit
-
- && mouseA.speed > SPEED_THRESHOLD_2 && mouseB.speed > SPEED_THRESHOLD_2
- && (mouseA.isBehindTheOther || mouseA.isBesideTheOther)
-
- ) // contact threshold 2
- {
- eventTimeLine.addPunctualEvent(t - firstFrame);
-
- }
-
- }
- }
- // filter results
-
- eventTimeLine.removeEventLessThanLength(3);
-
- g2.setColor(Color.RED);
- // display result.
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Mouse A poursuit B : nbEvent : " + nbEvent + " total time: " + total / FPS + "s";
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
-
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
-
- {
- // A est derriere B et B est derriere A
- // A est à l'arret et B est à l'arret
- // distance superieure a Threshold 2
- // back to back
- // angle formé inferieur a ANGLE dans le code ( 0.52d Rad )
-
- EventTimeLine eventTimeLine = new EventTimeLine("back to back", EventType.A_BEHIND_B_AND_B_BEHIND_A,
- TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
-
- EventCriteria currentCriteria = null;
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
-
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- double distanceHeadABodyB = mouseA.headPosition.distanceSq(mouseB.bodyPosition);
- double distanceHeadAHeadB = mouseA.headPosition.distanceSq(mouseB.headPosition);
- double distanceBodyABodyB = mouseA.bodyPosition.distanceSq(mouseB.bodyPosition);
- double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq(mouseB.headPosition);
-
- double VAx = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
- double VAy = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
- double angleA = Math.atan2(VAy, VAx);
-
- double VBx = mouseB.headPosition.getX() - mouseB.bodyPosition.getX();
- double VBy = mouseB.headPosition.getY() - mouseB.bodyPosition.getY();
- double angleB = Math.atan2(VBy, VBx);
-
- // angle fait par le segment qui va de la souris A a la souris B.
-
- double VABx = mouseB.bodyPosition.getX() - mouseA.bodyPosition.getX();
- double VABy = mouseB.bodyPosition.getY() - mouseA.bodyPosition.getY();
- double angleAB = Math.atan2(VABy, VABx);
-
- angleB = angleB - Math.PI;
-
- // on recale les angles pour les rendres comparables
-
- // recherche de la plus petite difference entre les angles.
-
- double minAngle = Double.MAX_VALUE;
- for (double a = -4; a < 5; a++)
- {
- double testVal = Math.abs(angleB + 2 * Math.PI * a - angleA);
- if (testVal < minAngle)
- minAngle = testVal;
- }
-
- double minAngleABwithA = Double.MAX_VALUE;
- for (double a = -4; a < 5; a++)
- {
- double testVal = Math.abs(angleA + Math.PI * a - angleAB);
- if (testVal < minAngleABwithA)
- minAngleABwithA = testVal;
- }
-
- double minAngleABwithB = Double.MAX_VALUE;
- for (double a = -4; a < 5; a++)
- {
- double testVal = Math.abs(angleB + Math.PI * a - angleAB);
- if (testVal < minAngleABwithB)
- minAngleABwithB = testVal;
- }
-
- if (mouseA.speed < SPEED_THRESHOLD_1 && mouseB.speed < SPEED_THRESHOLD_1)
- if (!mouseA.distanceIsInferiorToThreshold2) // distance > Threshold 2
- if (minAngle < 0.52d && mouseA.isBehindTheOther && mouseB.isBehindTheOther) // && !mouseA.distanceIsInferiorToThreshold1 )
- // // premier argument trouve angle opposé et
- // l'autre force culcul
- if (minAngleABwithA < 0.52d)
- if (minAngleABwithB < 0.52d)
- {
- eventTimeLine.addPunctualEvent(t - firstFrame);
- }
-
- }
- }
- // filter results
-
- eventTimeLine.removeEventLessThanLength(3);
-
- g2.setColor(Color.gray);
- // display result.
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Back to back: nbEvent : " + nbEvent + " total time: " + total / FPS + "s";
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
- }
-
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
-
- // A regarde l'autre souris
- //
- {
- EventTimeLine eventTimeLine = new EventTimeLine("A can see B", EventType.A_CAN_SEE_B,
- TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
-
- EventCriteria currentCriteria = null;
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
-
- // ---------------------
-
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- double distanceHeadABodyB = mouseA.headPosition.distanceSq(mouseB.bodyPosition);
- double distanceHeadAHeadB = mouseA.headPosition.distanceSq(mouseB.headPosition);
- double distanceBodyABodyB = mouseA.bodyPosition.distanceSq(mouseB.bodyPosition);
- double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq(mouseB.headPosition);
-
- double VAx = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
- double VAy = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
- double angleA = Math.atan2(VAy, VAx);
-
- // teste A dans la vue.
-
- double VABx = mouseA.headPosition.getX() - mouseB.headPosition.getX();
- double VABy = mouseA.headPosition.getY() - mouseB.headPosition.getY();
- double angleBA = Math.atan2(VABy, VABx) + Math.PI;
-
- boolean eventIsOk = true;
-
- // if ( angleMin( angleBA , angleB ) < Math.PI / 2f )
- if (angleMin(angleBA, angleA) < demiVisionDeSouris)
- {
- // eventTimeLine.addPunctualEvent(t - firstFrame );
- }
- else
- {
- eventIsOk = false;
- }
-
- if (mouseA.distanceIsInferiorToThreshold2)
- {
- eventIsOk = false;
- }
- // ------------------------
- // flag l'event s'il est bon.
- if (eventIsOk)
- {
- eventTimeLine.addPunctualEvent(t - firstFrame);
- }
-
- }
- }
- // filter results
-
- eventTimeLine.removeEventLessThanLength(3);
-
- g2.setColor(Color.RED);
- // display result.
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Mouse A can see B: nbEvent : " + nbEvent + " total time: " + total / FPS + "s";
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
-
- }
-
- // B regarde l'autre souris
- //
- {
- EventTimeLine eventTimeLine = new EventTimeLine("B can see A", EventType.B_CAN_SEE_A,
- TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(eventTimeLine);
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
-
- EventCriteria currentCriteria = null;
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
-
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- double distanceHeadABodyB = mouseA.headPosition.distanceSq(mouseB.bodyPosition);
- double distanceHeadAHeadB = mouseA.headPosition.distanceSq(mouseB.headPosition);
- double distanceBodyABodyB = mouseA.bodyPosition.distanceSq(mouseB.bodyPosition);
- double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq(mouseB.headPosition);
-
- double VBx = mouseB.headPosition.getX() - mouseB.bodyPosition.getX();
- double VBy = mouseB.headPosition.getY() - mouseB.bodyPosition.getY();
- double angleB = Math.atan2(VBy, VBx);
-
- // teste A dans la vue.
-
- double VBAx = mouseB.headPosition.getX() - mouseA.headPosition.getX();
- double VBAy = mouseB.headPosition.getY() - mouseA.headPosition.getY();
- double angleBA = Math.atan2(VBAy, VBAx) + Math.PI;
-
- boolean eventIsOk = true;
-
- if (angleMin(angleBA, angleB) < demiVisionDeSouris)
- {
-
- }
- else
- {
- eventIsOk = false;
- }
-
- // flag l'event s'il est bon.
- if (eventIsOk)
- {
- eventTimeLine.addPunctualEvent(t - firstFrame);
- }
-
- }
- }
- // filter results
-
- eventTimeLine.removeEventLessThanLength(3);
-
- g2.setColor(Color.GREEN);
- // display result.
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = "Mouse B can see A: nbEvent : " + nbEvent + " total time: " + total / FPS + "s";
- g2.drawString(string, 0, currentY + 12);
- imageComponent.stringList.add(string);
-
- currentY += stepY;
-
- }
-
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
-
- currentY = loadExtraLabelXMLFile(file, currentY, g2);
- currentY = loadExtraLabelAviSoftTXTFile(file, currentY, g2);
-
- Icy.getMainInterface().getSwimmingPool().add(swimmingObject);
-
- }
-
- private File getExtraXMLFile(File originalFile)
- {
- File extraFile = new File(FileUtil.setExtension(file.getAbsolutePath(), ".extra.xml"));
- return extraFile;
- }
-
- private File getExtraAviSoftTXTFile(File originalFile)
- {
- File extraFile = new File(FileUtil.setExtension(file.getAbsolutePath(), ".avisoft.txt"));
- return extraFile;
- }
-
- private File getExtraAviSoftXLSFile(File originalFile)
- {
- File extraFile = new File(FileUtil.setExtension(file.getAbsolutePath(), ".avisoft.xls"));
- return extraFile;
- }
-
- private int getNbExtraEvent(File originalFile)
- {
-
- int nbExtraEvent = 0;
-
- {
- File extraFile = getExtraXMLFile(originalFile);
- if (extraFile.exists())
- {
-
- Document xmlDocument = XMLUtil.loadDocument(extraFile);
- ArrayList<Element> labelElementList = XMLUtil.getElements(XMLUtil.getRootElement(xmlDocument),
- "LABEL");
-
- System.out.println("Number of extra user labels (XML): " + labelElementList.size());
-
- nbExtraEvent += labelElementList.size();
-
- }
- }
-
- {
- File extraFile = getExtraAviSoftTXTFile(originalFile);
- if (extraFile.exists())
- {
- // nlabel type duration interval starttime endtime pstart_time pstart pstart_ampl pend_time pend pend_ampl pmin_time pmin pmin_ampl
- // pmax_time pmax pmax_ampl
-
- // Pattern pattern = Pattern.compile("(\t)(.*?)(\t)"); // finds string between tabs.
- int nbElement = 0;
-
- HashMap<String, Integer> eventFoundHashMap = new HashMap<String, Integer>();
-
- try
- {
-
- Scanner scanner = new Scanner(extraFile);
-
- while (scanner.hasNextLine())
- {
- int line = scanner.nextInt();
- String labelName = scanner.next();
-
- // if ( labelName == null ) continue;
-
- int nbLabelWithThisName = 0;
- if (eventFoundHashMap.containsKey(labelName))
- {
- nbLabelWithThisName = eventFoundHashMap.get(labelName);
- }
- eventFoundHashMap.put(labelName, nbLabelWithThisName + 1);
-
- scanner.nextLine();
- }
-
- for (String labelName : eventFoundHashMap.keySet())
- {
- System.out.println("Label Name : " + labelName + " #" + eventFoundHashMap.get(labelName));
- }
-
- nbElement += eventFoundHashMap.keySet().size();
-
- }
- catch (FileNotFoundException e)
- {
- e.printStackTrace();
- }
-
- System.out.println("Number of extra user labels (AviSoft TXT): " + nbElement);
-
- nbExtraEvent += nbElement;
- }
- }
-
- {
- File extraFile = getExtraAviSoftXLSFile(originalFile);
- if (extraFile.exists())
- {
- // nlabel type duration interval starttime
-
- // Pattern pattern = Pattern.compile("(\t)(.*?)(\t)"); // finds string between tabs.
- int nbElement = 0;
-
- HashMap<String, Integer> eventFoundHashMap = new HashMap<String, Integer>();
-
- try
- {
-
- Workbook workbook = Workbook.getWorkbook(extraFile);
-
- Sheet sheet = workbook.getSheet(0);
- int nbRow = sheet.getRows();
- System.out.println("Number of row in excel file: " + nbRow);
-
- int row = 1;
- while (row < nbRow)
- {
- String labelName = sheet.getCell(1, row).getContents();
-
- int nbLabelWithThisName = 0;
- if (eventFoundHashMap.containsKey(labelName))
- {
- nbLabelWithThisName = eventFoundHashMap.get(labelName);
- }
- eventFoundHashMap.put(labelName, nbLabelWithThisName + 1);
-
- row++;
- }
-
- for (String labelName : eventFoundHashMap.keySet())
- {
- System.out.println("Label Name : " + labelName + " #" + eventFoundHashMap.get(labelName));
- }
-
- nbElement += eventFoundHashMap.keySet().size();
-
- }
- catch (FileNotFoundException e)
- {
- e.printStackTrace();
- }
- catch (BiffException e)
- {
- // TODO Auto-generated catch block
- e.printStackTrace();
- }
- catch (IOException e)
- {
- // TODO Auto-generated catch block
- e.printStackTrace();
- }
-
- System.out.println("Number of extra user labels (AviSoft XLS): " + nbElement);
-
- nbExtraEvent += nbElement;
- }
- }
-
- return nbExtraEvent;
- }
-
- private int loadExtraLabelAviSoftTXTFile(File originalFile, int currentY, Graphics2D g2)
- {
-
- File extraFile = getExtraAviSoftTXTFile(originalFile);
- if (extraFile.exists())
- {
- // nlabel type duration interval starttime endtime pstart_time pstart pstart_ampl pend_time pend pend_ampl pmin_time pmin pmin_ampl pmax_time
- // pmax pmax_ampl
-
- // Pattern pattern = Pattern.compile("(\t)(.*?)(\t)"); // finds string between tabs.
- int nbElement = 0;
-
- HashMap<String, EventTimeLine> eventTimeLineHashMap = new HashMap<String, EventTimeLine>();
- /*
- * EventTimeLine userEvent = new EventTimeLine( userLabelName ,
- * EventType.USER_EVENT , TimeLineCategory.USE_BOOLEAN_EVENT );
- * animal.eventTimeLineList.add( userEvent );
- */
-
- try
- {
-
- loadDefaultUserEventSet(eventTimeLineHashMap, originalFile);
-
- Scanner scanner = new Scanner(extraFile);
-
- while (scanner.hasNextLine())
- {
- int lineNumber = scanner.nextInt(); // scan line number
- System.out.println("next line number : " + lineNumber);
-
- String labelName = scanner.next();
-
- /*
- * int nbLabelWithThisName = 0;
- * if ( eventFoundHashMap.containsKey( labelName ) )
- * {
- * nbLabelWithThisName = eventFoundHashMap.get( labelName );
- * }
- * eventFoundHashMap.put( labelName , nbLabelWithThisName+1 );
- */
- // System.out.print( "label name: " + labelName + ":");
- EventTimeLine userEvent = null;
- // for ( String keyString : eventTimeLineHashMap.keySet() )
- // {
- // if ( keyString.equals( labelName ) )
- // {
- // userEvent = eventTimeLineHashMap.get( labelName );
- // //System.out.print( ":found:");
- // break;
- // }
- // }
- if (eventTimeLineHashMap.containsKey(labelName)) // retreive EventTimeLine
- {
- userEvent = eventTimeLineHashMap.get(labelName);
- }
- else
-
- // if (userEvent == null ) // means it was not found in keyset.
- { // creates a new eventTimeLine for this label.
- userEvent = new EventTimeLine(labelName, EventType.USER_EVENT,
- TimeLineCategory.USE_BOOLEAN_EVENT);
- eventTimeLineHashMap.put(labelName, userEvent);
- animal.eventTimeLineList.add(userEvent);
- }
-
- float duration = scanner.nextFloat();
- float interval = scanner.nextFloat();
- float startTime = scanner.nextFloat();
-
- int durationInFrame = (int) (FPS * duration);
- int startTimeInFrame = (int) (FPS * startTime);
-
- // System.out.println( "line: " + line + " l:" + labelName + " s:" + startTime + " d:" + duration );
-
- for (int t = startTimeInFrame; t <= startTimeInFrame + durationInFrame; t++)
- {
- userEvent.addPunctualEvent(t - firstFrame);
- // System.out.print("a");
- }
- // System.out.println( "");
- if (scanner.hasNextLine()) // flush what remains in this line.
- {
- scanner.nextLine();
- }
- }
-
- scanner.close();
-
- // display label found
- ArrayList keys = new ArrayList(eventTimeLineHashMap.keySet());
- Collections.sort(keys);
- // for ( EventTimeLine eventTimeLine : eventTimeLineHashMap.values() )
- // for ( Object key : keys )
- for (int iTimeLine = 29; iTimeLine < animal.eventTimeLineList.size(); iTimeLine++)
- {
- // EventTimeLine eventTimeLine = eventTimeLineHashMap.get( key );
- EventTimeLine eventTimeLine = animal.eventTimeLineList.get(iTimeLine);
- // EventTimeLine eventTimeLine = eventTimeLineHashMap.get( eventTimeLineString );
- System.out.println("Processing eventTimeLine... " + eventTimeLine.criteriaName + " nb event : "
- + eventTimeLine.eventList.size());
- nbElement++;
-
- int nbEvent = 0;
- int total = 0;
- // draw result
- g2.setColor(Color.BLUE);
- for (EventCriteria eventCriteria : eventTimeLine.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.BLACK);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = eventTimeLine.criteriaName + " nb event: " + nbEvent + " totalT: "
- + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
-
- currentY += stepY;
-
- imageComponent.stringList.add(string);
-
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
-
- }
-
- }
- catch (FileNotFoundException e)
- {
- e.printStackTrace();
- }
-
- System.out.println("Number of extra user labels (AviSoft): " + nbElement);
-
- }
-
- return currentY;
-
- }
-
- /**
- * Loads a number of default user event set to force their presence in the list, and in a specific order.
- * Then those events can be compared in the label analyser as they appear at the same line index event.
- * (event 29 will be always the same)
- * Loads the file in the folder call defaultUserEvents.txt
- * Example of what it can contain:
- * s
- * f
- * u
- * d
- * mo
- * c
- * j1
- * j2
- * mi
- * n
- * o
- *
- * @param eventTimeLineHashMap
- * @param originalFile
- */
- private void loadDefaultUserEventSet(HashMap<String, EventTimeLine> eventTimeLineHashMap, File originalFile)
- {
-
- File defaultUserEventSetFile = new File(
- FileUtil.getDirectory(originalFile.getAbsolutePath()) + "//defaultUserEvents.txt");
-
- System.out.println("DefaultUserEventFile is: " + defaultUserEventSetFile.getAbsolutePath());
-
- if (FileUtil.exists(defaultUserEventSetFile.getAbsolutePath()))
- {
- System.out.println("Loading default User events...");
-
- try
- {
- Scanner scanner = new Scanner(defaultUserEventSetFile);
-
- while (scanner.hasNextLine())
- {
- String labelName = scanner.nextLine();
- System.out.println(labelName);
- EventTimeLine userEvent = new EventTimeLine(labelName, EventType.USER_EVENT,
- TimeLineCategory.USE_BOOLEAN_EVENT);
- eventTimeLineHashMap.put(labelName, userEvent);
- animal.eventTimeLineList.add(userEvent);
- }
-
- scanner.close();
-
- }
- catch (FileNotFoundException e)
- {
- e.printStackTrace();
- }
-
- }
-
- /*
- * String labelName = "";
- * EventTimeLine userEvent = new EventTimeLine( labelName ,
- * EventType.USER_EVENT , TimeLineCategory.USE_BOOLEAN_EVENT );
- * eventTimeLineHashMap.put( labelName, userEvent );
- * animal.eventTimeLineList.add( userEvent );
- */
-
- }
-
- private int loadExtraLabelXMLFile(File originalFile, int currentY, Graphics2D g2)
- {
-
- // load labels generated by user ( file extra.xml )
- File extraFile = getExtraXMLFile(originalFile);
-
- System.out.println("XML file is: " + file.getAbsolutePath());
- System.out.println("Extra XML file is: " + extraFile.getAbsolutePath());
-
- if (!extraFile.exists())
- return currentY;
-
- System.out.println("The extra info file exists... Processing...");
-
- Document xmlDocument = XMLUtil.loadDocument(extraFile);
-
- /** offset to shit in time the incoming labels, in order to sync them if needed. */
- int offset = 0;
-
- ArrayList<Element> labelElementListOffset = XMLUtil.getElements(XMLUtil.getRootElement(xmlDocument),
- "OFFSET");
- for (Element labelElement : labelElementListOffset)
- {
- offset = XMLUtil.getAttributeIntValue(labelElement, "offset", 0);
- }
-
- /** min duration event */
- int minDurationEvent = 0;
-
- ArrayList<Element> labelElementListMinDuration = XMLUtil.getElements(XMLUtil.getRootElement(xmlDocument),
- "MINDURATION");
- for (Element labelElement : labelElementListMinDuration)
- {
- minDurationEvent = XMLUtil.getAttributeIntValue(labelElement, "minduration", 0);
- }
-
- ArrayList<Element> labelElementList = XMLUtil.getElements(XMLUtil.getRootElement(xmlDocument), "LABEL");
-
- for (Element labelElement : labelElementList)
- {
-
- String userLabelName = XMLUtil.getAttributeValue(labelElement, "name", "no name");
- String userLabelColorString = XMLUtil.getAttributeValue(labelElement, "color", "green");
-
- System.out.println("Loading label " + userLabelName);
-
- Color userEventColor = null;
- try
- {
- Field field = Class.forName("java.awt.Color").getField(userLabelColorString);
- userEventColor = (Color) field.get(null);
- }
- catch (Exception e)
- {
- userEventColor = Color.green; // Not defined
- System.err.println("Unsupported color in label " + userLabelName + " (switching to green)");
- }
-
- // create node
-
- int nbEvent = 0;
- int total = 0;
-
- EventTimeLine userEvent = new EventTimeLine(userLabelName, EventType.USER_EVENT,
- TimeLineCategory.USE_BOOLEAN_EVENT);
- animal.eventTimeLineList.add(userEvent);
-
- synchronizeAllAnimalEvent(userEvent);
-
- g2.setColor(userEventColor);
-
- // read events.
- ArrayList<Element> labelEventList = XMLUtil.getElements(labelElement, "EVENT");
-
- for (Element labelEvent : labelEventList)
- {
- int start = XMLUtil.getAttributeIntValue(labelEvent, "start", -1);
- int end = XMLUtil.getAttributeIntValue(labelEvent, "end", -1);
-
- if (start == -1)
- {
- System.err.println("Error in label " + userLabelName);
- System.err.println("Wrong start value (skipping event)");
- continue;
- }
-
- if (end == -1)
- {
- System.err.println("Error in label " + userLabelName);
- System.err.println("Wrong end value (skipping event)");
- continue;
- }
-
- if (start > end)
- {
- System.err.println("Error in label " + userLabelName);
- System.err.println("start value > end value (skipping event)");
- continue;
- }
-
- start += offset;
- end += offset;
-
- // check minduration event: if the event is smaller than mindurationevent, create an event of the correct length from start.
-
- if (end - start < minDurationEvent)
- {
- end = start + minDurationEvent;
- }
-
- for (int t = start; t <= end; t++)
- {
- userEvent.addPunctualEvent(t - firstFrame);
- }
- }
-
- nbEvent = 0;
- total = 0;
- // draw result
- for (EventCriteria eventCriteria : userEvent.eventList)
- {
- nbEvent++;
- total += eventCriteria.getLength();
- for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
- {
- g2.drawLine(i, currentY, i, currentY + stepY);
- }
- }
-
- g2.setColor(Color.black);
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- String string = userLabelName + nbEvent + " totalT: " + nbFrameToDisplayInSecond(total);
- g2.drawString(string, 0, currentY + 12);
-
- currentY += stepY;
-
- imageComponent.stringList.add(string);
-
- g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
- }
-
- System.out.println("Custom XML user label loaded.");
-
- return currentY;
- }
-
- /**
- * This function ensure that all the events are loaded the same way for all animals,
- * and even resort them, in order to have the exact same list (and same order) of event for all animals
- *
- * @param userEvent
- */
- private void synchronizeAllAnimalEvent(EventTimeLine userEvent)
- {
-
- // TODO
-
- ArrayList<Animal> animalList = new ArrayList<Animal>();
- for (VideoLabelPanel videoLabelPanel : videoLabelPanelArrayList)
- {
- animalList.add(videoLabelPanel.animal);
- }
-
- }
-
- float getMin(float a, float b)
- {
- if (a < b)
- return a;
- return b;
- }
-
- public void loadXML(File currentFile)
- {
-
- System.out.println("Loading document");
-
- // LOAD DOCUMENT
-
- mouseARecord.clear();
- mouseBRecord.clear();
-
- File XMLFile = currentFile;
- if (!XMLFile.exists())
- return;
-
- Document XMLDocument = XMLUtil.loadDocument(XMLFile);
-
- XPath xpath = XPathFactory.newInstance().newXPath();
-
- // VIDEO FILE NAME LOAD
-
- {
- String expression = "//FILENAME";
- NodeList nodes;
- try
- {
- nodes = (NodeList) xpath.evaluate(expression, XMLDocument, XPathConstants.NODESET);
-
- // System.out.println( "node size : " + nodes.getLength() );
-
- Element fileNode = (Element) nodes.item(0);
- System.out.println("Video file is :" + fileNode.getTextContent());
- videoFile = new File(fileNode.getTextContent());
-
- }
- catch (XPathExpressionException e)
- {
-
- e.printStackTrace();
- }
- }
-
- // MOUSE A LOAD
-
- // float startFrame = Float.parseFloat( loadFrameStartTextField.getText() );
- // float endFrame = Float.parseFloat( loadFrameEndTextField.getText() );
-
- float startFrame = 0;
- float endFrame = Float.MAX_VALUE;
-
- {
-
- String expression = "//MOUSEA/DET";
- NodeList nodes;
- try
- {
- nodes = (NodeList) xpath.evaluate(expression, XMLDocument, XPathConstants.NODESET);
-
- // System.out.println( "mouse A node size : " + nodes.getLength() );
-
- for (int i = 0; i < nodes.getLength(); i++)
- {
- Element detNode = (Element) nodes.item(i);
-
- MouseInfoRecord mouseInfoRecord = new MouseInfoRecord();
- mouseInfoRecord.bodyPosition = new Point2D.Float(
- Float.parseFloat(detNode.getAttribute("bodyx")),
- Float.parseFloat(detNode.getAttribute("bodyy")));
- mouseInfoRecord.headPosition = new Point2D.Float(
- Float.parseFloat(detNode.getAttribute("headx")),
- Float.parseFloat(detNode.getAttribute("heady")));
- mouseInfoRecord.tailPosition = new Point2D.Float(
- Float.parseFloat(detNode.getAttribute("tailx")),
- Float.parseFloat(detNode.getAttribute("taily")));
-
- int currentT = Integer.parseInt(detNode.getAttribute("t"));
- if (currentT >= startFrame && currentT <= endFrame)
- {
- // System.out.println("Mouse A adding record at t " + currentT );
- mouseARecord.put(currentT, mouseInfoRecord);
- }
-
- }
-
- }
- catch (XPathExpressionException e)
- {
-
- e.printStackTrace();
- }
- }
-
- // MOUSE B LOAD
-
- {
- String expression = "//MOUSEB/DET";
- NodeList nodes;
- try
- {
- nodes = (NodeList) xpath.evaluate(expression, XMLDocument, XPathConstants.NODESET);
-
- // System.out.println( "mouse B node size : " + nodes.getLength() );
-
- for (int i = 0; i < nodes.getLength(); i++)
- {
- Element detNode = (Element) nodes.item(i);
-
- MouseInfoRecord mouseInfoRecord = new MouseInfoRecord();
- mouseInfoRecord.bodyPosition = new Point2D.Float(
- Float.parseFloat(detNode.getAttribute("bodyx")),
- Float.parseFloat(detNode.getAttribute("bodyy")));
- mouseInfoRecord.headPosition = new Point2D.Float(
- Float.parseFloat(detNode.getAttribute("headx")),
- Float.parseFloat(detNode.getAttribute("heady")));
- mouseInfoRecord.tailPosition = new Point2D.Float(
- Float.parseFloat(detNode.getAttribute("tailx")),
- Float.parseFloat(detNode.getAttribute("taily")));
-
- int currentT = Integer.parseInt(detNode.getAttribute("t"));
- if (currentT >= startFrame && currentT <= endFrame)
- {
-
- // System.out.println("Mouse B adding record at t " + currentT );
-
- mouseBRecord.put(currentT, mouseInfoRecord);
- }
-
- }
-
- }
- catch (XPathExpressionException e)
- {
-
- e.printStackTrace();
- }
- }
-
- startOffset = trimAnalysisRecord();
-
- }
-
- /** Time in frame before the first analysis. Used to offset the video sequence. **/
- int startOffset = 0;
-
- double only2digit(double val)
- {
- val *= 100;
- val = Math.floor(val);
- val /= 100f;
- return val;
- }
-
- void computeVisionGraph(VisionGraph visionGraph)
- {
- // --------------------------------
- // A regarde l'autre souris ( non event / graph de vue )
- {
-
- float nbVal = 0;
- float totalDistance = 0;
- float nbEvent = 0;
- float total = 0;
-
- int tabAngle[] = new int[361];
- int graphNumber = 0;
-
- int binSize = 5;
-
- EventCriteria currentCriteria = null;
-
- int tMin = Integer.MAX_VALUE;
- int tMax = 0;
- {
- Iterator<Integer> integerIterator = mouseARecord.keySet().iterator();
- while (integerIterator.hasNext())
- {
- int val = integerIterator.next();
- if (val > tMax)
- tMax = val;
- if (val < tMin)
- tMin = val;
- }
- }
-
- for (int t = 0; t < tMax; t++)
- {
- if (mouseARecord.containsKey(t))
- if (mouseBRecord.containsKey(t))
- {
- MouseInfoRecord mouseA = mouseARecord.get(t);
- MouseInfoRecord mouseB = mouseBRecord.get(t);
-
- double distanceHeadABodyB = mouseA.headPosition.distanceSq(mouseB.bodyPosition);
- double distanceHeadAHeadB = mouseA.headPosition.distanceSq(mouseB.headPosition);
- double distanceBodyABodyB = mouseA.bodyPosition.distanceSq(mouseB.bodyPosition);
- double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq(mouseB.headPosition);
-
- double VAx = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
- double VAy = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
- double angleA = Math.atan2(VAy, VAx);
-
- // teste A dans la vue.
-
- double VABx = -mouseA.headPosition.getX() + mouseB.headPosition.getX();
- double VABy = -mouseA.headPosition.getY() + mouseB.headPosition.getY();
- double angleBA = Math.atan2(VABy, VABx); // + Math.PI;
-
- boolean eventIsOk = true;
-
- if (angleMin(angleBA, angleA) < demiVisionDeSouris)
- {
-
- }
- else
- {
- eventIsOk = false;
- }
-
- if (visionGraph == VisionGraph.AT_FOLLOW_STATE)
- {
- // CRITERE EN POURSUITE
- if (
-
- (mouseA.distanceIsInferiorToThreshold2) || (!mouseA.isGettingToOtherAndTouch))
- {
- eventIsOk = false;
- }
- }
-
- if (visionGraph == VisionGraph.AT_STOP_STATE)
- {
- if (
- // CRITERE EN OBSERVATION A L ARRET
-
- (mouseA.distanceIsInferiorToThreshold1) || (mouseA.speed > SPEED_THRESHOLD_1))
-
- {
- eventIsOk = false;
- }
- }
-
- if (eventIsOk)
- {
-
- double angleSouris = angleA;
- double angleVision = angleBA;
-
- angleVision = angleVision - angleSouris;
-
- int angleVisionDeg = (int) (180d * angleVision / Math.PI);
-
- while (angleVisionDeg > 180)
- angleVisionDeg -= 360;
- while (angleVisionDeg < -180)
- angleVisionDeg += 360;
-
- int angleToFill = binSize * ((int) angleVisionDeg / binSize);
-
- tabAngle[180 + angleToFill]++;
-
- }
-
- }
- }
-
- // Graph de placement de I dans la vue de R.
- {
-
- XlsManager xls = null;
- File xlsFile = new File(System.getProperty("user.home") + "\\" + visionGraph.toString() + " "
- + animal.animalName + ".xls");
- try
- {
- xls = new XlsManager(xlsFile);
- }
- catch (IOException e)
- {
-
- e.printStackTrace();
- }
-
- xls.createNewPage("result");
-
- // Generation du graph de vue de la residente.
-
- JFreeChart chart;
- XYSeriesCollection xyDataset = new XYSeriesCollection();
- YIntervalSeriesCollection yintervalseriescollection = new YIntervalSeriesCollection();
- IcyFrame graphFrame = new IcyFrame("graph " + graphNumber + " " + animal.animalName, true, true,
- true, true);
- graphNumber++;
-
- chart = ChartFactory.createXYLineChart("", "angle", "y", xyDataset, PlotOrientation.VERTICAL, true,
- false, false);
-
- XYSeries seriesXY = new XYSeries("Sight " + animal.animalName);
- xyDataset.addSeries(seriesXY);
-
- int cursorX = 0;
-
- for (int i = 0; i < 360; i += binSize)
- {
- seriesXY.add(i - 180, tabAngle[i]);
- xls.setNumber(cursorX, 0, tabAngle[i]);
- cursorX++;
- }
-
- new AnnounceFrame("Exported in file " + xlsFile);
- xls.SaveAndClose();
-
- graphFrame.getContentPane().add(
- new ChartPanel(chart, 500, 200, 500, 200, 500, 500, false, false, true, true, true, true));
- graphFrame.setVisible(true);
- graphFrame.pack();
- graphFrame.addToMainDesktopPane();
- graphFrame.center();
-
- }
-
- }
- }
-
- @Override
- public void actionPerformed(ActionEvent e)
- {
-
- if (e.getSource() == computeVisionInFollowButton)
- {
- computeVisionGraph(VisionGraph.AT_FOLLOW_STATE);
- }
- if (e.getSource() == computeVisionWhenStoppedButton)
- {
- computeVisionGraph(VisionGraph.AT_STOP_STATE);
- }
-
- if (e.getSource() == exportSpeedButton)
- {
- // export speed computation
-
- File xlsFile = new File(file.getAbsolutePath() + ".speed.xls");
-
- try
- {
- XlsManager xls = new XlsManager(xlsFile);
- // xls.createNewPage("Results");
-
- exportSpeed(xls, mouseARecord, "Mouse A");
- exportSpeed(xls, mouseBRecord, "Mouse B");
-
- xls.SaveAndClose();
-
- }
- catch (IOException e1)
- {
- e1.printStackTrace();
- }
-
- new AnnounceFrame("Speed data have been exported to " + xlsFile.getAbsolutePath(), 5);
-
- }
-
- if (e.getSource() == computeLocationHeatMapButton)
- {
- computeLocationHeatMap();
- // computeEventLocationHeatMap();
- }
-
- if (e.getSource() == computeUSVStat)
- {
- // computeVocStats();
- computeUSVStats();
- }
-
- if (e.getSource() == exportEventsAsXML)
- {
- exportEventsAsXML();
- }
-
- if (e.getSource() == saveImageButton)
- {
- // save a full strip of the image
- try
- {
- ImageIO.write(imageChrono, "png", new File(file.getAbsolutePath() + ".1.png"));
- }
- catch (IOException e1)
- {
- e1.printStackTrace();
- }
-
- // save criteria by criteria
-
- int numeroCriteria = 0;
- for (int y = 0; y < imageChrono.getHeight(); y += stepY)
- {
-
- BufferedImage image2 = new BufferedImage(imageChrono.getWidth(), stepY, BufferedImage.TYPE_INT_BGR);
-
- Graphics2D targetG = (Graphics2D) image2.getGraphics();
-
- targetG.drawImage(imageChrono, null, 0, -y);
-
- try
- {
- ImageIO.write(image2, "png",
- new File(file.getAbsolutePath() + ".criteria_" + numeroCriteria + ".png"));
- }
- catch (IOException e1)
- {
- e1.printStackTrace();
- }
- numeroCriteria++;
-
- }
-
- // save the strip with multiple lines.
-
- float desiredWidth = 1600 * 2;
-
- BufferedImage image2 = new BufferedImage((int) desiredWidth,
- (int) (imageChrono.getHeight() * imageChrono.getWidth() / desiredWidth),
- BufferedImage.TYPE_INT_BGR);
-
- Graphics2D sourceG = (Graphics2D) imageChrono.getGraphics();
- Graphics2D targetG = (Graphics2D) image2.getGraphics();
-
- int stepY = 0;
- for (int offset = 0; offset < imageChrono.getWidth(); offset += desiredWidth)
- {
- targetG.drawImage(imageChrono, null, -offset, stepY * imageChrono.getHeight());
- stepY++;
- }
-
- try
- {
- ImageIO.write(image2, "png", new File(file.getAbsolutePath() + ".2.png"));
- }
- catch (IOException e1)
- {
- e1.printStackTrace();
- }
-
- }
-
- }
-
- private void exportEventsAsXML()
- {
-
- Document document = XMLUtil.createDocument(true);
-
- for (EventTimeLine eventTimeLine : animal.eventTimeLineList)
- {
- Element elementTimeLine = document.createElement("EventTimeLine");
- document.getDocumentElement().appendChild(elementTimeLine);
- XMLUtil.setAttributeIntValue(elementTimeLine, "index", animal.eventTimeLineList.indexOf(eventTimeLine));
- XMLUtil.setAttributeValue(elementTimeLine, "name", eventTimeLine.criteriaName);
- XMLUtil.setAttributeValue(elementTimeLine, "type", eventTimeLine.eventType.toString());
- XMLUtil.setAttributeValue(elementTimeLine, "timeLineCategory",
- eventTimeLine.timeLineCategory.toString());
-
- for (EventCriteria event : eventTimeLine.eventList)
- {
- Element elementEvent = document.createElement("event");
- elementTimeLine.appendChild(elementEvent);
- XMLUtil.setAttributeIntValue(elementEvent, "startFrame", event.startFrame);
- XMLUtil.setAttributeIntValue(elementEvent, "endFrame", event.endFrame);
- }
- }
-
- File xmlFile = new File(file.getAbsolutePath() + ".allEventsExported.xml");
- XMLUtil.saveDocument(document, xmlFile);
- AnnounceFrame f = new AnnounceFrame("File exported: " + xmlFile.getAbsolutePath());
- }
-
- private void computeUSVStats()
- {
-
- // designed for USVs
- // given an event, let's say an USV event, this code provide the following ratio:
- // The number of USV event that are correlated with the events of a specific timeEvent.
- // 100% means all the USV event are overlapping with the candidate event.
- // 50% means half the USV event are ...
-
- WritableWorkbook workbook;
-
- try
- {
-
- workbook = XLSUtil.createWorkbook(new File(file.getAbsolutePath() + ".event.xls"));
- WritableSheet page = XLSUtil.createNewPage(workbook, "result");
-
- int currentColumn = 1;
- for (int indexOfUSVEvent = 29; indexOfUSVEvent < animal.eventTimeLineList.size(); indexOfUSVEvent++)
- {
-
- EventTimeLine eventTimeLineWatched = animal.eventTimeLineList.get(indexOfUSVEvent);
-
- XLSUtil.setCellString(page, 0, 0, file.getAbsolutePath());
- // XLSUtil.setCellString( page, 0, 1, "event watched: " + eventTimeLineWatched.criteriaName );
- // XLSUtil.setCellString( page, 0, 2, "nb event(s): " + eventTimeLineWatched.eventList.size() );
-
- int row = 5;
-
- XLSUtil.setCellString(page, 0, row, "event");
- XLSUtil.setCellString(page, currentColumn, row - 2, "Event: " + eventTimeLineWatched.criteriaName);
- XLSUtil.setCellString(page, currentColumn, row - 1,
- "Nb event: " + eventTimeLineWatched.eventList.size());
-
- XLSUtil.setCellString(page, currentColumn, row, "nb corr event ");
- XLSUtil.setCellString(page, currentColumn + 1, row, "% corr event");
- // 1
- // 1
- // 2
- row += 2;
-
- for (EventTimeLine eventTimeLineCandidate : animal.eventTimeLineList)
- {
- XLSUtil.setCellString(page, 0, row, eventTimeLineCandidate.criteriaName);
-
- int nbEventCandidate = eventTimeLineCandidate.eventList.size();
- // XLSUtil.setCellNumber( page, currentColumn, row, nbEventCandidate );
-
- int nbOccur = 0;
-
- // check how many time the eventUSV occurs at the same time as the candidateEvent
- for (EventCriteria eventUSV : eventTimeLineWatched.eventList)
- {
-
- for (EventCriteria eventCandidate : eventTimeLineCandidate.eventList)
- {
- if (isEventOverlapping(eventUSV, eventCandidate))
- {
- nbOccur++;
- break;
- }
-
- }
-
- }
-
- float ratio = 100f * (float) nbOccur / (float) eventTimeLineWatched.eventList.size();
- XLSUtil.setCellNumber(page, currentColumn, row, nbOccur);
- XLSUtil.setCellNumber(page, currentColumn + 1, row, ratio);
-
- row++;
- }
- currentColumn += 2;
- }
-
- XLSUtil.saveAndClose(workbook);
-
- }
- catch (IOException e)
- {
- e.printStackTrace();
- }
- catch (WriteException e)
- {
- e.printStackTrace();
- }
-
- }
-
- /**
- * check if a is overlapping b.
- */
- private boolean isEventOverlapping(EventCriteria a, EventCriteria b)
- {
-
- if (b.startFrame <= a.endFrame && b.endFrame >= a.startFrame)
- {
- return true;
- }
-
- return false;
- }
-
- /**
- * @deprecated
- * @param vocEventIndex
- * @param candidateEventIndex
- * @param sheet
- */
- private void feedXLSWithIntersectingEvent(int vocEventIndex, int candidateEventIndex, WritableSheet sheet)
- {
-
- /** Number of vocalization intersecting/overlapping with a contact */
-
- EventTimeLine vocTimeLine = animal.eventTimeLineList.get(vocEventIndex);
- EventTimeLine candidateTimeLine = animal.eventTimeLineList.get(candidateEventIndex);
-
- int totalNbVoc = vocTimeLine.eventList.size();
-
- int nbVocWithEvent = getNumberOfEventOverlap(vocTimeLine, candidateTimeLine);
-
- int row = sheet.getRows();
-
- XLSUtil.setCellString(sheet, 0, row, "nb Voc with event :" + candidateTimeLine.criteriaName);
- XLSUtil.setCellNumber(sheet, 1, row, nbVocWithEvent);
- XLSUtil.setCellString(sheet, 2, row, "percent:");
- XLSUtil.setCellNumber(sheet, 3, row++, nbVocWithEvent * 100f / totalNbVoc);
-
- }
-
- /**
- * @deprected
- * provides the number of event vocTimeLine overlapping with the candidate time line
- */
- private int getNumberOfEventOverlap(EventTimeLine vocTimeLine, EventTimeLine candidateTimeLine)
- {
-
- int nbEvent = 0;
-
- System.out.println("nb of event of type ** " + vocTimeLine.criteriaName + " ** matching ** "
- + candidateTimeLine.criteriaName + " **");
-
- for (EventCriteria vocEvent : vocTimeLine.eventList)
- {
- for (EventCriteria candidateEvent : animal.eventTimeLineList.get(1).eventList)
- {
- if (isEventOverlapping(vocEvent, candidateEvent))
- {
- nbEvent++;
- break;
- }
- }
-
- }
-
- return nbEvent;
- }
-
- private void computeEventLocationHeatMap()
- {
- // red channel : contact events
- // green channel : usv events
-
- // check if event is found
-
- // System.out.println( animal.eventTimeLineList.get( 29 ).criteriaName );
-
- // create image
-
- // should parse the all data to find min/max or check video input size.
-
- SCALE = Float.parseFloat(scaleTextField.getText());
-
- IcyBufferedImage image = new IcyBufferedImage(800, 600, 3, DataType.USHORT);
-
- // check < threshold 1 events
- for (EventCriteria event : animal.eventTimeLineList.get(0).eventList)
- {
- for (int t = event.startFrame; t <= event.endFrame; t++)
- {
- MouseInfoRecord mouseA = mouseARecord.get(t);
- additiveDrawMouse(mouseA, image, 0);
-
- MouseInfoRecord mouseB = mouseBRecord.get(t);
- additiveDrawMouse(mouseB, image, 0);
- }
- }
-
- // check USV
- for (EventCriteria event : animal.eventTimeLineList.get(29).eventList)
- {
- for (int t = event.startFrame; t <= event.endFrame; t++)
- {
- MouseInfoRecord mouseA = mouseARecord.get(t);
- additiveDrawMouse(mouseA, image, 1);
-
- MouseInfoRecord mouseB = mouseBRecord.get(t);
- additiveDrawMouse(mouseB, image, 1);
- }
- }
-
- image.dataChanged();
-
- // display image
-
- Sequence outPutSequence = new Sequence(image);
- // Icy.getMainInterface().addSequence( outPutSequence );
-
- // save Image
-
- File heatMapFile = new File(FileUtil.setExtension(file.getAbsolutePath(), ".heatmap.event.tif"));
- Saver.save(outPutSequence, heatMapFile);
- new AnnounceFrame("HeatMapFile saved to " + heatMapFile.getAbsolutePath(), 5);
-
- }
-
- private void computeLocationHeatMap()
- {
-
- // create image
-
- // should parse the all data to find min/max or check video input size.
-
- SCALE = Float.parseFloat(scaleTextField.getText());
-
- IcyBufferedImage image = new IcyBufferedImage(800, 600, 4, DataType.USHORT);
-
- // render mice
-
- // mouse A
- for (Integer t : mouseARecord.keySet())
- {
- MouseInfoRecord mouseA = mouseARecord.get(t);
- additiveDrawMouse(mouseA, image, 0);
- }
-
- // mouse B
- for (Integer t : mouseBRecord.keySet())
- {
- MouseInfoRecord mouseB = mouseBRecord.get(t);
- additiveDrawMouse(mouseB, image, 1);
- }
-
- // voc event on blue channel. (test purposes)
- for (Integer t : mouseBRecord.keySet())
- {
- MouseInfoRecord mouseB = mouseBRecord.get(t);
- MouseInfoRecord mouseA = mouseARecord.get(t);
-
- EventTimeLine eventTimeLineWatched = animal.eventTimeLineList.get(29);
- if (eventTimeLineWatched.getNbEvent(t, t) == 1)
- {
- additiveDrawMouse(mouseA, image, 2);
- additiveDrawMouse(mouseB, image, 3);
- }
- }
-
- image.dataChanged();
-
- // display image
-
- Sequence outPutSequence = new Sequence(image);
- // Icy.getMainInterface().addSequence( outPutSequence );
-
- // save Image
-
- File heatMapFile = new File(FileUtil.setExtension(file.getAbsolutePath(), ".heatmap.tif"));
- Saver.save(outPutSequence, heatMapFile);
- new AnnounceFrame("HeatMapFile saved to " + heatMapFile.getAbsolutePath(), 5);
-
- }
-
- private void additiveDrawMouse(MouseInfoRecord mouse, IcyBufferedImage image, int channel)
- {
-
- Ellipse2D head = new Ellipse2D.Float((float) mouse.headPosition.getX() - (40f * SCALE) / 2f,
- (float) mouse.headPosition.getY() - (40f * SCALE) / 2f, 40 * SCALE, 40 * SCALE); // 9
- Ellipse2D body = new Ellipse2D.Float((float) mouse.bodyPosition.getX() - (77f * SCALE) / 2f,
- (float) mouse.bodyPosition.getY() - (77f * SCALE) / 2f, 77 * SCALE, 77 * SCALE); // 17
- Ellipse2D tail = new Ellipse2D.Float((float) mouse.tailPosition.getX() - (13f * SCALE) / 2f,
- (float) mouse.tailPosition.getY() - (13f * SCALE) / 2f, 13 * SCALE, 13 * SCALE); // 3
-
- int centerX = 0;
- int centerY = 0;
- int ray = 30;
- additiveDrawOverImage(image, (int) head.getCenterX(), (int) head.getCenterY(), (int) ((40f * SCALE) / 2f),
- channel);
- additiveDrawOverImage(image, (int) body.getCenterX(), (int) body.getCenterY(), (int) ((77f * SCALE) / 2f),
- channel);
- additiveDrawOverImage(image, (int) tail.getCenterX(), (int) tail.getCenterY(), (int) ((13f * SCALE) / 2f),
- channel);
-
- }
-
- private void additiveDrawOverImage(IcyBufferedImage image, int ox, int oy, int r, int channel)
- {
-
- short[] buffer = image.getDataXYAsShort(channel);
- int width = image.getWidth();
-
- for (int x = -r; x < r; x++)
- {
- int height = (int) Math.sqrt(r * r - x * x);
-
- for (int y = -height; y < height; y++)
- {
- // bmp.SetPixel(x + ox, y + oy, Color.Red);
- buffer[(oy + y) * width + x + ox]++;
- }
- }
-
- }
-
- private void exportSpeed(XlsManager xls, HashMap<Integer, MouseInfoRecord> mouseRecord, String name)
- {
-
- xls.createNewPage(name);
-
- int tMin = 0;
-
- START_MINUTE = Integer.parseInt(computeImageStartMinuteTextField.getText());
- NB_MINUTE = Integer.parseInt(computeImageNbMinuteTextField.getText());
- firstFrame = (int) (tMin + START_MINUTE * 60 * FPS);
- lastFrame = (int) (firstFrame + NB_MINUTE * 60 * FPS);
-
- int tMax = lastFrame;
- /** frameWindow est utilisé pour lisser le calcul de deplacement entre deux points de temps. t-framewindow et t+frameWindow */
- int frameWindow = 6; // 5
-
- double speedFrame[] = new double[tMax - firstFrame]; // speed computed at each frame
-
- xls.setLabel(0, 0, "frame#");
- xls.setLabel(1, 0, "speed in px/frame time");
- xls.setLabel(2, 0, "cumulated distance in px");
-
- {
- float nbVal = 0;
- double totalDistance = 0;
- for (int t = 0; t < tMax; t++)
- {
- if (mouseRecord.containsKey(t - frameWindow))
- if (mouseRecord.containsKey(t + frameWindow))
- if (mouseRecord.containsKey(t))
- {
- MouseInfoRecord mouseRecordPrev = mouseRecord.get(t - frameWindow);
- MouseInfoRecord mouseRecordNext = mouseRecord.get(t + frameWindow);
- MouseInfoRecord mouseRecordCurrentFrame = mouseRecord.get(t);
-
- float distance = (float) mouseRecordPrev.bodyPosition
- .distance(mouseRecordNext.bodyPosition);
- distance /= (float) (frameWindow * 2 + 1); // pour obtenir une vitesse par frame.
-
- totalDistance += distance;
-
- mouseRecordCurrentFrame.speed = distance;
-
- speedFrame[t - firstFrame] = distance;
- xls.setNumber(0, (int) (nbVal + 1), nbVal);
- xls.setNumber(1, (int) (nbVal + 1), distance);
- xls.setNumber(2, (int) (nbVal + 1), totalDistance);
-
- nbVal++;
- }
- }
-
- }
-
- xls.setLabel(4, 0, "second#");
- xls.setLabel(5, 0, "speed in px/s");
- xls.setLabel(6, 0, "cumulated distance in px");
-
- // System.out.println("tMax : " + tMax );
- {
- int sec = 0;
- int arrayCounter = 0;
- double totalDistance = 0;
- while (arrayCounter < tMax - FPS)
- {
-
- double speedSec = 0;
-
- for (int i = 0; i < FPS; i++)
- {
- speedSec += speedFrame[arrayCounter];
- totalDistance += speedFrame[arrayCounter];
- arrayCounter++;
- }
-
- // speedSec;
-
- System.out.println("sec:" + sec);
-
- xls.setNumber(4, sec + 1, sec);
- xls.setNumber(5, sec + 1, speedSec);
- xls.setNumber(6, sec + 1, totalDistance);
-
- sec++;
- }
-
- }
- }
-
- @Override
- public void mouseClicked(MouseEvent e)
- {
- try
- {
- updateVideoImageAt(e.getX());
- }
- catch (InterruptedException ex)
- {
- // ignore
- }
- }
-
- @Override
- public void mouseEntered(MouseEvent e)
- {
- }
-
- @Override
- public void mouseExited(MouseEvent e)
- {
- }
-
- @Override
- public void mousePressed(MouseEvent e)
- {
- }
-
- @Override
- public void mouseReleased(MouseEvent e)
- {
- }
-
- @Override
- public void mouseDragged(MouseEvent e)
- {
- try
- {
- updateVideoImageAt(e.getX());
- }
- catch (InterruptedException ex)
- {
- // ignore
- ex.printStackTrace();
- }
- }
-
- private void updateVideoImageAt(int x) throws InterruptedException
- {
-
- x = x + firstFrame;
- // x = x+ startOffset;
-
- if (frameAccess == null)
- {
- // check if file exists.
- if (videoFile.exists())
- {
- frameAccess = new FrameAccess(videoFile);
- }
- else
- {
- System.out.println("File specified in XML is not present. Checking in XML folder.");
- videoFile = new File(FileUtil.getDirectory(file.getAbsolutePath()) + FileUtil.separator
- + FileUtil.getFileName(videoFile.getName()));
- frameAccess = new FrameAccess(videoFile);
- }
-
- }
-
- videoImage = frameAccess.getImageAt(x + startOffset + 3);
-
- if (videoImage == null)
- {
- videoImage = IcyBufferedImageUtil.toBufferedImage(new IcyBufferedImage(640, 480, 1, DataType.BYTE),
- null);
-
- }
-
- // draw over.
-
- Graphics2D g2 = (Graphics2D) videoImage.getGraphics();
-
- // Mouse A
- {
- g2.setColor(Color.red);
- MouseInfoRecord mouseA = mouseARecord.get(x);
- MouseInfoRecord mouseB = mouseBRecord.get(x);
- if (mouseA != null)
- {
- SCALE = Float.parseFloat(scaleTextField.getText());
- // Ellipse2D head = new Ellipse2D.Float( (float)mouseA.headPosition.getX()-4f , (float)mouseA.headPosition.getY() - (40f*SCALE)/2f ,
- // 40*SCALE , 40*SCALE ); //9
- // Ellipse2D body = new Ellipse2D.Float( (float)mouseA.bodyPosition.getX()-8f , (float)mouseA.bodyPosition.getY() - (77f*SCALE)/2f ,
- // 77*SCALE , 77*SCALE ); // 17
- // Ellipse2D tail = new Ellipse2D.Float( (float)mouseA.tailPosition.getX()-1f , (float)mouseA.tailPosition.getY() - (13f*SCALE)/2f ,
- // 13*SCALE , 13*SCALE ); // 3
- // System.out.println(SCALE);
- Ellipse2D head = new Ellipse2D.Float((float) mouseA.headPosition.getX() - (40f * SCALE) / 2f,
- (float) mouseA.headPosition.getY() - (40f * SCALE) / 2f, 40 * SCALE, 40 * SCALE); // 9
- Ellipse2D body = new Ellipse2D.Float((float) mouseA.bodyPosition.getX() - (77f * SCALE) / 2f,
- (float) mouseA.bodyPosition.getY() - (77f * SCALE) / 2f, 77 * SCALE, 77 * SCALE); // 17
- Ellipse2D tail = new Ellipse2D.Float((float) mouseA.tailPosition.getX() - (13f * SCALE) / 2f,
- (float) mouseA.tailPosition.getY() - (13f * SCALE) / 2f, 13 * SCALE, 13 * SCALE); // 3
-
- g2.draw(head);
- g2.draw(body);
- g2.draw(tail);
-
- // draw eye view
-
- double VAx = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
- double VAy = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
- double angleA = Math.atan2(VAy, VAx);
-
- double departAngle1 = -8d * Math.PI / 9d;
- double departAngle2 = 3d * Math.PI / 9d;
-
- // centre
- g2.drawLine((int) mouseA.headPosition.getX(), (int) mouseA.headPosition.getY(),
- (int) (mouseA.headPosition.getX() + Math.cos(angleA) * 100d),
- (int) (mouseA.headPosition.getY() + Math.sin(angleA) * 100d));
-
- // gauche
- g2.drawLine((int) mouseA.headPosition.getX(), (int) mouseA.headPosition.getY(),
- (int) (mouseA.headPosition.getX() + Math.cos(angleA - 1 * Math.PI / 3d) * 50d),
- (int) (mouseA.headPosition.getY() + Math.sin(angleA - 1 * Math.PI / 3d) * 50d));
-
- // gauche full
- g2.drawLine((int) mouseA.headPosition.getX(), (int) mouseA.headPosition.getY(),
- (int) (mouseA.headPosition.getX() + Math.cos(angleA - 1 * 2 * Math.PI / 3d) * 100d),
- (int) (mouseA.headPosition.getY() + Math.sin(angleA - 1 * 2 * Math.PI / 3d) * 100d));
-
- // droit
- g2.drawLine((int) mouseA.headPosition.getX(), (int) mouseA.headPosition.getY(),
- (int) (mouseA.headPosition.getX() + Math.cos(angleA + 1 * Math.PI / 3d) * 50d),
- (int) (mouseA.headPosition.getY() + Math.sin(angleA + 1 * Math.PI / 3d) * 50d));
-
- // droit full
- g2.drawLine((int) mouseA.headPosition.getX(), (int) mouseA.headPosition.getY(),
- (int) (mouseA.headPosition.getX() + Math.cos(angleA + 1 * 2 * Math.PI / 3d) * 100d),
- (int) (mouseA.headPosition.getY() + Math.sin(angleA + 1 * 2 * Math.PI / 3d) * 100d));
-
- // ------------------------ MOUSE A REGARDE B
-
- // teste A dans la vue.
-
- double VABx = -mouseA.headPosition.getX() + mouseB.headPosition.getX();
- double VABy = -mouseA.headPosition.getY() + mouseB.headPosition.getY();
- double angleBA = Math.atan2(VABy, VABx); // + Math.PI;
-
- boolean eventIsOk = true;
-
- if (angleMin(angleBA, angleA) < demiVisionDeSouris)
- {
-
- }
- else
- {
- eventIsOk = false;
- }
-
- if (mouseA.distanceIsInferiorToThreshold2)
- {
- eventIsOk = false;
- }
-
- g2.setColor(Color.black);
- g2.drawLine((int) mouseA.headPosition.getX(), (int) mouseA.headPosition.getY(),
- (int) (mouseA.headPosition.getX() + Math.cos(angleBA) * 100d),
- (int) (mouseA.headPosition.getY() + Math.sin(angleBA) * 100d));
-
- double angleDif = angleBA - angleA;
-
- int angleDifDegree = (int) (180d * angleDif / Math.PI);
-
- while (angleDifDegree > 180)
- angleDifDegree -= 360;
- while (angleDifDegree < -180)
- angleDifDegree += 360;
-
- }
- }
- // MOUSE B
- {
- g2.setColor(Color.green);
- MouseInfoRecord mouseB = mouseBRecord.get(x);
- if (mouseB != null)
- {
- // Ellipse2D head = new Ellipse2D.Float( (float)mouseB.headPosition.getX()-4f , (float)mouseB.headPosition.getY() - 4f , 9 , 9 );
- // Ellipse2D body = new Ellipse2D.Float( (float)mouseB.bodyPosition.getX()-8f , (float)mouseB.bodyPosition.getY() - 8f , 17 , 17 );
- // Ellipse2D tail = new Ellipse2D.Float( (float)mouseB.tailPosition.getX()-1f , (float)mouseB.tailPosition.getY() - 1f , 3 , 3 );
-
- Ellipse2D head = new Ellipse2D.Float((float) mouseB.headPosition.getX() - (40f * SCALE) / 2f,
- (float) mouseB.headPosition.getY() - (40f * SCALE) / 2f, 40 * SCALE, 40 * SCALE); // 9
- Ellipse2D body = new Ellipse2D.Float((float) mouseB.bodyPosition.getX() - (77f * SCALE) / 2f,
- (float) mouseB.bodyPosition.getY() - (77f * SCALE) / 2f, 77 * SCALE, 77 * SCALE); // 17
- Ellipse2D tail = new Ellipse2D.Float((float) mouseB.tailPosition.getX() - (13f * SCALE) / 2f,
- (float) mouseB.tailPosition.getY() - (13f * SCALE) / 2f, 13 * SCALE, 13 * SCALE); // 3
-
- g2.draw(head);
- g2.draw(body);
- g2.draw(tail);
-
- // draw eye view
-
- double VAx = mouseB.headPosition.getX() - mouseB.bodyPosition.getX();
- double VAy = mouseB.headPosition.getY() - mouseB.bodyPosition.getY();
- double angleA = Math.atan2(VAy, VAx);
-
- double departAngle1 = -8d * Math.PI / 9d;
- double departAngle2 = 3d * Math.PI / 9d;
-
- // centre
- g2.drawLine((int) mouseB.headPosition.getX(), (int) mouseB.headPosition.getY(),
- (int) (mouseB.headPosition.getX() + Math.cos(angleA) * 100d),
- (int) (mouseB.headPosition.getY() + Math.sin(angleA) * 100d));
-
- // gauche
- g2.drawLine((int) mouseB.headPosition.getX(), (int) mouseB.headPosition.getY(),
- (int) (mouseB.headPosition.getX() + Math.cos(angleA - 1 * Math.PI / 3d) * 50d),
- (int) (mouseB.headPosition.getY() + Math.sin(angleA - 1 * Math.PI / 3d) * 50d));
-
- // gauche full
- g2.drawLine((int) mouseB.headPosition.getX(), (int) mouseB.headPosition.getY(),
- (int) (mouseB.headPosition.getX() + Math.cos(angleA - 2 * Math.PI / 3d) * 100d),
- (int) (mouseB.headPosition.getY() + Math.sin(angleA - 2 * Math.PI / 3d) * 100d));
-
- // droit
- g2.drawLine((int) mouseB.headPosition.getX(), (int) mouseB.headPosition.getY(),
- (int) (mouseB.headPosition.getX() + Math.cos(angleA + 1 * Math.PI / 3d) * 50d),
- (int) (mouseB.headPosition.getY() + Math.sin(angleA + 1 * Math.PI / 3d) * 50d));
-
- // droit full
- g2.drawLine((int) mouseB.headPosition.getX(), (int) mouseB.headPosition.getY(),
- (int) (mouseB.headPosition.getX() + Math.cos(angleA + 1 * 2 * Math.PI / 3d) * 100d),
- (int) (mouseB.headPosition.getY() + Math.sin(angleA + 1 * 2 * Math.PI / 3d) * 100d));
-
- }
- }
-
- videoTimeLabel.setText("frame #" + x +
-
- " " + (int) (x / (FPS * 60)) + ":" + decimalFormat.format((int) (x / FPS % 60)));
-
- imageVideoComponent.setImage(videoImage);
-
- // ComponentUtil.setFixedWidth( imageVideoComponent , 400 );
-
- // getImage
-
- imageVideoComponent.updateUI();
-
- }
-
- public double angleMin(double a1, double a2)
- {
- double angleMin = Double.MAX_VALUE;
-
- a1 = angleToZeroTwoPi(a1);
- a2 = angleToZeroTwoPi(a2);
-
- for (int i = -2; i < 3; i++)
- {
- double dif = Math.abs(a1 + (i * Math.PI * 2d) - a2);
- if (dif < angleMin)
- angleMin = dif;
- }
-
- return angleMin;
- }
-
- public double angleToZeroTwoPi(double a)
- {
-
- while (a < 0)
- {
- a += 2 * Math.PI;
- }
- while (a > 2 * Math.PI)
- {
- a -= 2 * Math.PI;
- }
- return a;
- }
-
- @Override
- public void mouseMoved(MouseEvent arg0)
- {
-
- }
-
- }
-
- @Override
- public void keyPressed(KeyEvent arg0)
- {
- // TODO Auto-generated method stub
-
- }
-
- @Override
- public void keyReleased(KeyEvent e)
- {
-
- if (e.getSource() == scaleTextField)
- {
- try
- {
- float scale = Float.parseFloat(scaleTextField.getText());
- float ratio = scale / 0.22f;
-
- distance1TextField.setText("" + ratio * 22);
- distance2TextField.setText("" + ratio * 40);
- distanceHeadHeadTextField.setText("" + ratio * 15);
- distanceHeadGenitalTextField.setText("" + ratio * 15);
- seuilSideTextField.setText("" + ratio * 12);
- speed_threshold1TextField.setText("" + ratio * 0.5);
- speed_threshold2TextField.setText("" + ratio * 2);
- speed_threshold3TextField.setText("" + ratio * 4);
- }
- catch (NumberFormatException e1)
- {
-
- }
- }
-
- }
-
- @Override
- public void keyTyped(KeyEvent e)
+ public MiceProfilerVideoLabelMaker()
{
+ super();
+ implementer = new MiceProfilerVideoLabelMakerInternal();
}
@Override
- public String getMainPluginClassName()
+ public void run()
{
- return MiceProfilerTracker.class.getName();
+ implementer.run();
}
-}
+}
\ No newline at end of file
diff --git a/src/main/java/plugins/fab/MiceProfiler/MiceProfilerVideoLabelMakerInternal.java b/src/main/java/plugins/fab/MiceProfiler/MiceProfilerVideoLabelMakerInternal.java
new file mode 100644
index 0000000000000000000000000000000000000000..e76bb03aa2526e5e1c4e7e0a5aede6f9d5e74a4c
--- /dev/null
+++ b/src/main/java/plugins/fab/MiceProfiler/MiceProfilerVideoLabelMakerInternal.java
@@ -0,0 +1,5388 @@
+/*
+ * Copyright 2011, 2012 Institut Pasteur.
+ *
+ * This file is part of MiceProfiler.
+ *
+ * MiceProfiler is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * MiceProfiler is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with MiceProfiler. If not, see <http://www.gnu.org/licenses/>.
+ */
+package plugins.fab.MiceProfiler;
+
+import java.awt.BasicStroke;
+import java.awt.BorderLayout;
+import java.awt.Color;
+import java.awt.Dimension;
+import java.awt.Font;
+import java.awt.Graphics;
+import java.awt.Graphics2D;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.awt.event.KeyEvent;
+import java.awt.event.KeyListener;
+import java.awt.event.MouseEvent;
+import java.awt.event.MouseListener;
+import java.awt.event.MouseMotionListener;
+import java.awt.geom.Ellipse2D;
+import java.awt.geom.Point2D;
+import java.awt.image.BufferedImage;
+import java.io.File;
+import java.io.FileNotFoundException;
+import java.io.IOException;
+import java.lang.reflect.Field;
+import java.text.DecimalFormat;
+import java.util.ArrayList;
+import java.util.Collections;
+import java.util.HashMap;
+import java.util.Iterator;
+import java.util.Scanner;
+import java.util.prefs.Preferences;
+
+import javax.imageio.ImageIO;
+import javax.swing.BoxLayout;
+import javax.swing.ImageIcon;
+import javax.swing.JButton;
+import javax.swing.JCheckBox;
+import javax.swing.JFileChooser;
+import javax.swing.JLabel;
+import javax.swing.JMenu;
+import javax.swing.JMenuBar;
+import javax.swing.JMenuItem;
+import javax.swing.JPanel;
+import javax.swing.JScrollPane;
+import javax.swing.JTextField;
+import javax.swing.SwingConstants;
+import javax.xml.xpath.XPath;
+import javax.xml.xpath.XPathConstants;
+import javax.xml.xpath.XPathExpressionException;
+import javax.xml.xpath.XPathFactory;
+
+import org.jfree.chart.ChartFactory;
+import org.jfree.chart.ChartPanel;
+import org.jfree.chart.JFreeChart;
+import org.jfree.chart.plot.PlotOrientation;
+import org.jfree.data.xy.XYSeries;
+import org.jfree.data.xy.XYSeriesCollection;
+import org.jfree.data.xy.YIntervalSeriesCollection;
+import org.w3c.dom.Document;
+import org.w3c.dom.Element;
+import org.w3c.dom.NodeList;
+
+import icy.file.FileUtil;
+import icy.file.Loader;
+import icy.file.Saver;
+import icy.file.xls.XlsManager;
+import icy.gui.dialog.MessageDialog;
+import icy.gui.frame.IcyFrame;
+import icy.gui.frame.progress.AnnounceFrame;
+import icy.gui.frame.progress.ToolTipFrame;
+import icy.gui.util.FontUtil;
+import icy.gui.util.GuiUtil;
+import icy.image.IcyBufferedImage;
+import icy.image.IcyBufferedImageUtil;
+import icy.main.Icy;
+import icy.sequence.Sequence;
+import icy.swimmingPool.SwimmingObject;
+import icy.type.DataType;
+import icy.util.XLSUtil;
+import icy.util.XMLUtil;
+import jxl.Sheet;
+import jxl.Workbook;
+import jxl.read.biff.BiffException;
+import jxl.write.WritableSheet;
+import jxl.write.WritableWorkbook;
+import jxl.write.WriteException;
+
+public class MiceProfilerVideoLabelMakerInternal implements ActionListener, KeyListener
+{
+ JPanel mainPanel = new JPanel();
+ IcyFrame mainFrame = new IcyFrame("Video Label Maker", true, true, true, true);
+ JMenuBar menuBar = new JMenuBar();
+ JMenuItem openFileMenuItem = new JMenuItem("Open XML File...");
+ JMenuItem compileImageFileMenuItem = new JMenuItem("Compile image files from a list of file...");
+ JMenuItem mergeHeatMapMenuItem = new JMenuItem("Stitch heatmap files...");
+
+ JScrollPane scrollPane = new JScrollPane(mainPanel);
+ JPanel setupPanel = GuiUtil.generatePanel("Setup");
+ JLabel legendLabel = new JLabel("Legend", JLabel.CENTER);
+ JTextField scaleTextField = new JTextField("0.22");
+ JTextField scaleVideoTextField = new JTextField("1");
+
+ int START_MINUTE = 0;
+ int NB_MINUTE = 8;
+
+ float SEUIL_DISTANCE_1 = 22;
+ float SEUIL_DISTANCE_2 = 40;
+ float SEUIL_DISTANCE_HEAD_HEAD = 15;
+ float SEUIL_DISTANCE_HEAD_GENITAL = 15;
+ float SEUIL_SIDE = 12;
+ float SPEED_THRESHOLD_1 = (float) 0.5f;
+ float SPEED_THRESHOLD_2 = 2;
+ float SPEED_THRESHOLD_3 = 4;
+ float FPS = 15f;
+ float LOAD_FRAME_START = 0f;
+ float LOAD_FRAME_END = 10000000f;
+ float SCALE = 0.22f;
+
+ JTextField distance1TextField = new JTextField();
+ JTextField distance2TextField = new JTextField();
+ JTextField distanceHeadHeadTextField = new JTextField();
+ JTextField distanceHeadGenitalTextField = new JTextField();
+ JTextField seuilSideTextField = new JTextField();
+ JTextField speed_threshold1TextField = new JTextField();
+ JTextField speed_threshold2TextField = new JTextField();
+ JTextField speed_threshold3TextField = new JTextField();
+ JTextField fpsTextField = new JTextField();
+ // JTextField loadFrameStartTextField = new JTextField();
+ // JTextField loadFrameEndTextField = new JTextField();
+ JTextField computeImageStartMinuteTextField = new JTextField();
+ JTextField computeImageNbMinuteTextField = new JTextField();
+ JButton refreshButton = new JButton("Refresh Data with new parameters");
+
+ BufferedImage videoImage = new BufferedImage(200, 200, BufferedImage.TYPE_INT_BGR);
+ ImageComponent imageVideoComponent = new ImageComponent();
+ JLabel videoTimeLabel = new JLabel("", JLabel.CENTER);
+ int stepY = 15;
+
+ public void run()
+ {
+ mainFrame.pack();
+
+ mainPanel.setLayout(new BoxLayout(mainPanel, BoxLayout.Y_AXIS));
+
+ videoTimeLabel.setFont(new Font("Arial", Font.BOLD, 15));
+ legendLabel.setFont(new Font("Arial", Font.BOLD, 20));
+
+ JMenu fileMenu = new JMenu("File");
+ fileMenu.add(openFileMenuItem);
+ openFileMenuItem.addActionListener(this);
+ fileMenu.addSeparator();
+ fileMenu.add(compileImageFileMenuItem);
+ compileImageFileMenuItem.addActionListener(this);
+ fileMenu.add(mergeHeatMapMenuItem);
+ mergeHeatMapMenuItem.addActionListener(this);
+
+ menuBar.add(fileMenu);
+
+ mainFrame.setJMenuBar(menuBar);
+
+ JPanel sidePanel = new JPanel();
+ sidePanel.setLayout(new BorderLayout());
+ JPanel videoPanel = GuiUtil.generatePanel("video");
+ imageVideoComponent.setImage(videoImage);
+ // ComponentUtil.setFixedWidth( imageVideoComponent , 400 );
+ videoPanel.add(GuiUtil.besidesPanel(imageVideoComponent));
+ videoPanel.add(GuiUtil.besidesPanel(videoTimeLabel));
+
+ sidePanel.add(setupPanel, BorderLayout.NORTH);
+ sidePanel.add(videoPanel, BorderLayout.CENTER);
+
+ mainFrame.getContentPane().setLayout(new BorderLayout());
+ mainFrame.getContentPane().add(sidePanel, BorderLayout.EAST);
+ mainFrame.getContentPane().add(legendLabel, BorderLayout.SOUTH);
+
+ mainFrame.getContentPane().add(scrollPane, BorderLayout.CENTER);
+ scrollPane.setPreferredSize(new Dimension(800, 450));
+
+ distance1TextField.setText("" + SEUIL_DISTANCE_1);
+ distance2TextField.setText("" + SEUIL_DISTANCE_2);
+ distanceHeadHeadTextField.setText("" + SEUIL_DISTANCE_HEAD_HEAD);
+ distanceHeadGenitalTextField.setText("" + SEUIL_DISTANCE_HEAD_GENITAL);
+ seuilSideTextField.setText("" + SEUIL_SIDE);
+ speed_threshold1TextField.setText("" + SPEED_THRESHOLD_1);
+ speed_threshold2TextField.setText("" + SPEED_THRESHOLD_2);
+ speed_threshold3TextField.setText("" + SPEED_THRESHOLD_3);
+ fpsTextField.setText("" + FPS);
+ // loadFrameStartTextField.setText( ""+LOAD_FRAME_START );
+ // loadFrameEndTextField.setText( ""+LOAD_FRAME_END );
+ computeImageStartMinuteTextField.setText("" + START_MINUTE);
+ computeImageNbMinuteTextField.setText("" + NB_MINUTE);
+
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Distance Threshold 1(closest) in px:"), distance1TextField));
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Distance Threshold 2 in px:"), distance2TextField));
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Distance Head-Head in px:"), distanceHeadHeadTextField));
+ setupPanel
+ .add(GuiUtil.besidesPanel(new JLabel("Distance Head-Genital 2 in px:"), distanceHeadGenitalTextField));
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Side detection Parameter in px:"), seuilSideTextField));
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Speed Threshold 1 (black) in px:"), speed_threshold1TextField));
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Speed Threshold 2 (gray) in px:"), speed_threshold2TextField));
+ setupPanel.add(
+ GuiUtil.besidesPanel(new JLabel("Speed Threshold 3 (lightgray) in px:"), speed_threshold3TextField));
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("FPS:"), fpsTextField));
+ // setupPanel.add( GuiUtil.besidesPanel( new JLabel("Load frame start:" ) , loadFrameStartTextField) );
+ // setupPanel.add( GuiUtil.besidesPanel( new JLabel("Load frame end:" ) , loadFrameEndTextField) );
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Computation Start Minute:"), computeImageStartMinuteTextField));
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Computation End Minute:"), computeImageNbMinuteTextField));
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Mouse Scale"), scaleTextField));
+ setupPanel.add(GuiUtil.besidesPanel(new JLabel("Video Image display scale"), scaleVideoTextField));
+
+ setupPanel.add(GuiUtil.besidesPanel(refreshButton));
+ refreshButton.addActionListener(this);
+
+ scaleTextField.setFont(FontUtil.setStyle(scaleTextField.getFont(), Font.BOLD));
+
+ scaleTextField.addKeyListener(this);
+
+ mainFrame.pack();
+ mainFrame.center();
+ mainFrame.addToMainDesktopPane();
+ mainFrame.setVisible(true);
+
+ }
+
+ class MouseInfoRecord
+ {
+ boolean isGettingToOtherAndTouch = false;
+ boolean isEscapingFromOtherAndUnTouch = false;
+ boolean isEscaping = false;
+ boolean distanceIsInferiorToThreshold1 = false;
+ boolean isGoingToTheOther = false;
+ boolean mouseGetToOtherMouseAndEscapeInOut = false;
+ boolean mouseGetToOtherMouseAndOtherEscapeInOut = false;
+ boolean eventA = false;
+ boolean eventB = false;
+ boolean eventC = false;
+ boolean eventD = false;
+ float speed;
+ Point2D headPosition;
+ Point2D tailPosition;
+ Point2D bodyPosition;
+ public boolean distanceIsInferiorToThreshold2 = false;
+ public boolean isBehindTheOther = false;
+ public boolean isBesideTheOther = false;
+ public boolean thisHeadWithOtherGenitalContact = false;
+ }
+
+ public void openFile()
+ {
+ // load last preferences for loader.
+ JFileChooser fileChooser = new JFileChooser();
+ fileChooser.setMultiSelectionEnabled(true);
+ String node = "plugins/PhysicTracker/videolabelmaker/browser";
+
+ Preferences preferences = Preferences.userRoot().node(node);
+ String path = preferences.get("path", "");
+ fileChooser.setCurrentDirectory(new File(path));
+
+ int x = preferences.getInt("x", 0);
+ int y = preferences.getInt("y", 0);
+ int width = preferences.getInt("width", 400);
+ int height = preferences.getInt("height", 400);
+
+ fileChooser.setLocation(x, y);
+ fileChooser.setPreferredSize(new Dimension(width, height));
+
+ int returnValue = fileChooser.showDialog(null, "Load");
+ if (returnValue == JFileChooser.APPROVE_OPTION)
+ {
+ preferences.put("path", fileChooser.getCurrentDirectory().getAbsolutePath());
+ preferences.putInt("x", fileChooser.getX());
+ preferences.putInt("y", fileChooser.getY());
+ preferences.putInt("width", fileChooser.getWidth());
+ preferences.putInt("height", fileChooser.getHeight());
+
+ for (int i = 0; i < fileChooser.getSelectedFiles().length; i++)
+ {
+ if (fileChooser.getSelectedFiles()[i].getName().contains("extra"))
+ {
+ System.out.println(
+ "You are trying to load an extra xml file. Please load the original file instead.");
+ continue;
+ }
+
+ VideoLabelPanel videoLabelPanel = new VideoLabelPanel(fileChooser.getSelectedFiles()[i]);
+ mainPanel.add(videoLabelPanel.panel);
+ videoLabelPanelArrayList.add(videoLabelPanel);
+ mainPanel.add(new JPanel());
+ }
+
+ }
+ mainPanel.updateUI();
+ }
+
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+
+ if (e.getSource() == refreshButton)
+ {
+ try
+ {
+ SEUIL_DISTANCE_1 = Float.parseFloat(distance1TextField.getText());
+ SEUIL_DISTANCE_2 = Float.parseFloat(distance2TextField.getText());
+ SEUIL_DISTANCE_HEAD_HEAD = Float.parseFloat(distanceHeadHeadTextField.getText());
+
+ SEUIL_DISTANCE_HEAD_GENITAL = Float.parseFloat(distanceHeadGenitalTextField.getText());
+ SEUIL_SIDE = Float.parseFloat(seuilSideTextField.getText());
+ SPEED_THRESHOLD_1 = Float.parseFloat(speed_threshold1TextField.getText());
+ SPEED_THRESHOLD_2 = Float.parseFloat(speed_threshold2TextField.getText());
+ SPEED_THRESHOLD_3 = Float.parseFloat(speed_threshold3TextField.getText());
+ FPS = Float.parseFloat(fpsTextField.getText());
+ }
+ catch (NumberFormatException e1)
+ {
+ MessageDialog.showDialog(
+ "One of the parameters cannot be understand as a number. Please correct it and refresh again.",
+ MessageDialog.ERROR_MESSAGE);
+ return;
+ }
+ for (VideoLabelPanel vlp : videoLabelPanelArrayList)
+ {
+ if (!vlp.isFreezed())
+ {
+ vlp.buildResultImage();
+ }
+ }
+
+ double scaleVideo = 1;
+ try
+ {
+ scaleVideo = Double.parseDouble(scaleVideoTextField.getText());
+ }
+ catch (Exception e1)
+ {
+ // the field is incorrect.
+ }
+
+ imageVideoComponent.setZoom(scaleVideo);
+
+ }
+
+ if (e.getSource() == openFileMenuItem)
+ {
+ openFile();
+ }
+
+ if (e.getSource() == compileImageFileMenuItem)
+ {
+ compileImageFile();
+ }
+
+ if (e.getSource() == mergeHeatMapMenuItem)
+ {
+ mergeHeatMapDirectory();
+ }
+
+ }
+
+ private void mergeHeatMapDirectory()
+ {
+
+ JFileChooser fileChooser = new JFileChooser();
+ fileChooser.setMultiSelectionEnabled(true);
+
+ String node = "plugins/PhysicTracker/videolabelmaker/browser";
+
+ Preferences preferences = Preferences.userRoot().node(node);
+ String path = preferences.get("path", "");
+ fileChooser.setCurrentDirectory(new File(path));
+
+ int returnValue = fileChooser.showDialog(null, "Load heatmap files");
+ if (returnValue == JFileChooser.APPROVE_OPTION)
+ {
+ IcyBufferedImage resultImage = new IcyBufferedImage(1, 1, 4, DataType.USHORT);
+
+ for (int i = 0; i < fileChooser.getSelectedFiles().length; i++)
+ {
+ File file = fileChooser.getSelectedFiles()[i];
+ if (file.getAbsolutePath().toLowerCase().endsWith("heatmap.tif"))
+ {
+ java.awt.Point copyPoint = new java.awt.Point(resultImage.getWidth(), 0);
+ System.out.println("Loading file " + file.getAbsolutePath());
+ Sequence sequence = Loader.loadSequence(file.getAbsolutePath(), 0, false);
+
+ // write sequence file name in image.
+ Graphics2D g = (Graphics2D) sequence.getFirstImage().getGraphics();
+ g.setColor(Color.white);
+ g.setFont(new Font("Arial", Font.PLAIN, 12));
+ g.drawString(FileUtil.getFileName(file.getAbsolutePath(), false), 0, 15);
+
+ int newHeight = Math.max(resultImage.getHeight(), sequence.getHeight());
+ resultImage = IcyBufferedImageUtil.scale(resultImage, resultImage.getWidth() + sequence.getWidth(),
+ newHeight, false, SwingConstants.LEFT, SwingConstants.TOP);
+
+ resultImage.copyData(sequence.getFirstImage(), null, copyPoint);
+
+ }
+ }
+
+ // save stitched sequence
+
+ Sequence outputSequence = new Sequence(resultImage);
+ File outFile = new File(FileUtil.getDirectory(fileChooser.getSelectedFile().getAbsolutePath())
+ + FileUtil.separator + "heatmap stitched.tif");
+
+ new AnnounceFrame("Saving stitched heatmap to file " + outFile.getAbsolutePath(), 5);
+ Saver.save(outputSequence, outFile);
+
+ // load files
+ /*
+ * for ( int i = 0 ; i < fileChooser.getSelectedFiles().length ; i++ )
+ * {
+ * try {
+ * BufferedImage bi = ImageIO.read( fileChooser.getSelectedFiles()[i] );
+ * fileImageHashMap.put( fileChooser.getSelectedFiles()[i] , bi );
+ *
+ * } catch (IOException e1) {
+ * e1.printStackTrace();
+ * }
+ *
+ * fileArray.add( fileChooser.getSelectedFiles()[i] );
+ * }
+ */
+ }
+
+ }
+
+ private void compileImageFile()
+ {
+
+ JFileChooser fileChooser = new JFileChooser();
+ fileChooser.setMultiSelectionEnabled(true);
+ int returnValue = fileChooser.showDialog(null, "Load");
+ if (returnValue == JFileChooser.APPROVE_OPTION)
+ {
+
+ ArrayList<File> fileArray = new ArrayList<File>();
+ HashMap<File, BufferedImage> fileImageHashMap = new HashMap<File, BufferedImage>();
+
+ // load files
+
+ for (int i = 0; i < fileChooser.getSelectedFiles().length; i++)
+ {
+ try
+ {
+ BufferedImage bi = ImageIO.read(fileChooser.getSelectedFiles()[i]);
+ fileImageHashMap.put(fileChooser.getSelectedFiles()[i], bi);
+
+ }
+ catch (IOException e1)
+ {
+ e1.printStackTrace();
+ }
+
+ fileArray.add(fileChooser.getSelectedFiles()[i]);
+ }
+
+ // pack files.
+
+ int NB_TOTAL_CRITERIA = 28;
+
+ for (int criteria = 0; criteria < NB_TOTAL_CRITERIA; criteria++)
+ {
+ // look for maxWidth.
+
+ int maxWidth = 0;
+ int nbFileMatching = 0;
+
+ String tokenToLook = ".criteria_" + criteria + ".png";
+ for (File file : fileArray)
+ {
+ if (file.getAbsoluteFile().toString().contains(tokenToLook))
+ {
+ nbFileMatching++;
+ int w = fileImageHashMap.get(file).getWidth();
+ // System.out.println("current w : " + w );
+ if (w > maxWidth)
+ maxWidth = w;
+ }
+ }
+
+ System.out.println("Max Width : " + maxWidth);
+
+ // create targetImage
+ if (nbFileMatching == 0)
+ {
+ new ToolTipFrame(
+ "<html>No file matching .criteria_XX.png found in the list of file provided.<br>Create those images by clicking the save button<br>on each XML panel</html>");
+ return;
+ }
+ ;
+ BufferedImage image2 = new BufferedImage(maxWidth, stepY * nbFileMatching, BufferedImage.TYPE_INT_BGR);
+ Graphics2D targetG = (Graphics2D) image2.getGraphics();
+
+ int currentY = 0;
+ for (File file : fileArray)
+ {
+ if (file.getAbsoluteFile().toString().contains(tokenToLook))
+ {
+ BufferedImage bi = fileImageHashMap.get(file);
+ targetG.drawImage(bi, null, 0, currentY);
+ if (criteria == 2)
+ {
+ targetG.setColor(Color.black);
+ targetG.drawString(file.getAbsoluteFile().toString(), 400, currentY + stepY / 2);
+ }
+ currentY += bi.getHeight();
+ }
+ }
+
+ try
+ {
+
+ String fileName = fileChooser.getSelectedFile().getParent() + "\\__crit_" + criteria + ".png";
+ System.out.println("Saving : " + fileName);
+ ImageIO.write(image2, "png", new File(fileName));
+
+ }
+ catch (IOException e1)
+ {
+ e1.printStackTrace();
+ }
+
+ }
+ }
+
+ System.out.println("Finished.");
+
+ }
+
+ ArrayList<VideoLabelPanel> videoLabelPanelArrayList = new ArrayList<VideoLabelPanel>();
+
+ public class ImageComponent extends JPanel implements MouseMotionListener, MouseListener
+ {
+ private static final long serialVersionUID = -5907107709763419248L;
+ BufferedImage image;
+ ArrayList<String> stringList = new ArrayList<String>();
+ double zoom = 1;
+
+ public void setZoom(double zoom)
+ {
+ this.zoom = zoom;
+ // System.out.println("zoom:"+zoom);
+ updateUI();
+ }
+
+ public ImageComponent()
+ {
+ // this.showDot = showDot;
+ }
+
+ public void setImage(BufferedImage image)
+ {
+ this.image = image;
+ this.setPreferredSize(new Dimension((int) (image.getWidth() * zoom), (int) (image.getHeight() * zoom)));
+ repaint();
+ this.addMouseMotionListener(this);
+ this.addMouseListener(this);
+ }
+
+ int y = 0;
+ int x = 0;
+ // boolean showDot = false;
+
+ @Override
+ protected void paintComponent(Graphics g)
+ {
+
+ super.paintComponent(g);
+
+ Graphics2D g2 = (Graphics2D) g;
+
+ if (image != null)
+ {
+ g2.scale(zoom, zoom);
+ g2.drawImage(image, null, 0, 0);
+
+ if (stringList.size() != 0)
+ {
+ float dash[] = {10.0f};
+ g2.setStroke(
+ new BasicStroke(1.0f, BasicStroke.CAP_BUTT, BasicStroke.JOIN_MITER, 10.0f, dash, 0.0f));
+ g2.drawLine(x, 0, x, image.getHeight());
+ }
+ }
+ }
+
+ @Override
+ public void mouseDragged(MouseEvent e)
+ {
+ x = e.getX();
+ repaint();
+ }
+
+ @Override
+ public void mouseMoved(MouseEvent e)
+ {
+
+ x = e.getX();
+
+ int index = e.getY() / stepY;
+ if (stringList.size() > index)
+ {
+ String string = stringList.get(index);
+ if (string != null)
+ {
+ legendLabel.setText(string);
+ }
+ }
+ }
+
+ @Override
+ public void mouseClicked(MouseEvent e)
+ {
+ x = e.getX();
+ repaint();
+ }
+
+ @Override
+ public void mouseEntered(MouseEvent e)
+ {
+ }
+
+ @Override
+ public void mouseExited(MouseEvent e)
+ {
+ }
+
+ @Override
+ public void mousePressed(MouseEvent e)
+ {
+ }
+
+ @Override
+ public void mouseReleased(MouseEvent e)
+ {
+ }
+
+ }
+
+ public class VideoLabelPanel implements ActionListener, MouseListener, MouseMotionListener
+ {
+
+ JPanel panel = null;
+
+ int firstFrame;
+ int lastFrame;
+
+ HashMap<Integer, MouseInfoRecord> mouseARecord = new HashMap<Integer, MouseInfoRecord>();
+ HashMap<Integer, MouseInfoRecord> mouseBRecord = new HashMap<Integer, MouseInfoRecord>();
+
+ int xPixelPetT = 1;
+
+ BufferedImage imageChrono = new BufferedImage(100, 100, BufferedImage.TYPE_INT_BGR);
+ ImageIcon imageIcon;
+ ImageComponent imageComponent = new ImageComponent();
+ JButton saveImageButton = new JButton("Save Chrono Image");
+ JButton exportEventsAsXML = new JButton("Export Events as XML");
+ JButton exportSpeedButton = new JButton("Export speed and distance");
+ // freeze settings: The scale and all the info are not propagated to this animal if the freeze is on.
+ JCheckBox freezeSettingsCheckBox = new JCheckBox("freeze settings");
+
+ JButton computeVisionInFollowButton = new JButton("Export follow vision graph");
+ JButton computeVisionWhenStoppedButton = new JButton("Export stop vision graph");
+
+ JButton computeLocationHeatMapButton = new JButton("Create location heat map");
+
+ JButton computeUSVStat = new JButton("Create USV stat");
+
+ File file;
+ File extraXMLFile; // contains extra labels to include to this video.
+ File videoFile;
+ FrameAccess frameAccess;
+ Animal animal = null;
+ SwimmingObject swimmingObject = null;
+
+ public VideoLabelPanel(File fileXML)
+ {
+
+ computeVisionInFollowButton.setToolTipText("Location of I in the vision of R (R following)");
+ computeVisionWhenStoppedButton.setToolTipText("Location of I in the vision of R (R stopped)");
+
+ JPanel sidePanel2 = GuiUtil.generatePanel("Video");
+
+ // check if the user is trying to load an avi file, and switch extension to XML if this is the case.
+ if (FileUtil.getFileExtension(fileXML.getAbsolutePath(), false).toLowerCase().equals("avi"))
+ {
+ System.out.println("Avi loaded. Switching to XML.");
+ fileXML = new File(FileUtil.setExtension(fileXML.getAbsolutePath(), ".avi.xml"));
+ System.out.println("XML file name is : " + fileXML.getAbsolutePath());
+ }
+
+ this.file = fileXML;
+
+ panel = GuiUtil.generatePanel(fileXML.getAbsolutePath());
+
+ panel.setLayout(new BorderLayout());
+
+ sidePanel2.add(GuiUtil.besidesPanel(saveImageButton));
+ sidePanel2.add(GuiUtil.besidesPanel(exportEventsAsXML));
+ sidePanel2.add(GuiUtil.besidesPanel(exportSpeedButton));
+ sidePanel2.add(GuiUtil.besidesPanel(computeVisionInFollowButton));
+ sidePanel2.add(GuiUtil.besidesPanel(computeVisionWhenStoppedButton));
+ sidePanel2.add(GuiUtil.besidesPanel(computeLocationHeatMapButton));
+ sidePanel2.add(GuiUtil.besidesPanel(computeUSVStat));
+
+ freezeSettingsCheckBox.setSelected(false);
+ sidePanel2.add(GuiUtil.besidesPanel(freezeSettingsCheckBox));
+
+ computeVisionInFollowButton.addActionListener(this);
+ computeVisionWhenStoppedButton.addActionListener(this);
+ computeLocationHeatMapButton.addActionListener(this);
+ computeUSVStat.addActionListener(this);
+ exportEventsAsXML.addActionListener(this);
+
+ panel.add(sidePanel2, BorderLayout.CENTER);
+ saveImageButton.addActionListener(this);
+ exportSpeedButton.addActionListener(this);
+
+ loadXML(fileXML);
+
+ panel.add(imageComponent, BorderLayout.EAST);
+
+ imageComponent.setImage(imageChrono);
+
+ imageComponent.addMouseListener(this);
+ imageComponent.addMouseMotionListener(this);
+
+ buildResultImage();
+
+ }
+
+ public boolean isFreezed()
+ {
+ return freezeSettingsCheckBox.isSelected();
+ }
+
+ DecimalFormat decimalFormat = new DecimalFormat("00");
+
+ class Periode
+ {
+ int start;
+ int end;
+
+ public int length()
+ {
+ return end - start;
+ }
+
+ MouseEventType mouseEvent;
+ }
+
+ String nbFrameToDisplayInSecond(float value)
+ {
+ value = (int) ((10f * value) / FPS) / 10f;
+ return "" + value + "s";
+ }
+
+ double demiVisionDeSouris = 2f * Math.PI / 3f;
+
+ /**
+ * @return This function search for the first frame recorded in the XML file.
+ * It then shift all data to remove all zero data at the beginning of the sequence.
+ */
+ public int trimAnalysisRecord()
+ {
+ // look at max t val.
+
+ int tMin = Integer.MAX_VALUE;
+ int tMax = 0;
+ {
+ Iterator<Integer> integerIterator = mouseARecord.keySet().iterator();
+ while (integerIterator.hasNext())
+ {
+ int val = integerIterator.next();
+ if (val > tMax)
+ tMax = val;
+ if (val < tMin)
+ tMin = val;
+ }
+ }
+ {
+ Iterator<Integer> integerIterator = mouseBRecord.keySet().iterator();
+ while (integerIterator.hasNext())
+ {
+ int val = integerIterator.next();
+ if (val > tMax)
+ tMax = val;
+ if (val < tMin)
+ tMin = val;
+ }
+ }
+
+ HashMap<Integer, MouseInfoRecord> mouseARecordReSorted = new HashMap<Integer, MouseInfoRecord>();
+ HashMap<Integer, MouseInfoRecord> mouseBRecordReSorted = new HashMap<Integer, MouseInfoRecord>();
+
+ // shift the data
+ if (tMin != 0)
+ {
+ {
+ boolean warningHasBeenDisplayed = false;
+ // System.out.println("Shifting data");
+ for (int t = tMin; t < tMax; t++)
+ {
+ MouseInfoRecord a = mouseARecord.get(t);
+ MouseInfoRecord b = mouseBRecord.get(t);
+ if ((a == null) || (b == null))
+ {
+ // +" \n\n Re start the tracker to perform the tracking on this frame.
+ String problem = "A tracking frame is missing at t=" + t + " in file " + this.file + ".";
+ System.out.println(problem);
+ if (!warningHasBeenDisplayed)
+ {
+ MessageDialog.showDialog("<html><center>" + problem
+ + " <hr>This Message appears once per animal file. <br>See ouput to get the total list of missing frames</html>",
+ MessageDialog.ERROR_MESSAGE);
+ warningHasBeenDisplayed = true;
+ }
+ }
+ else
+ {
+ mouseARecordReSorted.put(t - tMin, mouseARecord.get(t));
+ mouseARecord.remove(t);
+
+ // mouseBRecord.put( t-tMin, mouseBRecord.get( t ) );
+ mouseBRecordReSorted.put(t - tMin, mouseBRecord.get(t));
+ mouseBRecord.remove(t);
+ }
+
+ // System.out.println( "t-TMin:" +(t-tMin) + " t:"+ t);
+
+ // mouseARecord.put( t-tMin, mouseARecord.get( t ) );
+
+ // mouseARecordReSorted.put( t-tMin, mouseARecord.get( t ) );
+ // mouseARecord.remove( t );
+ //
+ // //mouseBRecord.put( t-tMin, mouseBRecord.get( t ) );
+ // mouseBRecordReSorted.put( t-tMin, mouseBRecord.get( t ) );
+ // mouseBRecord.remove( t );
+ }
+ }
+
+ mouseARecord = mouseARecordReSorted;
+ mouseBRecord = mouseBRecordReSorted;
+ }
+
+ // System.out.println( "--- check mouse record ");
+ //
+ // MouseInfoRecord test = mouseARecord.get( 4471 );
+ // System.out.println( "contain object ? " + mouseARecord.containsKey( 4471 ) );
+ // System.out.println( "record is " + test );
+
+ // // test
+ // for ( int t = tMin ; t< mouseARecord.size() ; t++ )
+ // {
+ // MouseInfoRecord info = mouseARecord.get( t );
+ // if ( info == null )
+ // {
+ // System.out.println( "error at t:" + t );
+ // System.out.println( "null" );
+ // }
+ //
+ //// mouseARecord.put( t-tMin, mouseARecord.get( t ) );
+ //// mouseARecord.remove( t );
+ //
+ //// mouseBRecord.put( t-tMin, mouseBRecord.get( t ) );
+ //// mouseBRecord.remove( t );
+ // }
+
+ return tMin;
+ }
+
+ public void buildResultImage()
+ {
+
+ ArrayList<Periode> eventContactList = new ArrayList<Periode>();
+
+ Icy.getMainInterface().getSwimmingPool().remove(swimmingObject);
+ animal = new Animal(file.getName());
+ swimmingObject = new SwimmingObject(animal);
+
+ // // look at max t val.
+ //
+ // int tMin = Integer.MAX_VALUE;
+ // int tMax = 0;
+ // {
+ // Iterator<Integer> integerIterator = mouseARecord.keySet().iterator();
+ // while ( integerIterator.hasNext() )
+ // {
+ // int val = integerIterator.next();
+ // if ( val > tMax ) tMax = val;
+ // if ( val < tMin ) tMin = val;
+ // }
+ // }
+ // {
+ // Iterator<Integer> integerIterator = mouseBRecord.keySet().iterator();
+ // while ( integerIterator.hasNext() )
+ // {
+ // int val = integerIterator.next();
+ // if ( val > tMax ) tMax = val;
+ // if ( val < tMin ) tMin = val;
+ // }
+ // }
+
+ // trimAnalysisRecord();
+
+ int tMin = 0;
+
+ START_MINUTE = Integer.parseInt(computeImageStartMinuteTextField.getText());
+ NB_MINUTE = Integer.parseInt(computeImageNbMinuteTextField.getText());
+
+ // FPS = Integer.parseInt( compute )
+
+ firstFrame = (int) (tMin + START_MINUTE * 60 * FPS);
+ // lastFrame = tMax;
+
+ // {
+ lastFrame = (int) (firstFrame + NB_MINUTE * 60 * FPS);
+ // }
+
+ System.out.println("first frame : " + firstFrame);
+ System.out.println("last frame : " + lastFrame);
+
+ int tMax = lastFrame;
+
+ int nbExtraEvent = 15; // getNbExtraEvent( file );
+
+ imageChrono = new BufferedImage(lastFrame - firstFrame, 480 + nbExtraEvent * stepY,
+ BufferedImage.TYPE_INT_BGR);
+
+ imageComponent.setImage(imageChrono);
+
+ panel.updateUI();
+
+ int currentY = 0;
+
+ Graphics2D g2 = (Graphics2D) imageChrono.getGraphics();
+
+ // empty image
+
+ g2.fillRect(0, 0, imageChrono.getWidth(), imageChrono.getHeight());
+
+ // Clean up data
+ {
+
+ for (int t = 0; t < tMax; t++)
+ {
+ // System.out.println(t + " / " + tMax );
+ // System.out.println( t );
+ if (mouseARecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ if (mouseA == null)
+ {
+ System.out.println("no mouse A record at t=" + t);
+ }
+ mouseA.distanceIsInferiorToThreshold1 = false;
+ mouseA.distanceIsInferiorToThreshold2 = false;
+ mouseA.isEscaping = false;
+ mouseA.isEscapingFromOtherAndUnTouch = false;
+ mouseA.isGettingToOtherAndTouch = false;
+ mouseA.isGoingToTheOther = false;
+ mouseA.mouseGetToOtherMouseAndEscapeInOut = false;
+ mouseA.mouseGetToOtherMouseAndOtherEscapeInOut = false;
+ mouseA.eventA = false;
+ mouseA.eventB = false;
+ mouseA.eventC = false;
+ mouseA.eventD = false;
+ mouseA.isBehindTheOther = false;
+ mouseA.isBesideTheOther = false;
+ mouseA.thisHeadWithOtherGenitalContact = false;
+ }
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+ mouseB.distanceIsInferiorToThreshold1 = false;
+ mouseB.distanceIsInferiorToThreshold2 = false;
+ mouseB.isEscaping = false;
+ mouseB.isEscapingFromOtherAndUnTouch = false;
+ mouseB.isGettingToOtherAndTouch = false;
+ mouseB.isGoingToTheOther = false;
+ mouseB.mouseGetToOtherMouseAndEscapeInOut = false;
+ mouseB.mouseGetToOtherMouseAndOtherEscapeInOut = false;
+ mouseB.eventA = false;
+ mouseB.eventB = false;
+ mouseB.eventC = false;
+ mouseB.eventD = false;
+ mouseB.isBehindTheOther = false;
+ mouseB.isBesideTheOther = false;
+ mouseB.thisHeadWithOtherGenitalContact = false;
+ }
+ }
+ }
+
+ // DISPLAY TIME
+ {
+ g2.setColor(Color.black);
+
+ {
+ for (int t = 0; t < tMax; t++)
+ {
+
+ if (t % (FPS * 2) < 1)
+ {
+ g2.drawString(
+ "" + (int) (t / (FPS * 60)) + ":" + decimalFormat.format((int) (t / FPS % 60)),
+ t - firstFrame, currentY + 12);
+ g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
+ }
+
+ }
+ }
+ currentY += stepY;
+ imageComponent.stringList.add("Time");
+ }
+
+ {
+
+ // Label 2
+ // Distance de souris A a B est inferieure a SEUIL_DISTANCE_1
+ boolean event = false;
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine distanceLessThanThreshold1TimeLine = new EventTimeLine("Distance < thr 1",
+ EventType.DISTANCE_INFERIOR_THRESHOLD_1, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(distanceLessThanThreshold1TimeLine);
+
+ g2.setColor(Color.red);
+ for (int t = 0; t < tMax; t++)
+ {
+ // System.out.println("working on t=" + t );
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ // System.out.println("contain keys");
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float minDistance = Float.MAX_VALUE;
+ minDistance = getMin(minDistance,
+ (float) mouseA.bodyPosition.distance(mouseB.bodyPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.bodyPosition.distance(mouseB.headPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.bodyPosition.distance(mouseB.tailPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.headPosition.distance(mouseB.bodyPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.headPosition.distance(mouseB.headPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.headPosition.distance(mouseB.tailPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.tailPosition.distance(mouseB.bodyPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.tailPosition.distance(mouseB.headPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.tailPosition.distance(mouseB.tailPosition));
+
+ // System.out.println( "min distance = " + minDistance );
+
+ if (minDistance < SEUIL_DISTANCE_1)
+ {
+ distanceLessThanThreshold1TimeLine.addPunctualEvent(t - firstFrame);
+ mouseA.distanceIsInferiorToThreshold1 = true;
+ mouseB.distanceIsInferiorToThreshold1 = true;
+ }
+ else
+ {
+ mouseA.distanceIsInferiorToThreshold1 = false;
+ mouseB.distanceIsInferiorToThreshold1 = false;
+ }
+
+ }
+ }
+
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : distanceLessThanThreshold1TimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Distance less than THRESHOLD 1 nbEvent:" + nbEvent + " totalT:"
+ + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+
+ currentY += stepY;
+
+ imageComponent.stringList.add(string);
+
+ }
+
+ {
+ // LABEL 3
+ // Distance de souris A a B est inferieure a SEUIL_DISTANCE_2
+ boolean event = false;
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine distanceLessThanThreshold2TimeLine = new EventTimeLine("Distance < thr 2",
+ EventType.DISTANCE_INFERIOR_THRESHOLD_2, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(distanceLessThanThreshold2TimeLine);
+
+ g2.setColor(Color.orange);
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float minDistance = Float.MAX_VALUE;
+ minDistance = getMin(minDistance,
+ (float) mouseA.bodyPosition.distance(mouseB.bodyPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.bodyPosition.distance(mouseB.headPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.bodyPosition.distance(mouseB.tailPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.headPosition.distance(mouseB.bodyPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.headPosition.distance(mouseB.headPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.headPosition.distance(mouseB.tailPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.tailPosition.distance(mouseB.bodyPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.tailPosition.distance(mouseB.headPosition));
+ minDistance = getMin(minDistance,
+ (float) mouseA.tailPosition.distance(mouseB.tailPosition));
+
+ if (minDistance < SEUIL_DISTANCE_2)
+ {
+ distanceLessThanThreshold2TimeLine.addPunctualEvent(t - firstFrame);
+ mouseA.distanceIsInferiorToThreshold2 = true;
+ mouseB.distanceIsInferiorToThreshold2 = true;
+ }
+ else
+ {
+ mouseA.distanceIsInferiorToThreshold2 = false;
+ mouseB.distanceIsInferiorToThreshold2 = false;
+ }
+
+ }
+ }
+
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : distanceLessThanThreshold2TimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Distance less than THRESHOLD 2 nbEvent:" + nbEvent + " totalT:"
+ + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+
+ currentY += stepY;
+
+ imageComponent.stringList.add(string);
+ }
+
+ {
+ // LABEL 4
+ // Head A - Head B SEUIL_DISTANCE_HEAD_HEAD
+ boolean event = false;
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine OralOralTimeLine = new EventTimeLine("Oral-Oral", EventType.ORAL_ORAL,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(OralOralTimeLine);
+
+ g2.setColor(Color.black);
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float minDistance = Float.MAX_VALUE;
+ minDistance = getMin(minDistance,
+ (float) mouseA.headPosition.distance(mouseB.headPosition));
+ if (minDistance < SEUIL_DISTANCE_HEAD_HEAD)
+ {
+ OralOralTimeLine.addPunctualEvent(t - firstFrame);
+
+ }
+ else
+ {
+
+ }
+ }
+ }
+
+ // display
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : OralOralTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Head - Head : nbevent: " + nbEvent + " TotalT=" + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+
+ currentY += stepY;
+ imageComponent.stringList.add(string);
+
+ }
+ {
+ // LABEL 5
+ // Head A - Genital B SEUIL_DISTANCE_HEAD_GENITAL
+ boolean event = false;
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("Oral A - Genital B", EventType.ORAL_A_GENITAL_B,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ g2.setColor(Color.RED);
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float minDistance = Float.MAX_VALUE;
+ minDistance = getMin(minDistance,
+ (float) mouseA.headPosition.distance(mouseB.tailPosition));
+ if (minDistance < SEUIL_DISTANCE_HEAD_GENITAL)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ mouseA.thisHeadWithOtherGenitalContact = true;
+
+ }
+ else
+ {
+
+ }
+ }
+ }
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ g2.drawLine(0, currentY - 1, imageChrono.getWidth(), currentY - 1);
+ String string = "Head A - Genital B nbEvent:" + nbEvent + " TotalT:" + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+
+ currentY += stepY;
+ imageComponent.stringList.add(string);
+
+ }
+ {
+ // LABEL 6
+ // Head B - Genital A SEUIL_DISTANCE_HEAD_GENITAL
+ boolean event = false;
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("Oral B - Genital A", EventType.ORAL_B_GENITAL_A,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ g2.setColor(Color.GREEN);
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float minDistance = Float.MAX_VALUE;
+ minDistance = getMin(minDistance,
+ (float) mouseA.tailPosition.distance(mouseB.headPosition));
+ if (minDistance < SEUIL_DISTANCE_HEAD_GENITAL)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ mouseB.thisHeadWithOtherGenitalContact = true;
+
+ }
+ else
+ {
+
+ }
+ }
+ }
+
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Head B - Genital A : nbEvent:" + nbEvent + " totalT:"
+ + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+ {
+ // Mouse A is behind Mouse B
+ boolean event = false;
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("Mouse A behind B (any distance)", EventType.A_BEHIND_B,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float mouseABodyToMouseBTail = (float) mouseA.bodyPosition.distance(mouseB.tailPosition);
+ float mouseABodyToMouseBHead = (float) mouseA.bodyPosition.distance(mouseB.headPosition);
+
+ if (mouseABodyToMouseBTail < mouseABodyToMouseBHead)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ mouseA.isBehindTheOther = true;
+
+ }
+ else
+ {
+
+ }
+ }
+ }
+
+ g2.setColor(Color.RED);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ g2.drawLine(0, currentY - 1, imageChrono.getWidth(), currentY - 1);
+
+ String string = "Mouse A is behind B nbevent:" + nbEvent + " totalT:" + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse B is behind Mouse A
+ boolean event = false;
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("Mouse B behind A (any distance)", EventType.B_BEHIND_A,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float mouseBBodyToMouseATail = (float) mouseB.bodyPosition.distance(mouseA.tailPosition);
+ float mouseBBodyToMouseAHead = (float) mouseB.bodyPosition.distance(mouseA.headPosition);
+
+ if (mouseBBodyToMouseATail < mouseBBodyToMouseAHead)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ mouseB.isBehindTheOther = true;
+
+ }
+ else
+ {
+ event = false;
+ }
+ }
+ }
+
+ g2.setColor(Color.GREEN);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse B is behind A nbevent:" + nbEvent + " totalT:" + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+ currentY += stepY;
+ }
+ {
+ // Mice are next to the each other and body distance < DISTANCE_2 (same way)
+ // Calcul par produit scalaire. si positif meme sens.
+ boolean event = false;
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("Mouse next to each other (same way) < distance 2",
+ EventType.BESIDE_SAME_WAY, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float mouseABodyToMouseBBody = (float) mouseA.bodyPosition.distance(mouseB.bodyPosition);
+ float mouseAHeadToMouseBHead = (float) mouseA.headPosition.distance(mouseB.headPosition);
+
+ double vectSourisAX = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
+ double vectSourisAY = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
+ double vectSourisBX = mouseB.headPosition.getX() - mouseB.bodyPosition.getX();
+ double vectSourisBY = mouseB.headPosition.getY() - mouseB.bodyPosition.getY();
+
+ double produitScalaire = vectSourisAX * vectSourisBX + vectSourisAY * vectSourisBY;
+ double distance = Double.parseDouble(distance1TextField.getText());
+
+ if (produitScalaire >= 0 && mouseAHeadToMouseBHead < SEUIL_DISTANCE_1
+ && mouseABodyToMouseBBody < SEUIL_DISTANCE_1)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ mouseA.isBesideTheOther = true;
+ mouseB.isBesideTheOther = true;
+
+ }
+ else
+ {
+
+ }
+
+ }
+ }
+
+ g2.setColor(Color.DARK_GRAY);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mice are next to the each other and body distance < DISTANCE_2 (same way) nbevent:"
+ + nbEvent + " totalT:" + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+ currentY += stepY;
+ }
+ {
+ // Mice are next to the each other and body distance < DISTANCE_2 (opposite way)
+ boolean event = false;
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("Mouse next to each other (opposite way) < distance 2",
+ EventType.BESIDE_OPPOSITE_WAY, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double vectSourisAX = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
+ double vectSourisAY = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
+ double vectSourisBX = mouseB.headPosition.getX() - mouseB.bodyPosition.getX();
+ double vectSourisBY = mouseB.headPosition.getY() - mouseB.bodyPosition.getY();
+
+ double produitScalaire = vectSourisAX * vectSourisBX + vectSourisAY * vectSourisBY;
+
+ float mouseABodyToMouseBHead = (float) mouseA.bodyPosition.distance(mouseB.headPosition);
+ float mouseAHeadToMouseBBody = (float) mouseA.headPosition.distance(mouseB.bodyPosition);
+
+ if (produitScalaire < 0 && mouseABodyToMouseBHead < SEUIL_DISTANCE_1
+ && mouseAHeadToMouseBBody < SEUIL_DISTANCE_1)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ }
+ else
+ {
+
+ }
+
+ }
+ }
+
+ g2.setColor(Color.BLACK);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mice are next to the each other and body distance < DISTANCE_2 (opposite) nbevent:"
+ + nbEvent + " totalT:" + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ /** frameWindow est utilisé pour lisser le calcul de deplacement entre deux points de temps. t-framewindow et t+frameWindow */
+ int frameWindow = 6; // 5
+
+ {
+ EventTimeLine eventTimeLine = new EventTimeLine("Mouse A speed", EventType.MOUSE_A_SPEED,
+ TimeLineCategory.USE_DISCRETE_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ // Mice A speed is from 0 to SPEED_THRESHOLD_1
+ float nbVal = 0;
+ float totalDistance = 0;
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t - frameWindow))
+ if (mouseBRecord.containsKey(t - frameWindow))
+ if (mouseARecord.containsKey(t + frameWindow))
+ if (mouseBRecord.containsKey(t + frameWindow))
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
+ MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
+ MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
+ MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float distance = (float) mouseAprev.bodyPosition
+ .distance(mouseAnext.bodyPosition);
+ distance /= (float) (frameWindow * 2 + 1); // pour obtenir une vitesse par frame.
+
+ nbVal++;
+ totalDistance += distance;
+
+ mouseA.speed = distance;
+
+ eventTimeLine.addValue(t - firstFrame, distance);
+
+ if (distance <= SPEED_THRESHOLD_1)
+ {
+ g2.setColor(Color.BLACK);
+ g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
+ }
+ if ((distance > SPEED_THRESHOLD_1) && (distance < SPEED_THRESHOLD_2))
+ {
+ g2.setColor(Color.DARK_GRAY);
+ g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
+ }
+ if ((distance >= SPEED_THRESHOLD_2))
+ {
+ g2.setColor(Color.GRAY);
+ g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
+ }
+
+ }
+ }
+
+ g2.setColor(Color.red);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse A speed slow=black fast=gray mean speed: " + totalDistance / nbVal;
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ EventTimeLine eventTimeLine = new EventTimeLine("Mouse B speed", EventType.MOUSE_B_SPEED,
+ TimeLineCategory.USE_DISCRETE_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ // Mice B speed is from 0 to SPEED_THRESHOLD_1
+ float nbVal = 0;
+ float totalDistance = 0;
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t - frameWindow))
+ if (mouseBRecord.containsKey(t - frameWindow))
+ if (mouseARecord.containsKey(t + frameWindow))
+ if (mouseBRecord.containsKey(t + frameWindow))
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
+ MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
+ MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
+ MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ float distance = (float) mouseBprev.bodyPosition
+ .distance(mouseBnext.bodyPosition);
+ distance /= (float) (frameWindow * 2 + 1); // pour obtenir une vitesse par frame.
+
+ mouseB.speed = distance;
+ nbVal++;
+ totalDistance += distance;
+
+ eventTimeLine.addValue(t - firstFrame, distance);
+
+ if (distance <= SPEED_THRESHOLD_1)
+ {
+ g2.setColor(Color.BLACK);
+ g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
+ }
+ if ((distance > SPEED_THRESHOLD_1) && (distance < SPEED_THRESHOLD_2))
+ {
+ g2.setColor(Color.DARK_GRAY);
+ g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
+ }
+ if ((distance >= SPEED_THRESHOLD_2))
+ {
+ g2.setColor(Color.GRAY);
+ g2.drawLine(t - firstFrame, currentY, t - firstFrame, currentY + stepY);
+ }
+
+ }
+ }
+ g2.setColor(Color.red);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse B speed slow=black fast=gray mean speed: " + totalDistance / nbVal;
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+ currentY += stepY;
+ }
+
+ {
+ // Mouse A Stop
+ boolean event = false;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("A Stop", EventType.A_STOP,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t - frameWindow))
+ if (mouseBRecord.containsKey(t - frameWindow))
+ if (mouseARecord.containsKey(t + frameWindow))
+ if (mouseBRecord.containsKey(t + frameWindow))
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
+ MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
+ MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
+ MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceTPrev = mouseAprev.bodyPosition
+ .distance(mouseBprev.bodyPosition);
+ double distanceTNext = mouseAnext.bodyPosition
+ .distance(mouseBnext.bodyPosition);
+
+ if (mouseA.speed < SPEED_THRESHOLD_1)
+ {
+
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ }
+ else
+ {
+ event = false;
+ }
+
+ }
+ }
+
+ g2.setColor(Color.red);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "A Stop : nbEvent : " + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse B Stop
+ boolean event = false;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("B Stop", EventType.B_STOP,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t - frameWindow))
+ if (mouseBRecord.containsKey(t - frameWindow))
+ if (mouseARecord.containsKey(t + frameWindow))
+ if (mouseBRecord.containsKey(t + frameWindow))
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
+ MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
+ MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
+ MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceTPrev = mouseAprev.bodyPosition
+ .distance(mouseBprev.bodyPosition);
+ double distanceTNext = mouseAnext.bodyPosition
+ .distance(mouseBnext.bodyPosition);
+
+ if (mouseB.speed < SPEED_THRESHOLD_1)
+ {
+
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ }
+ else
+ {
+ event = false;
+ }
+
+ }
+ }
+
+ g2.setColor(Color.green);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "B Stop : nbEvent : " + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse A Speed > Mouse B Speed & Mouse A getting to B
+ boolean event = false;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("A Speed > B Speed & A GET TO B",
+ EventType.A_SPEED_HIGHER_THAN_B_SPEED_AND_A_GET_TO_B, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t - frameWindow))
+ if (mouseBRecord.containsKey(t - frameWindow))
+ if (mouseARecord.containsKey(t + frameWindow))
+ if (mouseBRecord.containsKey(t + frameWindow))
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
+ MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
+ MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
+ MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceTPrev = mouseAprev.bodyPosition
+ .distance(mouseBprev.bodyPosition);
+ double distanceTNext = mouseAnext.bodyPosition
+ .distance(mouseBnext.bodyPosition);
+
+ if (mouseA.speed > mouseB.speed)
+ {
+ if (distanceTPrev > distanceTNext)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ mouseA.isGoingToTheOther = true;
+
+ }
+ else
+ {
+
+ }
+ }
+ else
+ {
+ event = false;
+ }
+
+ }
+ }
+
+ g2.setColor(Color.red);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse A Speed > Mouse B Speed & Mouse A getting to B : nbEvent : " + nbEvent
+ + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+ {
+ // Mouse B Speed > Mouse A Speed & Mouse B getting to A
+ boolean event = false;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("B Speed > A Speed & B GET TO A",
+ EventType.B_SPEED_HIGHER_THAN_A_SPEED_AND_B_GET_TO_A, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t - frameWindow))
+ if (mouseBRecord.containsKey(t - frameWindow))
+ if (mouseARecord.containsKey(t + frameWindow))
+ if (mouseBRecord.containsKey(t + frameWindow))
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
+ MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
+ MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
+ MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceTPrev = mouseAprev.bodyPosition
+ .distance(mouseBprev.bodyPosition);
+ double distanceTNext = mouseAnext.bodyPosition
+ .distance(mouseBnext.bodyPosition);
+
+ if (mouseB.speed > mouseA.speed)
+ {
+ if (distanceTPrev > distanceTNext)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ mouseB.isGoingToTheOther = true;
+
+ }
+ else
+ {
+
+ }
+ }
+ else
+ {
+ event = false;
+ }
+
+ }
+ }
+ g2.setColor(Color.green);
+
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse B Speed > Mouse A Speed & Mouse B getting to A : nbEvent : " + nbEvent
+ + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse A Speed > Mouse B Speed & Mouse A escaping from to B
+
+ boolean event = false;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("A Speed > B Speed & A escape B",
+ EventType.A_SPEED_HIGHER_THAN_B_SPEED_AND_A_ESCAPE_B, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t - frameWindow))
+ if (mouseBRecord.containsKey(t - frameWindow))
+ if (mouseARecord.containsKey(t + frameWindow))
+ if (mouseBRecord.containsKey(t + frameWindow))
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
+ MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
+ MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
+ MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceTPrev = mouseAprev.bodyPosition
+ .distance(mouseBprev.bodyPosition);
+ double distanceTNext = mouseAnext.bodyPosition
+ .distance(mouseBnext.bodyPosition);
+
+ if (mouseA.speed > mouseB.speed)
+ {
+ if (distanceTPrev < distanceTNext)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ mouseA.isEscaping = true;
+
+ }
+ else
+ {
+
+ mouseA.isEscaping = false;
+ }
+ }
+ else
+ {
+
+ }
+
+ }
+ }
+ g2.setColor(Color.red);
+
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse A Speed > Mouse B Speed & Mouse A escaping from B : nbEvent : " + nbEvent
+ + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse B Speed > Mouse A Speed & Mouse B escaping from A
+
+ boolean event = false;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventTimeLine eventTimeLine = new EventTimeLine("B Speed > A Speed & B escape A",
+ EventType.B_SPEED_HIGHER_THAN_A_SPEED_AND_B_ESCAPE_A, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t - frameWindow))
+ if (mouseBRecord.containsKey(t - frameWindow))
+ if (mouseARecord.containsKey(t + frameWindow))
+ if (mouseBRecord.containsKey(t + frameWindow))
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseAprev = mouseARecord.get(t - frameWindow);
+ MouseInfoRecord mouseBprev = mouseBRecord.get(t - frameWindow);
+ MouseInfoRecord mouseAnext = mouseARecord.get(t + frameWindow);
+ MouseInfoRecord mouseBnext = mouseBRecord.get(t + frameWindow);
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceTPrev = mouseAprev.bodyPosition
+ .distance(mouseBprev.bodyPosition);
+ double distanceTNext = mouseAnext.bodyPosition
+ .distance(mouseBnext.bodyPosition);
+
+ if (mouseB.speed > mouseA.speed)
+ {
+ if (distanceTPrev < distanceTNext)
+ {
+
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ mouseB.isEscaping = true;
+
+ }
+ else
+ {
+ mouseB.isEscaping = false;
+
+ }
+ }
+ else
+ {
+
+ }
+
+ }
+ }
+ g2.setColor(Color.green);
+
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse B Speed > Mouse A Speed & Mouse B escaping from A : nbEvent : " + nbEvent
+ + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse A going to B and finishing with contact starting from no contact.
+
+ EventTimeLine eventTimeLine = new EventTimeLine(
+ "Mouse A going to B and finishing with contact starting from no contact",
+ EventType.A_GOTO_B_FINISH_CONTACT_START_NO_CONTACT, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbEvent = 0;
+ float total = 0;
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ if (mouseA.distanceIsInferiorToThreshold1) // contact
+ {
+ ArrayList<Integer> timeToFill = new ArrayList<Integer>();
+ // loop back if there is an approach
+ for (int t2 = t; t2 > 0; t2--)
+ {
+ if (mouseARecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
+ if (mouseAt2.isGoingToTheOther)
+ {
+ timeToFill.add(t2);
+
+ if (!mouseAt2.distanceIsInferiorToThreshold1)
+ {
+ for (int t3 = t2; t3 > 0; t3--)
+ {
+ if (mouseARecord.containsKey(t3))
+ {
+ MouseInfoRecord mouseAt3 = mouseARecord.get(t3);
+ if (mouseAt3.isGoingToTheOther)
+ {
+ timeToFill.add(t3);
+ }
+ else
+ {
+ break;
+ }
+ }
+ }
+ break;
+ }
+
+ }
+ else // sortie de la boucle de remontee
+ {
+ // check if we started from a position far from the other.
+ if (mouseAt2.distanceIsInferiorToThreshold1)
+ timeToFill.clear();
+ break;
+ }
+ }
+ }
+
+ // si le time to fill est >0 c'est qu'il a trouve qq chose.
+ // il faut maintenant avancer dans le temps jusqu a la fin de l evenement
+ if (timeToFill.size() > 0)
+ {
+ for (int t2 = t + 1; t2 < tMax; t2++)
+ {
+ MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
+ if (mouseAt2.isGoingToTheOther)
+ {
+ timeToFill.add(t2);
+ t = t2;
+ }
+ else
+ {
+ break;
+ }
+ }
+ }
+
+ for (int i = 0; i < timeToFill.size(); i++)
+ {
+ int index = timeToFill.get(i);
+ MouseInfoRecord mouseAt2 = mouseARecord.get(index);
+ mouseAt2.isGettingToOtherAndTouch = true;
+
+ eventTimeLine.addPunctualEvent(index - firstFrame);
+
+ }
+
+ }
+
+ }
+ }
+
+ g2.setColor(Color.red);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ // System.out.println( "event. StartFrame: " + eventCriteria.startFrame + " EndFrame: " + eventCriteria.endFrame );
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse A going to B and finishing with contact starting from no contact.: nbEvent : "
+ + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse B going to A and finishing with contact and starting from > Threshold Distance.
+
+ EventTimeLine eventTimeLine = new EventTimeLine(
+ "Mouse B going to A and finishing with contact and starting from no contact",
+ EventType.B_GOTO_A_FINISH_CONTACT_START_NO_CONTACT, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ if (mouseA.distanceIsInferiorToThreshold1) // contact
+ {
+
+ ArrayList<Integer> timeToFill = new ArrayList<Integer>();
+ // loop back if there is an approach
+ for (int t2 = t; t2 > 0; t2--)
+ {
+
+ if (mouseBRecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
+ if (mouseBt2.isGoingToTheOther)
+ {
+ timeToFill.add(t2);
+
+ if (!mouseBt2.distanceIsInferiorToThreshold1)
+ {
+ for (int t3 = t2; t3 > 0; t3--)
+ {
+ if (mouseBRecord.containsKey(t3))
+ {
+ MouseInfoRecord mouseBt3 = mouseBRecord.get(t3);
+ if (mouseBt3.isGoingToTheOther)
+ {
+ timeToFill.add(t3);
+ }
+ else
+ {
+ break;
+ }
+ }
+ }
+ break;
+ }
+
+ }
+ else // sortie de la boucle de remontee
+ {
+ // check if we started from a position far from the other.
+ if (mouseBt2.distanceIsInferiorToThreshold1)
+ timeToFill.clear();
+ break;
+ }
+ }
+ }
+
+ // si le time to fill est >0 c'est qu'il a trouve qq chose.
+ // il faut maintenant avancer dans le temps jusqu a la fin de l evenement
+ if (timeToFill.size() > 0)
+ {
+ for (int t2 = t + 1; t2 < tMax; t2++)
+ {
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
+ if (mouseBt2.isGoingToTheOther)
+ {
+ timeToFill.add(t2);
+ t = t2;
+ }
+ else
+ {
+ break;
+ }
+ }
+ }
+
+ g2.setColor(Color.green);
+ if (timeToFill.size() > 0)
+ nbEvent++;
+ total += timeToFill.size();
+ for (int i = 0; i < timeToFill.size(); i++)
+ {
+ int index = timeToFill.get(i);
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(index);
+ mouseBt2.isGettingToOtherAndTouch = true;
+ eventTimeLine.addPunctualEvent(index - firstFrame);
+
+ }
+
+ }
+
+ }
+ }
+
+ g2.setColor(Color.green);
+ // draw result
+
+ nbEvent = 0;
+ total = 0;
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse B going to A and finishing with contact starting from no contact.: nbEvent : "
+ + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse A escaping after contact. finish with out threshold.
+
+ EventTimeLine eventTimeLine = new EventTimeLine(
+ "Mouse A escaping after contact. finish with out threshold.",
+ EventType.A_ESCAPE_AFTER_CONTACT_FINISH_WITH_NO_CONTACT, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ if (mouseA.distanceIsInferiorToThreshold1) // contact
+ {
+ ArrayList<Integer> timeToFill = new ArrayList<Integer>();
+ // loop back if there is an approach
+ for (int t2 = t; t2 < Integer.MAX_VALUE; t2++)
+ {
+ if (mouseARecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
+ if (mouseAt2.isEscaping)
+ {
+ timeToFill.add(t2);
+
+ if (!mouseAt2.distanceIsInferiorToThreshold1)
+ {
+
+ for (int t3 = t2; t3 < tMax; t3++)
+ {
+ if (mouseARecord.containsKey(t3))
+ {
+ MouseInfoRecord mouseAt3 = mouseARecord.get(t3);
+ if (mouseAt3.isEscaping)
+ {
+ timeToFill.add(t3);
+ }
+ else
+ {
+ break;
+ }
+ }
+ }
+ break;
+ }
+
+ }
+ else // sortie de la boucle de remontee
+ {
+ // check if we started from a position far from the other.
+ if (mouseAt2.distanceIsInferiorToThreshold1)
+ timeToFill.clear();
+ break;
+ }
+ }
+ else
+ {
+ break;
+ }
+ }
+ g2.setColor(Color.red);
+ if (timeToFill.size() > 0)
+ nbEvent++;
+ total += timeToFill.size();
+
+ for (int i = 0; i < timeToFill.size(); i++)
+ {
+ int index = timeToFill.get(i);
+ MouseInfoRecord mouseAt2 = mouseARecord.get(index);
+ mouseAt2.isEscapingFromOtherAndUnTouch = true;
+ eventTimeLine.addPunctualEvent(index - firstFrame);
+
+ }
+ t += timeToFill.size();
+ }
+
+ }
+ }
+ g2.setColor(Color.red);
+
+ // draw result
+ nbEvent = 0;
+ total = 0;
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse A escaping after contact and finish out of distance threshold. : nbEvent : "
+ + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse B escaping after contact. finish with out threshold.
+
+ EventTimeLine eventTimeLine = new EventTimeLine(
+ "Mouse B escaping after contact. finish with out threshold.",
+ EventType.B_ESCAPE_AFTER_CONTACT_FINISH_WITH_NO_CONTACT, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ if (mouseA.distanceIsInferiorToThreshold1) // contact
+ {
+ ArrayList<Integer> timeToFill = new ArrayList<Integer>();
+ // loop back if there is an approach
+ for (int t2 = t; t2 < Integer.MAX_VALUE; t2++)
+ {
+ if (mouseBRecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
+ if (mouseBt2.isEscaping)
+ {
+ timeToFill.add(t2);
+
+ if (!mouseBt2.distanceIsInferiorToThreshold1)
+ {
+
+ for (int t3 = t2; t3 < tMax; t3++)
+ {
+ if (mouseBRecord.containsKey(t3))
+ {
+ MouseInfoRecord mouseBt3 = mouseBRecord.get(t3);
+ if (mouseBt3.isEscaping)
+ {
+ timeToFill.add(t3);
+ }
+ else
+ {
+ break;
+ }
+ }
+ }
+ break;
+ }
+
+ }
+ else
+ {
+
+ if (mouseBt2.distanceIsInferiorToThreshold1)
+ timeToFill.clear();
+ break;
+ }
+ }
+ else
+ {
+ break;
+ }
+ }
+ g2.setColor(Color.green);
+ if (timeToFill.size() > 0)
+ nbEvent++;
+ total += timeToFill.size();
+
+ for (int i = 0; i < timeToFill.size(); i++)
+ {
+ int index = timeToFill.get(i);
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(index);
+ mouseBt2.isEscapingFromOtherAndUnTouch = true;
+
+ eventTimeLine.addPunctualEvent(index - firstFrame);
+
+ }
+ t += timeToFill.size();
+ }
+
+ }
+ }
+ g2.setColor(Color.green);
+
+ nbEvent = 0;
+ total = 0;
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse B escaping after contact and finish out of distance threshold : nbEvent : "
+ + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse A get to mouse B and B escape with threshold distance in and out.
+
+ EventTimeLine eventTimeLine = new EventTimeLine("A get to B and B escape threshold in and out",
+ EventType.A_GOTO_B_AND_B_ESCAPE_THRESHOLD_IN_OUT, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ if (mouseA.isGettingToOtherAndTouch) // contact
+ {
+ ArrayList<Integer> timeToFill = new ArrayList<Integer>();
+
+ boolean step1ok = false;
+ boolean step2ok = false;
+ boolean step3ok = false;
+
+ int seeker = t;
+
+ // STEP 1
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseARecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
+ if (mouseAt2.isGettingToOtherAndTouch)
+ {
+ timeToFill.add(t2);
+ }
+ else // sortie de la boucle de remontee
+ {
+ step1ok = true;
+ break;
+ }
+ }
+ }
+
+ // STEP 2
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseARecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
+ if (mouseAt2.distanceIsInferiorToThreshold1)
+ {
+ timeToFill.add(t2);
+ }
+ else // sortie de la boucle de remontee
+ {
+ step2ok = true;
+ break;
+ }
+ }
+ }
+
+ // STEP 3
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseBRecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
+ if (mouseBt2.isEscapingFromOtherAndUnTouch)
+ {
+ timeToFill.add(t2);
+ step3ok = true;
+ }
+ else // sortie de la boucle de remontee
+ {
+ break;
+ }
+ }
+ }
+
+ if (!(step1ok && step2ok && step3ok))
+ {
+ timeToFill.clear();
+ }
+
+ g2.setColor(Color.red);
+ if (timeToFill.size() > 0)
+ nbEvent++;
+ total += timeToFill.size();
+
+ for (int i = 0; i < timeToFill.size(); i++)
+ {
+ int index = timeToFill.get(i);
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(index);
+ mouseBt2.isEscapingFromOtherAndUnTouch = true;
+
+ eventTimeLine.addPunctualEvent(index - firstFrame);
+
+ mouseARecord.get(index).mouseGetToOtherMouseAndOtherEscapeInOut = true;
+ }
+ t += timeToFill.size();
+ }
+
+ }
+ }
+
+ g2.setColor(Color.red);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ g2.drawLine(0, currentY + 1, imageChrono.getWidth(), currentY + 1);
+
+ String string = "Mouse A get to mouse B and B escape with threshold distance in and out : nbEvent : "
+ + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse B get to mouse A and A escape with threshold distance in and out
+
+ EventTimeLine eventTimeLine = new EventTimeLine("B get to A and A escape threshold in and out",
+ EventType.B_GOTO_A_AND_A_ESCAPE_THRESHOLD_IN_OUT, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ if (mouseB.isGettingToOtherAndTouch) // contact
+ {
+ ArrayList<Integer> timeToFill = new ArrayList<Integer>();
+ // loop forward to the contact.
+
+ boolean step1ok = false;
+ boolean step2ok = false;
+ boolean step3ok = false;
+
+ int seeker = t;
+
+ // STEP 1
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseBRecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
+ if (mouseBt2.isGettingToOtherAndTouch)
+ {
+ timeToFill.add(t2);
+ }
+ else // sortie de la boucle de remontee
+ {
+ step1ok = true;
+ break;
+ }
+ }
+ }
+
+ // STEP 2
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseBRecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
+ if (mouseBt2.distanceIsInferiorToThreshold1)
+ {
+ timeToFill.add(t2);
+ }
+ else // sortie de la boucle de remontee
+ {
+ step2ok = true;
+ break;
+ }
+ }
+ }
+
+ // STEP 3
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseARecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
+ if (mouseAt2.isEscapingFromOtherAndUnTouch)
+ {
+ timeToFill.add(t2);
+ step3ok = true;
+ }
+ else // sortie de la boucle de remontee
+ {
+ break;
+ }
+ }
+ }
+
+ if (!(step1ok && step2ok && step3ok))
+ {
+ timeToFill.clear();
+ }
+
+ g2.setColor(Color.green);
+ if (timeToFill.size() > 0)
+ nbEvent++;
+ total += timeToFill.size();
+
+ for (int i = 0; i < timeToFill.size(); i++)
+ {
+ int index = timeToFill.get(i);
+ MouseInfoRecord mouseAt2 = mouseARecord.get(index);
+ mouseAt2.isEscapingFromOtherAndUnTouch = true;
+
+ eventTimeLine.addPunctualEvent(index - firstFrame);
+
+ mouseBRecord.get(index).mouseGetToOtherMouseAndOtherEscapeInOut = true;
+ }
+ t += timeToFill.size();
+ }
+
+ }
+ }
+ g2.setColor(Color.green);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse B get to mouse A and A escape with threshold distance in and out : nbEvent : "
+ + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse A get to mouse B and A escape with threshold distance in and out.
+
+ EventTimeLine eventTimeLine = new EventTimeLine("A get to B and A escape threshold in and out",
+ EventType.A_GOTO_B_AND_A_ESCAPE_THRESHOLD_IN_OUT, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ if (mouseA.isGettingToOtherAndTouch) // contact
+ {
+ ArrayList<Integer> timeToFill = new ArrayList<Integer>();
+ // loop forward to the contact.
+
+ boolean step1ok = false;
+ boolean step2ok = false;
+ boolean step3ok = false;
+
+ int seeker = t;
+
+ // STEP 1
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseARecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
+ if (mouseAt2.isGettingToOtherAndTouch)
+ {
+ timeToFill.add(t2);
+ step1ok = true; // maintenant ici
+ }
+ else // sortie de la boucle de remontee
+ {
+ // step1ok = true; avant la
+ break;
+ }
+ }
+ }
+
+ // STEP 2
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseARecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
+ if (mouseAt2.distanceIsInferiorToThreshold1)
+ {
+ timeToFill.add(t2);
+ step2ok = true; // mainetnant ici
+ }
+ else // sortie de la boucle de remontee
+ {
+ // step2ok = true; avant la
+ break;
+ }
+ }
+ }
+
+ // STEP 3
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseARecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseAt2 = mouseARecord.get(t2);
+ if (mouseAt2.isEscapingFromOtherAndUnTouch)
+ {
+ timeToFill.add(t2);
+ step3ok = true;
+ }
+ else // sortie de la boucle de remontee
+ {
+ break;
+ }
+ }
+ }
+
+ if (!(step1ok && step2ok && step3ok))
+ {
+ timeToFill.clear();
+ }
+
+ g2.setColor(Color.red);
+ if (timeToFill.size() > 0)
+ nbEvent++;
+ total += timeToFill.size();
+ for (int i = 0; i < timeToFill.size(); i++)
+ {
+ int index = timeToFill.get(i);
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(index);
+ mouseBt2.isEscapingFromOtherAndUnTouch = true;
+
+ eventTimeLine.addPunctualEvent(index - firstFrame);
+
+ mouseARecord.get(index).mouseGetToOtherMouseAndEscapeInOut = true;
+ }
+ t += timeToFill.size();
+ }
+
+ }
+ }
+ g2.setColor(Color.red);
+
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ g2.drawLine(0, currentY + 1, imageChrono.getWidth(), currentY + 1);
+ String string = "Mouse A get to mouse B and A escape with threshold distance in and out : nbEvent : "
+ + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ {
+ // Mouse B get to mouse A and B escape with threshold distance in and out
+
+ EventTimeLine eventTimeLine = new EventTimeLine("B get to A and B escape threshold in and out",
+ EventType.B_GOTO_A_AND_B_ESCAPE_THRESHOLD_IN_OUT, TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ if (mouseB.isGettingToOtherAndTouch) // contact
+ {
+ ArrayList<Integer> timeToFill = new ArrayList<Integer>();
+ // loop forward to the contact.
+
+ boolean step1ok = false;
+ boolean step2ok = false;
+ boolean step3ok = false;
+
+ int seeker = t;
+
+ // STEP 1
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseBRecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
+ if (mouseBt2.isGettingToOtherAndTouch)
+ {
+ timeToFill.add(t2);
+ step1ok = true; // maintenant ici
+ }
+ else // sortie de la boucle de remontee
+ {
+ // avant ici step1ok = true;
+ break;
+ }
+ }
+ }
+
+ // STEP 2
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseBRecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
+ if (mouseBt2.distanceIsInferiorToThreshold1)
+ {
+ timeToFill.add(t2);
+ step2ok = true; // mis ici
+ }
+ else // sortie de la boucle de remontee
+ {
+ // step2ok = true; avant ici
+ break;
+ }
+ }
+ }
+
+ // STEP 3
+
+ for (int t2 = seeker; t2 < tMax; t2++)
+ {
+ seeker = t2;
+ if (mouseBRecord.containsKey(t2))
+ {
+ MouseInfoRecord mouseBt2 = mouseBRecord.get(t2);
+ if (mouseBt2.isEscapingFromOtherAndUnTouch)
+ {
+ timeToFill.add(t2);
+ step3ok = true;
+ }
+ else // sortie de la boucle de remontee
+ {
+ break;
+ }
+ }
+ }
+
+ if (!(step1ok && step2ok && step3ok))
+ {
+ timeToFill.clear();
+ }
+
+ g2.setColor(Color.green);
+ if (timeToFill.size() > 0)
+ nbEvent++;
+ total += timeToFill.size();
+
+ for (int i = 0; i < timeToFill.size(); i++)
+ {
+ int index = timeToFill.get(i);
+ MouseInfoRecord mouseAt2 = mouseARecord.get(index);
+ mouseAt2.isEscapingFromOtherAndUnTouch = true;
+ eventTimeLine.addPunctualEvent(index - firstFrame);
+
+ mouseBRecord.get(index).mouseGetToOtherMouseAndEscapeInOut = true;
+ }
+ t += timeToFill.size();
+
+ }
+
+ }
+ }
+ g2.setColor(Color.green);
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse B get to mouse A and B escape with threshold distance in and out : nbEvent : "
+ + nbEvent + " total: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+
+ {
+ // Event de poursuite.
+ // A Poursuit B
+ // =
+ // A est en mouvement
+ // B est en mouvement
+ // A est derriere B ou A est sur le cote de B
+ // Distance A-B inferieure a Threshold 2 ( le plus loin )
+
+ EventTimeLine eventTimeLine = new EventTimeLine("A follow B", EventType.A_FOLLOW_B,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventCriteria currentCriteria = null;
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceHeadABodyB = mouseA.headPosition.distanceSq(mouseB.bodyPosition);
+ double distanceHeadAHeadB = mouseA.headPosition.distanceSq(mouseB.headPosition);
+ double distanceBodyABodyB = mouseA.bodyPosition.distanceSq(mouseB.bodyPosition);
+ double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq(mouseB.headPosition);
+
+ if (mouseB.distanceIsInferiorToThreshold2 // moins precis mais moins de bruit
+
+ && mouseA.speed > SPEED_THRESHOLD_2 && mouseB.speed > SPEED_THRESHOLD_2
+ && (mouseA.isBehindTheOther || mouseA.isBesideTheOther)
+
+ ) // contact threshold 2
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+
+ }
+
+ }
+ }
+ // filter results
+
+ eventTimeLine.removeEventLessThanLength(3);
+
+ g2.setColor(Color.RED);
+ // display result.
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse A poursuit B : nbEvent : " + nbEvent + " total time: " + total / FPS + "s";
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+
+ {
+ // A est derriere B et B est derriere A
+ // A est à l'arret et B est à l'arret
+ // distance superieure a Threshold 2
+ // back to back
+ // angle formé inferieur a ANGLE dans le code ( 0.52d Rad )
+
+ EventTimeLine eventTimeLine = new EventTimeLine("back to back", EventType.A_BEHIND_B_AND_B_BEHIND_A,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventCriteria currentCriteria = null;
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceHeadABodyB = mouseA.headPosition.distanceSq(mouseB.bodyPosition);
+ double distanceHeadAHeadB = mouseA.headPosition.distanceSq(mouseB.headPosition);
+ double distanceBodyABodyB = mouseA.bodyPosition.distanceSq(mouseB.bodyPosition);
+ double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq(mouseB.headPosition);
+
+ double VAx = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
+ double VAy = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
+ double angleA = Math.atan2(VAy, VAx);
+
+ double VBx = mouseB.headPosition.getX() - mouseB.bodyPosition.getX();
+ double VBy = mouseB.headPosition.getY() - mouseB.bodyPosition.getY();
+ double angleB = Math.atan2(VBy, VBx);
+
+ // angle fait par le segment qui va de la souris A a la souris B.
+
+ double VABx = mouseB.bodyPosition.getX() - mouseA.bodyPosition.getX();
+ double VABy = mouseB.bodyPosition.getY() - mouseA.bodyPosition.getY();
+ double angleAB = Math.atan2(VABy, VABx);
+
+ angleB = angleB - Math.PI;
+
+ // on recale les angles pour les rendres comparables
+
+ // recherche de la plus petite difference entre les angles.
+
+ double minAngle = Double.MAX_VALUE;
+ for (double a = -4; a < 5; a++)
+ {
+ double testVal = Math.abs(angleB + 2 * Math.PI * a - angleA);
+ if (testVal < minAngle)
+ minAngle = testVal;
+ }
+
+ double minAngleABwithA = Double.MAX_VALUE;
+ for (double a = -4; a < 5; a++)
+ {
+ double testVal = Math.abs(angleA + Math.PI * a - angleAB);
+ if (testVal < minAngleABwithA)
+ minAngleABwithA = testVal;
+ }
+
+ double minAngleABwithB = Double.MAX_VALUE;
+ for (double a = -4; a < 5; a++)
+ {
+ double testVal = Math.abs(angleB + Math.PI * a - angleAB);
+ if (testVal < minAngleABwithB)
+ minAngleABwithB = testVal;
+ }
+
+ if (mouseA.speed < SPEED_THRESHOLD_1 && mouseB.speed < SPEED_THRESHOLD_1)
+ if (!mouseA.distanceIsInferiorToThreshold2) // distance > Threshold 2
+ if (minAngle < 0.52d && mouseA.isBehindTheOther && mouseB.isBehindTheOther) // && !mouseA.distanceIsInferiorToThreshold1 )
+ // // premier argument trouve angle opposé et
+ // l'autre force culcul
+ if (minAngleABwithA < 0.52d)
+ if (minAngleABwithB < 0.52d)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+ }
+
+ }
+ }
+ // filter results
+
+ eventTimeLine.removeEventLessThanLength(3);
+
+ g2.setColor(Color.gray);
+ // display result.
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Back to back: nbEvent : " + nbEvent + " total time: " + total / FPS + "s";
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+ }
+
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+
+ // A regarde l'autre souris
+ //
+ {
+ EventTimeLine eventTimeLine = new EventTimeLine("A can see B", EventType.A_CAN_SEE_B,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventCriteria currentCriteria = null;
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ // ---------------------
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceHeadABodyB = mouseA.headPosition.distanceSq(mouseB.bodyPosition);
+ double distanceHeadAHeadB = mouseA.headPosition.distanceSq(mouseB.headPosition);
+ double distanceBodyABodyB = mouseA.bodyPosition.distanceSq(mouseB.bodyPosition);
+ double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq(mouseB.headPosition);
+
+ double VAx = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
+ double VAy = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
+ double angleA = Math.atan2(VAy, VAx);
+
+ // teste A dans la vue.
+
+ double VABx = mouseA.headPosition.getX() - mouseB.headPosition.getX();
+ double VABy = mouseA.headPosition.getY() - mouseB.headPosition.getY();
+ double angleBA = Math.atan2(VABy, VABx) + Math.PI;
+
+ boolean eventIsOk = true;
+
+ // if ( angleMin( angleBA , angleB ) < Math.PI / 2f )
+ if (angleMin(angleBA, angleA) < demiVisionDeSouris)
+ {
+ // eventTimeLine.addPunctualEvent(t - firstFrame );
+ }
+ else
+ {
+ eventIsOk = false;
+ }
+
+ if (mouseA.distanceIsInferiorToThreshold2)
+ {
+ eventIsOk = false;
+ }
+ // ------------------------
+ // flag l'event s'il est bon.
+ if (eventIsOk)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+ }
+
+ }
+ }
+ // filter results
+
+ eventTimeLine.removeEventLessThanLength(3);
+
+ g2.setColor(Color.RED);
+ // display result.
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse A can see B: nbEvent : " + nbEvent + " total time: " + total / FPS + "s";
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+
+ }
+
+ // B regarde l'autre souris
+ //
+ {
+ EventTimeLine eventTimeLine = new EventTimeLine("B can see A", EventType.B_CAN_SEE_A,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(eventTimeLine);
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+
+ EventCriteria currentCriteria = null;
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceHeadABodyB = mouseA.headPosition.distanceSq(mouseB.bodyPosition);
+ double distanceHeadAHeadB = mouseA.headPosition.distanceSq(mouseB.headPosition);
+ double distanceBodyABodyB = mouseA.bodyPosition.distanceSq(mouseB.bodyPosition);
+ double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq(mouseB.headPosition);
+
+ double VBx = mouseB.headPosition.getX() - mouseB.bodyPosition.getX();
+ double VBy = mouseB.headPosition.getY() - mouseB.bodyPosition.getY();
+ double angleB = Math.atan2(VBy, VBx);
+
+ // teste A dans la vue.
+
+ double VBAx = mouseB.headPosition.getX() - mouseA.headPosition.getX();
+ double VBAy = mouseB.headPosition.getY() - mouseA.headPosition.getY();
+ double angleBA = Math.atan2(VBAy, VBAx) + Math.PI;
+
+ boolean eventIsOk = true;
+
+ if (angleMin(angleBA, angleB) < demiVisionDeSouris)
+ {
+
+ }
+ else
+ {
+ eventIsOk = false;
+ }
+
+ // flag l'event s'il est bon.
+ if (eventIsOk)
+ {
+ eventTimeLine.addPunctualEvent(t - firstFrame);
+ }
+
+ }
+ }
+ // filter results
+
+ eventTimeLine.removeEventLessThanLength(3);
+
+ g2.setColor(Color.GREEN);
+ // display result.
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = "Mouse B can see A: nbEvent : " + nbEvent + " total time: " + total / FPS + "s";
+ g2.drawString(string, 0, currentY + 12);
+ imageComponent.stringList.add(string);
+
+ currentY += stepY;
+
+ }
+
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+
+ currentY = loadExtraLabelXMLFile(file, currentY, g2);
+ currentY = loadExtraLabelAviSoftTXTFile(file, currentY, g2);
+
+ Icy.getMainInterface().getSwimmingPool().add(swimmingObject);
+
+ }
+
+ private File getExtraXMLFile(File originalFile)
+ {
+ File extraFile = new File(FileUtil.setExtension(file.getAbsolutePath(), ".extra.xml"));
+ return extraFile;
+ }
+
+ private File getExtraAviSoftTXTFile(File originalFile)
+ {
+ File extraFile = new File(FileUtil.setExtension(file.getAbsolutePath(), ".avisoft.txt"));
+ return extraFile;
+ }
+
+ private File getExtraAviSoftXLSFile(File originalFile)
+ {
+ File extraFile = new File(FileUtil.setExtension(file.getAbsolutePath(), ".avisoft.xls"));
+ return extraFile;
+ }
+
+ private int getNbExtraEvent(File originalFile)
+ {
+
+ int nbExtraEvent = 0;
+
+ {
+ File extraFile = getExtraXMLFile(originalFile);
+ if (extraFile.exists())
+ {
+
+ Document xmlDocument = XMLUtil.loadDocument(extraFile);
+ ArrayList<Element> labelElementList = XMLUtil.getElements(XMLUtil.getRootElement(xmlDocument),
+ "LABEL");
+
+ System.out.println("Number of extra user labels (XML): " + labelElementList.size());
+
+ nbExtraEvent += labelElementList.size();
+
+ }
+ }
+
+ {
+ File extraFile = getExtraAviSoftTXTFile(originalFile);
+ if (extraFile.exists())
+ {
+ // nlabel type duration interval starttime endtime pstart_time pstart pstart_ampl pend_time pend pend_ampl pmin_time pmin pmin_ampl
+ // pmax_time pmax pmax_ampl
+
+ // Pattern pattern = Pattern.compile("(\t)(.*?)(\t)"); // finds string between tabs.
+ int nbElement = 0;
+
+ HashMap<String, Integer> eventFoundHashMap = new HashMap<String, Integer>();
+
+ try
+ {
+
+ Scanner scanner = new Scanner(extraFile);
+
+ while (scanner.hasNextLine())
+ {
+ int line = scanner.nextInt();
+ String labelName = scanner.next();
+
+ // if ( labelName == null ) continue;
+
+ int nbLabelWithThisName = 0;
+ if (eventFoundHashMap.containsKey(labelName))
+ {
+ nbLabelWithThisName = eventFoundHashMap.get(labelName);
+ }
+ eventFoundHashMap.put(labelName, nbLabelWithThisName + 1);
+
+ scanner.nextLine();
+ }
+
+ for (String labelName : eventFoundHashMap.keySet())
+ {
+ System.out.println("Label Name : " + labelName + " #" + eventFoundHashMap.get(labelName));
+ }
+
+ nbElement += eventFoundHashMap.keySet().size();
+
+ }
+ catch (FileNotFoundException e)
+ {
+ e.printStackTrace();
+ }
+
+ System.out.println("Number of extra user labels (AviSoft TXT): " + nbElement);
+
+ nbExtraEvent += nbElement;
+ }
+ }
+
+ {
+ File extraFile = getExtraAviSoftXLSFile(originalFile);
+ if (extraFile.exists())
+ {
+ // nlabel type duration interval starttime
+
+ // Pattern pattern = Pattern.compile("(\t)(.*?)(\t)"); // finds string between tabs.
+ int nbElement = 0;
+
+ HashMap<String, Integer> eventFoundHashMap = new HashMap<String, Integer>();
+
+ try
+ {
+
+ Workbook workbook = Workbook.getWorkbook(extraFile);
+
+ Sheet sheet = workbook.getSheet(0);
+ int nbRow = sheet.getRows();
+ System.out.println("Number of row in excel file: " + nbRow);
+
+ int row = 1;
+ while (row < nbRow)
+ {
+ String labelName = sheet.getCell(1, row).getContents();
+
+ int nbLabelWithThisName = 0;
+ if (eventFoundHashMap.containsKey(labelName))
+ {
+ nbLabelWithThisName = eventFoundHashMap.get(labelName);
+ }
+ eventFoundHashMap.put(labelName, nbLabelWithThisName + 1);
+
+ row++;
+ }
+
+ for (String labelName : eventFoundHashMap.keySet())
+ {
+ System.out.println("Label Name : " + labelName + " #" + eventFoundHashMap.get(labelName));
+ }
+
+ nbElement += eventFoundHashMap.keySet().size();
+
+ }
+ catch (FileNotFoundException e)
+ {
+ e.printStackTrace();
+ }
+ catch (BiffException e)
+ {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
+ catch (IOException e)
+ {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
+
+ System.out.println("Number of extra user labels (AviSoft XLS): " + nbElement);
+
+ nbExtraEvent += nbElement;
+ }
+ }
+
+ return nbExtraEvent;
+ }
+
+ private int loadExtraLabelAviSoftTXTFile(File originalFile, int currentY, Graphics2D g2)
+ {
+
+ File extraFile = getExtraAviSoftTXTFile(originalFile);
+ if (extraFile.exists())
+ {
+ // nlabel type duration interval starttime endtime pstart_time pstart pstart_ampl pend_time pend pend_ampl pmin_time pmin pmin_ampl pmax_time
+ // pmax pmax_ampl
+
+ // Pattern pattern = Pattern.compile("(\t)(.*?)(\t)"); // finds string between tabs.
+ int nbElement = 0;
+
+ HashMap<String, EventTimeLine> eventTimeLineHashMap = new HashMap<String, EventTimeLine>();
+ /*
+ * EventTimeLine userEvent = new EventTimeLine( userLabelName ,
+ * EventType.USER_EVENT , TimeLineCategory.USE_BOOLEAN_EVENT );
+ * animal.eventTimeLineList.add( userEvent );
+ */
+
+ try
+ {
+
+ loadDefaultUserEventSet(eventTimeLineHashMap, originalFile);
+
+ Scanner scanner = new Scanner(extraFile);
+
+ while (scanner.hasNextLine())
+ {
+ int lineNumber = scanner.nextInt(); // scan line number
+ System.out.println("next line number : " + lineNumber);
+
+ String labelName = scanner.next();
+
+ /*
+ * int nbLabelWithThisName = 0;
+ * if ( eventFoundHashMap.containsKey( labelName ) )
+ * {
+ * nbLabelWithThisName = eventFoundHashMap.get( labelName );
+ * }
+ * eventFoundHashMap.put( labelName , nbLabelWithThisName+1 );
+ */
+ // System.out.print( "label name: " + labelName + ":");
+ EventTimeLine userEvent = null;
+ // for ( String keyString : eventTimeLineHashMap.keySet() )
+ // {
+ // if ( keyString.equals( labelName ) )
+ // {
+ // userEvent = eventTimeLineHashMap.get( labelName );
+ // //System.out.print( ":found:");
+ // break;
+ // }
+ // }
+ if (eventTimeLineHashMap.containsKey(labelName)) // retreive EventTimeLine
+ {
+ userEvent = eventTimeLineHashMap.get(labelName);
+ }
+ else
+
+ // if (userEvent == null ) // means it was not found in keyset.
+ { // creates a new eventTimeLine for this label.
+ userEvent = new EventTimeLine(labelName, EventType.USER_EVENT,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ eventTimeLineHashMap.put(labelName, userEvent);
+ animal.eventTimeLineList.add(userEvent);
+ }
+
+ float duration = scanner.nextFloat();
+ float interval = scanner.nextFloat();
+ float startTime = scanner.nextFloat();
+
+ int durationInFrame = (int) (FPS * duration);
+ int startTimeInFrame = (int) (FPS * startTime);
+
+ // System.out.println( "line: " + line + " l:" + labelName + " s:" + startTime + " d:" + duration );
+
+ for (int t = startTimeInFrame; t <= startTimeInFrame + durationInFrame; t++)
+ {
+ userEvent.addPunctualEvent(t - firstFrame);
+ // System.out.print("a");
+ }
+ // System.out.println( "");
+ if (scanner.hasNextLine()) // flush what remains in this line.
+ {
+ scanner.nextLine();
+ }
+ }
+
+ scanner.close();
+
+ // display label found
+ ArrayList keys = new ArrayList(eventTimeLineHashMap.keySet());
+ Collections.sort(keys);
+ // for ( EventTimeLine eventTimeLine : eventTimeLineHashMap.values() )
+ // for ( Object key : keys )
+ for (int iTimeLine = 29; iTimeLine < animal.eventTimeLineList.size(); iTimeLine++)
+ {
+ // EventTimeLine eventTimeLine = eventTimeLineHashMap.get( key );
+ EventTimeLine eventTimeLine = animal.eventTimeLineList.get(iTimeLine);
+ // EventTimeLine eventTimeLine = eventTimeLineHashMap.get( eventTimeLineString );
+ System.out.println("Processing eventTimeLine... " + eventTimeLine.criteriaName + " nb event : "
+ + eventTimeLine.eventList.size());
+ nbElement++;
+
+ int nbEvent = 0;
+ int total = 0;
+ // draw result
+ g2.setColor(Color.BLUE);
+ for (EventCriteria eventCriteria : eventTimeLine.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.BLACK);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = eventTimeLine.criteriaName + " nb event: " + nbEvent + " totalT: "
+ + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+
+ currentY += stepY;
+
+ imageComponent.stringList.add(string);
+
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+
+ }
+
+ }
+ catch (FileNotFoundException e)
+ {
+ e.printStackTrace();
+ }
+
+ System.out.println("Number of extra user labels (AviSoft): " + nbElement);
+
+ }
+
+ return currentY;
+
+ }
+
+ /**
+ * Loads a number of default user event set to force their presence in the list, and in a specific order.
+ * Then those events can be compared in the label analyser as they appear at the same line index event.
+ * (event 29 will be always the same)
+ * Loads the file in the folder call defaultUserEvents.txt
+ * Example of what it can contain:
+ * s
+ * f
+ * u
+ * d
+ * mo
+ * c
+ * j1
+ * j2
+ * mi
+ * n
+ * o
+ *
+ * @param eventTimeLineHashMap
+ * @param originalFile
+ */
+ private void loadDefaultUserEventSet(HashMap<String, EventTimeLine> eventTimeLineHashMap, File originalFile)
+ {
+
+ File defaultUserEventSetFile = new File(
+ FileUtil.getDirectory(originalFile.getAbsolutePath()) + "//defaultUserEvents.txt");
+
+ System.out.println("DefaultUserEventFile is: " + defaultUserEventSetFile.getAbsolutePath());
+
+ if (FileUtil.exists(defaultUserEventSetFile.getAbsolutePath()))
+ {
+ System.out.println("Loading default User events...");
+
+ try
+ {
+ Scanner scanner = new Scanner(defaultUserEventSetFile);
+
+ while (scanner.hasNextLine())
+ {
+ String labelName = scanner.nextLine();
+ System.out.println(labelName);
+ EventTimeLine userEvent = new EventTimeLine(labelName, EventType.USER_EVENT,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ eventTimeLineHashMap.put(labelName, userEvent);
+ animal.eventTimeLineList.add(userEvent);
+ }
+
+ scanner.close();
+
+ }
+ catch (FileNotFoundException e)
+ {
+ e.printStackTrace();
+ }
+
+ }
+
+ /*
+ * String labelName = "";
+ * EventTimeLine userEvent = new EventTimeLine( labelName ,
+ * EventType.USER_EVENT , TimeLineCategory.USE_BOOLEAN_EVENT );
+ * eventTimeLineHashMap.put( labelName, userEvent );
+ * animal.eventTimeLineList.add( userEvent );
+ */
+
+ }
+
+ private int loadExtraLabelXMLFile(File originalFile, int currentY, Graphics2D g2)
+ {
+
+ // load labels generated by user ( file extra.xml )
+ File extraFile = getExtraXMLFile(originalFile);
+
+ System.out.println("XML file is: " + file.getAbsolutePath());
+ System.out.println("Extra XML file is: " + extraFile.getAbsolutePath());
+
+ if (!extraFile.exists())
+ return currentY;
+
+ System.out.println("The extra info file exists... Processing...");
+
+ Document xmlDocument = XMLUtil.loadDocument(extraFile);
+
+ /** offset to shit in time the incoming labels, in order to sync them if needed. */
+ int offset = 0;
+
+ ArrayList<Element> labelElementListOffset = XMLUtil.getElements(XMLUtil.getRootElement(xmlDocument),
+ "OFFSET");
+ for (Element labelElement : labelElementListOffset)
+ {
+ offset = XMLUtil.getAttributeIntValue(labelElement, "offset", 0);
+ }
+
+ /** min duration event */
+ int minDurationEvent = 0;
+
+ ArrayList<Element> labelElementListMinDuration = XMLUtil.getElements(XMLUtil.getRootElement(xmlDocument),
+ "MINDURATION");
+ for (Element labelElement : labelElementListMinDuration)
+ {
+ minDurationEvent = XMLUtil.getAttributeIntValue(labelElement, "minduration", 0);
+ }
+
+ ArrayList<Element> labelElementList = XMLUtil.getElements(XMLUtil.getRootElement(xmlDocument), "LABEL");
+
+ for (Element labelElement : labelElementList)
+ {
+
+ String userLabelName = XMLUtil.getAttributeValue(labelElement, "name", "no name");
+ String userLabelColorString = XMLUtil.getAttributeValue(labelElement, "color", "green");
+
+ System.out.println("Loading label " + userLabelName);
+
+ Color userEventColor = null;
+ try
+ {
+ Field field = Class.forName("java.awt.Color").getField(userLabelColorString);
+ userEventColor = (Color) field.get(null);
+ }
+ catch (Exception e)
+ {
+ userEventColor = Color.green; // Not defined
+ System.err.println("Unsupported color in label " + userLabelName + " (switching to green)");
+ }
+
+ // create node
+
+ int nbEvent = 0;
+ int total = 0;
+
+ EventTimeLine userEvent = new EventTimeLine(userLabelName, EventType.USER_EVENT,
+ TimeLineCategory.USE_BOOLEAN_EVENT);
+ animal.eventTimeLineList.add(userEvent);
+
+ synchronizeAllAnimalEvent(userEvent);
+
+ g2.setColor(userEventColor);
+
+ // read events.
+ ArrayList<Element> labelEventList = XMLUtil.getElements(labelElement, "EVENT");
+
+ for (Element labelEvent : labelEventList)
+ {
+ int start = XMLUtil.getAttributeIntValue(labelEvent, "start", -1);
+ int end = XMLUtil.getAttributeIntValue(labelEvent, "end", -1);
+
+ if (start == -1)
+ {
+ System.err.println("Error in label " + userLabelName);
+ System.err.println("Wrong start value (skipping event)");
+ continue;
+ }
+
+ if (end == -1)
+ {
+ System.err.println("Error in label " + userLabelName);
+ System.err.println("Wrong end value (skipping event)");
+ continue;
+ }
+
+ if (start > end)
+ {
+ System.err.println("Error in label " + userLabelName);
+ System.err.println("start value > end value (skipping event)");
+ continue;
+ }
+
+ start += offset;
+ end += offset;
+
+ // check minduration event: if the event is smaller than mindurationevent, create an event of the correct length from start.
+
+ if (end - start < minDurationEvent)
+ {
+ end = start + minDurationEvent;
+ }
+
+ for (int t = start; t <= end; t++)
+ {
+ userEvent.addPunctualEvent(t - firstFrame);
+ }
+ }
+
+ nbEvent = 0;
+ total = 0;
+ // draw result
+ for (EventCriteria eventCriteria : userEvent.eventList)
+ {
+ nbEvent++;
+ total += eventCriteria.getLength();
+ for (int i = eventCriteria.startFrame; i <= eventCriteria.endFrame; i++)
+ {
+ g2.drawLine(i, currentY, i, currentY + stepY);
+ }
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ String string = userLabelName + nbEvent + " totalT: " + nbFrameToDisplayInSecond(total);
+ g2.drawString(string, 0, currentY + 12);
+
+ currentY += stepY;
+
+ imageComponent.stringList.add(string);
+
+ g2.drawLine(0, currentY, imageChrono.getWidth(), currentY);
+ }
+
+ System.out.println("Custom XML user label loaded.");
+
+ return currentY;
+ }
+
+ /**
+ * This function ensure that all the events are loaded the same way for all animals,
+ * and even resort them, in order to have the exact same list (and same order) of event for all animals
+ *
+ * @param userEvent
+ */
+ private void synchronizeAllAnimalEvent(EventTimeLine userEvent)
+ {
+
+ // TODO
+
+ ArrayList<Animal> animalList = new ArrayList<Animal>();
+ for (VideoLabelPanel videoLabelPanel : videoLabelPanelArrayList)
+ {
+ animalList.add(videoLabelPanel.animal);
+ }
+
+ }
+
+ float getMin(float a, float b)
+ {
+ if (a < b)
+ return a;
+ return b;
+ }
+
+ public void loadXML(File currentFile)
+ {
+
+ System.out.println("Loading document");
+
+ // LOAD DOCUMENT
+
+ mouseARecord.clear();
+ mouseBRecord.clear();
+
+ File XMLFile = currentFile;
+ if (!XMLFile.exists())
+ return;
+
+ Document XMLDocument = XMLUtil.loadDocument(XMLFile);
+
+ XPath xpath = XPathFactory.newInstance().newXPath();
+
+ // VIDEO FILE NAME LOAD
+
+ {
+ String expression = "//FILENAME";
+ NodeList nodes;
+ try
+ {
+ nodes = (NodeList) xpath.evaluate(expression, XMLDocument, XPathConstants.NODESET);
+
+ // System.out.println( "node size : " + nodes.getLength() );
+
+ Element fileNode = (Element) nodes.item(0);
+ System.out.println("Video file is :" + fileNode.getTextContent());
+ videoFile = new File(fileNode.getTextContent());
+
+ }
+ catch (XPathExpressionException e)
+ {
+
+ e.printStackTrace();
+ }
+ }
+
+ // MOUSE A LOAD
+
+ // float startFrame = Float.parseFloat( loadFrameStartTextField.getText() );
+ // float endFrame = Float.parseFloat( loadFrameEndTextField.getText() );
+
+ float startFrame = 0;
+ float endFrame = Float.MAX_VALUE;
+
+ {
+
+ String expression = "//MOUSEA/DET";
+ NodeList nodes;
+ try
+ {
+ nodes = (NodeList) xpath.evaluate(expression, XMLDocument, XPathConstants.NODESET);
+
+ // System.out.println( "mouse A node size : " + nodes.getLength() );
+
+ for (int i = 0; i < nodes.getLength(); i++)
+ {
+ Element detNode = (Element) nodes.item(i);
+
+ MouseInfoRecord mouseInfoRecord = new MouseInfoRecord();
+ mouseInfoRecord.bodyPosition = new Point2D.Float(
+ Float.parseFloat(detNode.getAttribute("bodyx")),
+ Float.parseFloat(detNode.getAttribute("bodyy")));
+ mouseInfoRecord.headPosition = new Point2D.Float(
+ Float.parseFloat(detNode.getAttribute("headx")),
+ Float.parseFloat(detNode.getAttribute("heady")));
+ mouseInfoRecord.tailPosition = new Point2D.Float(
+ Float.parseFloat(detNode.getAttribute("tailx")),
+ Float.parseFloat(detNode.getAttribute("taily")));
+
+ int currentT = Integer.parseInt(detNode.getAttribute("t"));
+ if (currentT >= startFrame && currentT <= endFrame)
+ {
+ // System.out.println("Mouse A adding record at t " + currentT );
+ mouseARecord.put(currentT, mouseInfoRecord);
+ }
+
+ }
+
+ }
+ catch (XPathExpressionException e)
+ {
+
+ e.printStackTrace();
+ }
+ }
+
+ // MOUSE B LOAD
+
+ {
+ String expression = "//MOUSEB/DET";
+ NodeList nodes;
+ try
+ {
+ nodes = (NodeList) xpath.evaluate(expression, XMLDocument, XPathConstants.NODESET);
+
+ // System.out.println( "mouse B node size : " + nodes.getLength() );
+
+ for (int i = 0; i < nodes.getLength(); i++)
+ {
+ Element detNode = (Element) nodes.item(i);
+
+ MouseInfoRecord mouseInfoRecord = new MouseInfoRecord();
+ mouseInfoRecord.bodyPosition = new Point2D.Float(
+ Float.parseFloat(detNode.getAttribute("bodyx")),
+ Float.parseFloat(detNode.getAttribute("bodyy")));
+ mouseInfoRecord.headPosition = new Point2D.Float(
+ Float.parseFloat(detNode.getAttribute("headx")),
+ Float.parseFloat(detNode.getAttribute("heady")));
+ mouseInfoRecord.tailPosition = new Point2D.Float(
+ Float.parseFloat(detNode.getAttribute("tailx")),
+ Float.parseFloat(detNode.getAttribute("taily")));
+
+ int currentT = Integer.parseInt(detNode.getAttribute("t"));
+ if (currentT >= startFrame && currentT <= endFrame)
+ {
+
+ // System.out.println("Mouse B adding record at t " + currentT );
+
+ mouseBRecord.put(currentT, mouseInfoRecord);
+ }
+
+ }
+
+ }
+ catch (XPathExpressionException e)
+ {
+
+ e.printStackTrace();
+ }
+ }
+
+ startOffset = trimAnalysisRecord();
+
+ }
+
+ /** Time in frame before the first analysis. Used to offset the video sequence. **/
+ int startOffset = 0;
+
+ double only2digit(double val)
+ {
+ val *= 100;
+ val = Math.floor(val);
+ val /= 100f;
+ return val;
+ }
+
+ void computeVisionGraph(VisionGraph visionGraph)
+ {
+ // --------------------------------
+ // A regarde l'autre souris ( non event / graph de vue )
+ {
+
+ float nbVal = 0;
+ float totalDistance = 0;
+ float nbEvent = 0;
+ float total = 0;
+
+ int tabAngle[] = new int[361];
+ int graphNumber = 0;
+
+ int binSize = 5;
+
+ EventCriteria currentCriteria = null;
+
+ int tMin = Integer.MAX_VALUE;
+ int tMax = 0;
+ {
+ Iterator<Integer> integerIterator = mouseARecord.keySet().iterator();
+ while (integerIterator.hasNext())
+ {
+ int val = integerIterator.next();
+ if (val > tMax)
+ tMax = val;
+ if (val < tMin)
+ tMin = val;
+ }
+ }
+
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseARecord.containsKey(t))
+ if (mouseBRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+
+ double distanceHeadABodyB = mouseA.headPosition.distanceSq(mouseB.bodyPosition);
+ double distanceHeadAHeadB = mouseA.headPosition.distanceSq(mouseB.headPosition);
+ double distanceBodyABodyB = mouseA.bodyPosition.distanceSq(mouseB.bodyPosition);
+ double distanceBodyAHeadB = mouseA.bodyPosition.distanceSq(mouseB.headPosition);
+
+ double VAx = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
+ double VAy = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
+ double angleA = Math.atan2(VAy, VAx);
+
+ // teste A dans la vue.
+
+ double VABx = -mouseA.headPosition.getX() + mouseB.headPosition.getX();
+ double VABy = -mouseA.headPosition.getY() + mouseB.headPosition.getY();
+ double angleBA = Math.atan2(VABy, VABx); // + Math.PI;
+
+ boolean eventIsOk = true;
+
+ if (angleMin(angleBA, angleA) < demiVisionDeSouris)
+ {
+
+ }
+ else
+ {
+ eventIsOk = false;
+ }
+
+ if (visionGraph == VisionGraph.AT_FOLLOW_STATE)
+ {
+ // CRITERE EN POURSUITE
+ if (
+
+ (mouseA.distanceIsInferiorToThreshold2) || (!mouseA.isGettingToOtherAndTouch))
+ {
+ eventIsOk = false;
+ }
+ }
+
+ if (visionGraph == VisionGraph.AT_STOP_STATE)
+ {
+ if (
+ // CRITERE EN OBSERVATION A L ARRET
+
+ (mouseA.distanceIsInferiorToThreshold1) || (mouseA.speed > SPEED_THRESHOLD_1))
+
+ {
+ eventIsOk = false;
+ }
+ }
+
+ if (eventIsOk)
+ {
+
+ double angleSouris = angleA;
+ double angleVision = angleBA;
+
+ angleVision = angleVision - angleSouris;
+
+ int angleVisionDeg = (int) (180d * angleVision / Math.PI);
+
+ while (angleVisionDeg > 180)
+ angleVisionDeg -= 360;
+ while (angleVisionDeg < -180)
+ angleVisionDeg += 360;
+
+ int angleToFill = binSize * ((int) angleVisionDeg / binSize);
+
+ tabAngle[180 + angleToFill]++;
+
+ }
+
+ }
+ }
+
+ // Graph de placement de I dans la vue de R.
+ {
+
+ XlsManager xls = null;
+ File xlsFile = new File(System.getProperty("user.home") + "\\" + visionGraph.toString() + " "
+ + animal.animalName + ".xls");
+ try
+ {
+ xls = new XlsManager(xlsFile);
+ }
+ catch (IOException e)
+ {
+
+ e.printStackTrace();
+ }
+
+ xls.createNewPage("result");
+
+ // Generation du graph de vue de la residente.
+
+ JFreeChart chart;
+ XYSeriesCollection xyDataset = new XYSeriesCollection();
+ YIntervalSeriesCollection yintervalseriescollection = new YIntervalSeriesCollection();
+ IcyFrame graphFrame = new IcyFrame("graph " + graphNumber + " " + animal.animalName, true, true,
+ true, true);
+ graphNumber++;
+
+ chart = ChartFactory.createXYLineChart("", "angle", "y", xyDataset, PlotOrientation.VERTICAL, true,
+ false, false);
+
+ XYSeries seriesXY = new XYSeries("Sight " + animal.animalName);
+ xyDataset.addSeries(seriesXY);
+
+ int cursorX = 0;
+
+ for (int i = 0; i < 360; i += binSize)
+ {
+ seriesXY.add(i - 180, tabAngle[i]);
+ xls.setNumber(cursorX, 0, tabAngle[i]);
+ cursorX++;
+ }
+
+ new AnnounceFrame("Exported in file " + xlsFile);
+ xls.SaveAndClose();
+
+ graphFrame.getContentPane().add(
+ new ChartPanel(chart, 500, 200, 500, 200, 500, 500, false, false, true, true, true, true));
+ graphFrame.setVisible(true);
+ graphFrame.pack();
+ graphFrame.addToMainDesktopPane();
+ graphFrame.center();
+
+ }
+
+ }
+ }
+
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+
+ if (e.getSource() == computeVisionInFollowButton)
+ {
+ computeVisionGraph(VisionGraph.AT_FOLLOW_STATE);
+ }
+ if (e.getSource() == computeVisionWhenStoppedButton)
+ {
+ computeVisionGraph(VisionGraph.AT_STOP_STATE);
+ }
+
+ if (e.getSource() == exportSpeedButton)
+ {
+ // export speed computation
+
+ File xlsFile = new File(file.getAbsolutePath() + ".speed.xls");
+
+ try
+ {
+ XlsManager xls = new XlsManager(xlsFile);
+ // xls.createNewPage("Results");
+
+ exportSpeed(xls, mouseARecord, "Mouse A");
+ exportSpeed(xls, mouseBRecord, "Mouse B");
+
+ xls.SaveAndClose();
+
+ }
+ catch (IOException e1)
+ {
+ e1.printStackTrace();
+ }
+
+ new AnnounceFrame("Speed data have been exported to " + xlsFile.getAbsolutePath(), 5);
+
+ }
+
+ if (e.getSource() == computeLocationHeatMapButton)
+ {
+ computeLocationHeatMap();
+ // computeEventLocationHeatMap();
+ }
+
+ if (e.getSource() == computeUSVStat)
+ {
+ // computeVocStats();
+ computeUSVStats();
+ }
+
+ if (e.getSource() == exportEventsAsXML)
+ {
+ exportEventsAsXML();
+ }
+
+ if (e.getSource() == saveImageButton)
+ {
+ // save a full strip of the image
+ try
+ {
+ ImageIO.write(imageChrono, "png", new File(file.getAbsolutePath() + ".1.png"));
+ }
+ catch (IOException e1)
+ {
+ e1.printStackTrace();
+ }
+
+ // save criteria by criteria
+
+ int numeroCriteria = 0;
+ for (int y = 0; y < imageChrono.getHeight(); y += stepY)
+ {
+
+ BufferedImage image2 = new BufferedImage(imageChrono.getWidth(), stepY, BufferedImage.TYPE_INT_BGR);
+
+ Graphics2D targetG = (Graphics2D) image2.getGraphics();
+
+ targetG.drawImage(imageChrono, null, 0, -y);
+
+ try
+ {
+ ImageIO.write(image2, "png",
+ new File(file.getAbsolutePath() + ".criteria_" + numeroCriteria + ".png"));
+ }
+ catch (IOException e1)
+ {
+ e1.printStackTrace();
+ }
+ numeroCriteria++;
+
+ }
+
+ // save the strip with multiple lines.
+
+ float desiredWidth = 1600 * 2;
+
+ BufferedImage image2 = new BufferedImage((int) desiredWidth,
+ (int) (imageChrono.getHeight() * imageChrono.getWidth() / desiredWidth),
+ BufferedImage.TYPE_INT_BGR);
+
+ Graphics2D sourceG = (Graphics2D) imageChrono.getGraphics();
+ Graphics2D targetG = (Graphics2D) image2.getGraphics();
+
+ int stepY = 0;
+ for (int offset = 0; offset < imageChrono.getWidth(); offset += desiredWidth)
+ {
+ targetG.drawImage(imageChrono, null, -offset, stepY * imageChrono.getHeight());
+ stepY++;
+ }
+
+ try
+ {
+ ImageIO.write(image2, "png", new File(file.getAbsolutePath() + ".2.png"));
+ }
+ catch (IOException e1)
+ {
+ e1.printStackTrace();
+ }
+
+ }
+
+ }
+
+ private void exportEventsAsXML()
+ {
+
+ Document document = XMLUtil.createDocument(true);
+
+ for (EventTimeLine eventTimeLine : animal.eventTimeLineList)
+ {
+ Element elementTimeLine = document.createElement("EventTimeLine");
+ document.getDocumentElement().appendChild(elementTimeLine);
+ XMLUtil.setAttributeIntValue(elementTimeLine, "index", animal.eventTimeLineList.indexOf(eventTimeLine));
+ XMLUtil.setAttributeValue(elementTimeLine, "name", eventTimeLine.criteriaName);
+ XMLUtil.setAttributeValue(elementTimeLine, "type", eventTimeLine.eventType.toString());
+ XMLUtil.setAttributeValue(elementTimeLine, "timeLineCategory",
+ eventTimeLine.timeLineCategory.toString());
+
+ for (EventCriteria event : eventTimeLine.eventList)
+ {
+ Element elementEvent = document.createElement("event");
+ elementTimeLine.appendChild(elementEvent);
+ XMLUtil.setAttributeIntValue(elementEvent, "startFrame", event.startFrame);
+ XMLUtil.setAttributeIntValue(elementEvent, "endFrame", event.endFrame);
+ }
+ }
+
+ File xmlFile = new File(file.getAbsolutePath() + ".allEventsExported.xml");
+ XMLUtil.saveDocument(document, xmlFile);
+ AnnounceFrame f = new AnnounceFrame("File exported: " + xmlFile.getAbsolutePath());
+ }
+
+ private void computeUSVStats()
+ {
+
+ // designed for USVs
+ // given an event, let's say an USV event, this code provide the following ratio:
+ // The number of USV event that are correlated with the events of a specific timeEvent.
+ // 100% means all the USV event are overlapping with the candidate event.
+ // 50% means half the USV event are ...
+
+ WritableWorkbook workbook;
+
+ try
+ {
+
+ workbook = XLSUtil.createWorkbook(new File(file.getAbsolutePath() + ".event.xls"));
+ WritableSheet page = XLSUtil.createNewPage(workbook, "result");
+
+ int currentColumn = 1;
+ for (int indexOfUSVEvent = 29; indexOfUSVEvent < animal.eventTimeLineList.size(); indexOfUSVEvent++)
+ {
+
+ EventTimeLine eventTimeLineWatched = animal.eventTimeLineList.get(indexOfUSVEvent);
+
+ XLSUtil.setCellString(page, 0, 0, file.getAbsolutePath());
+ // XLSUtil.setCellString( page, 0, 1, "event watched: " + eventTimeLineWatched.criteriaName );
+ // XLSUtil.setCellString( page, 0, 2, "nb event(s): " + eventTimeLineWatched.eventList.size() );
+
+ int row = 5;
+
+ XLSUtil.setCellString(page, 0, row, "event");
+ XLSUtil.setCellString(page, currentColumn, row - 2, "Event: " + eventTimeLineWatched.criteriaName);
+ XLSUtil.setCellString(page, currentColumn, row - 1,
+ "Nb event: " + eventTimeLineWatched.eventList.size());
+
+ XLSUtil.setCellString(page, currentColumn, row, "nb corr event ");
+ XLSUtil.setCellString(page, currentColumn + 1, row, "% corr event");
+ // 1
+ // 1
+ // 2
+ row += 2;
+
+ for (EventTimeLine eventTimeLineCandidate : animal.eventTimeLineList)
+ {
+ XLSUtil.setCellString(page, 0, row, eventTimeLineCandidate.criteriaName);
+
+ int nbEventCandidate = eventTimeLineCandidate.eventList.size();
+ // XLSUtil.setCellNumber( page, currentColumn, row, nbEventCandidate );
+
+ int nbOccur = 0;
+
+ // check how many time the eventUSV occurs at the same time as the candidateEvent
+ for (EventCriteria eventUSV : eventTimeLineWatched.eventList)
+ {
+
+ for (EventCriteria eventCandidate : eventTimeLineCandidate.eventList)
+ {
+ if (isEventOverlapping(eventUSV, eventCandidate))
+ {
+ nbOccur++;
+ break;
+ }
+
+ }
+
+ }
+
+ float ratio = 100f * (float) nbOccur / (float) eventTimeLineWatched.eventList.size();
+ XLSUtil.setCellNumber(page, currentColumn, row, nbOccur);
+ XLSUtil.setCellNumber(page, currentColumn + 1, row, ratio);
+
+ row++;
+ }
+ currentColumn += 2;
+ }
+
+ XLSUtil.saveAndClose(workbook);
+
+ }
+ catch (IOException e)
+ {
+ e.printStackTrace();
+ }
+ catch (WriteException e)
+ {
+ e.printStackTrace();
+ }
+
+ }
+
+ /**
+ * check if a is overlapping b.
+ */
+ private boolean isEventOverlapping(EventCriteria a, EventCriteria b)
+ {
+
+ if (b.startFrame <= a.endFrame && b.endFrame >= a.startFrame)
+ {
+ return true;
+ }
+
+ return false;
+ }
+
+ /**
+ * @deprecated
+ * @param vocEventIndex
+ * @param candidateEventIndex
+ * @param sheet
+ */
+ private void feedXLSWithIntersectingEvent(int vocEventIndex, int candidateEventIndex, WritableSheet sheet)
+ {
+
+ /** Number of vocalization intersecting/overlapping with a contact */
+
+ EventTimeLine vocTimeLine = animal.eventTimeLineList.get(vocEventIndex);
+ EventTimeLine candidateTimeLine = animal.eventTimeLineList.get(candidateEventIndex);
+
+ int totalNbVoc = vocTimeLine.eventList.size();
+
+ int nbVocWithEvent = getNumberOfEventOverlap(vocTimeLine, candidateTimeLine);
+
+ int row = sheet.getRows();
+
+ XLSUtil.setCellString(sheet, 0, row, "nb Voc with event :" + candidateTimeLine.criteriaName);
+ XLSUtil.setCellNumber(sheet, 1, row, nbVocWithEvent);
+ XLSUtil.setCellString(sheet, 2, row, "percent:");
+ XLSUtil.setCellNumber(sheet, 3, row++, nbVocWithEvent * 100f / totalNbVoc);
+
+ }
+
+ /**
+ * @deprected
+ * provides the number of event vocTimeLine overlapping with the candidate time line
+ */
+ private int getNumberOfEventOverlap(EventTimeLine vocTimeLine, EventTimeLine candidateTimeLine)
+ {
+
+ int nbEvent = 0;
+
+ System.out.println("nb of event of type ** " + vocTimeLine.criteriaName + " ** matching ** "
+ + candidateTimeLine.criteriaName + " **");
+
+ for (EventCriteria vocEvent : vocTimeLine.eventList)
+ {
+ for (EventCriteria candidateEvent : animal.eventTimeLineList.get(1).eventList)
+ {
+ if (isEventOverlapping(vocEvent, candidateEvent))
+ {
+ nbEvent++;
+ break;
+ }
+ }
+
+ }
+
+ return nbEvent;
+ }
+
+ private void computeEventLocationHeatMap()
+ {
+ // red channel : contact events
+ // green channel : usv events
+
+ // check if event is found
+
+ // System.out.println( animal.eventTimeLineList.get( 29 ).criteriaName );
+
+ // create image
+
+ // should parse the all data to find min/max or check video input size.
+
+ SCALE = Float.parseFloat(scaleTextField.getText());
+
+ IcyBufferedImage image = new IcyBufferedImage(800, 600, 3, DataType.USHORT);
+
+ // check < threshold 1 events
+ for (EventCriteria event : animal.eventTimeLineList.get(0).eventList)
+ {
+ for (int t = event.startFrame; t <= event.endFrame; t++)
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ additiveDrawMouse(mouseA, image, 0);
+
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+ additiveDrawMouse(mouseB, image, 0);
+ }
+ }
+
+ // check USV
+ for (EventCriteria event : animal.eventTimeLineList.get(29).eventList)
+ {
+ for (int t = event.startFrame; t <= event.endFrame; t++)
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ additiveDrawMouse(mouseA, image, 1);
+
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+ additiveDrawMouse(mouseB, image, 1);
+ }
+ }
+
+ image.dataChanged();
+
+ // display image
+
+ Sequence outPutSequence = new Sequence(image);
+ // Icy.getMainInterface().addSequence( outPutSequence );
+
+ // save Image
+
+ File heatMapFile = new File(FileUtil.setExtension(file.getAbsolutePath(), ".heatmap.event.tif"));
+ Saver.save(outPutSequence, heatMapFile);
+ new AnnounceFrame("HeatMapFile saved to " + heatMapFile.getAbsolutePath(), 5);
+
+ }
+
+ private void computeLocationHeatMap()
+ {
+
+ // create image
+
+ // should parse the all data to find min/max or check video input size.
+
+ SCALE = Float.parseFloat(scaleTextField.getText());
+
+ IcyBufferedImage image = new IcyBufferedImage(800, 600, 4, DataType.USHORT);
+
+ // render mice
+
+ // mouse A
+ for (Integer t : mouseARecord.keySet())
+ {
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+ additiveDrawMouse(mouseA, image, 0);
+ }
+
+ // mouse B
+ for (Integer t : mouseBRecord.keySet())
+ {
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+ additiveDrawMouse(mouseB, image, 1);
+ }
+
+ // voc event on blue channel. (test purposes)
+ for (Integer t : mouseBRecord.keySet())
+ {
+ MouseInfoRecord mouseB = mouseBRecord.get(t);
+ MouseInfoRecord mouseA = mouseARecord.get(t);
+
+ EventTimeLine eventTimeLineWatched = animal.eventTimeLineList.get(29);
+ if (eventTimeLineWatched.getNbEvent(t, t) == 1)
+ {
+ additiveDrawMouse(mouseA, image, 2);
+ additiveDrawMouse(mouseB, image, 3);
+ }
+ }
+
+ image.dataChanged();
+
+ // display image
+
+ Sequence outPutSequence = new Sequence(image);
+ // Icy.getMainInterface().addSequence( outPutSequence );
+
+ // save Image
+
+ File heatMapFile = new File(FileUtil.setExtension(file.getAbsolutePath(), ".heatmap.tif"));
+ Saver.save(outPutSequence, heatMapFile);
+ new AnnounceFrame("HeatMapFile saved to " + heatMapFile.getAbsolutePath(), 5);
+
+ }
+
+ private void additiveDrawMouse(MouseInfoRecord mouse, IcyBufferedImage image, int channel)
+ {
+
+ Ellipse2D head = new Ellipse2D.Float((float) mouse.headPosition.getX() - (40f * SCALE) / 2f,
+ (float) mouse.headPosition.getY() - (40f * SCALE) / 2f, 40 * SCALE, 40 * SCALE); // 9
+ Ellipse2D body = new Ellipse2D.Float((float) mouse.bodyPosition.getX() - (77f * SCALE) / 2f,
+ (float) mouse.bodyPosition.getY() - (77f * SCALE) / 2f, 77 * SCALE, 77 * SCALE); // 17
+ Ellipse2D tail = new Ellipse2D.Float((float) mouse.tailPosition.getX() - (13f * SCALE) / 2f,
+ (float) mouse.tailPosition.getY() - (13f * SCALE) / 2f, 13 * SCALE, 13 * SCALE); // 3
+
+ int centerX = 0;
+ int centerY = 0;
+ int ray = 30;
+ additiveDrawOverImage(image, (int) head.getCenterX(), (int) head.getCenterY(), (int) ((40f * SCALE) / 2f),
+ channel);
+ additiveDrawOverImage(image, (int) body.getCenterX(), (int) body.getCenterY(), (int) ((77f * SCALE) / 2f),
+ channel);
+ additiveDrawOverImage(image, (int) tail.getCenterX(), (int) tail.getCenterY(), (int) ((13f * SCALE) / 2f),
+ channel);
+
+ }
+
+ private void additiveDrawOverImage(IcyBufferedImage image, int ox, int oy, int r, int channel)
+ {
+
+ short[] buffer = image.getDataXYAsShort(channel);
+ int width = image.getWidth();
+
+ for (int x = -r; x < r; x++)
+ {
+ int height = (int) Math.sqrt(r * r - x * x);
+
+ for (int y = -height; y < height; y++)
+ {
+ // bmp.SetPixel(x + ox, y + oy, Color.Red);
+ buffer[(oy + y) * width + x + ox]++;
+ }
+ }
+
+ }
+
+ private void exportSpeed(XlsManager xls, HashMap<Integer, MouseInfoRecord> mouseRecord, String name)
+ {
+
+ xls.createNewPage(name);
+
+ int tMin = 0;
+
+ START_MINUTE = Integer.parseInt(computeImageStartMinuteTextField.getText());
+ NB_MINUTE = Integer.parseInt(computeImageNbMinuteTextField.getText());
+ firstFrame = (int) (tMin + START_MINUTE * 60 * FPS);
+ lastFrame = (int) (firstFrame + NB_MINUTE * 60 * FPS);
+
+ int tMax = lastFrame;
+ /** frameWindow est utilisé pour lisser le calcul de deplacement entre deux points de temps. t-framewindow et t+frameWindow */
+ int frameWindow = 6; // 5
+
+ double speedFrame[] = new double[tMax - firstFrame]; // speed computed at each frame
+
+ xls.setLabel(0, 0, "frame#");
+ xls.setLabel(1, 0, "speed in px/frame time");
+ xls.setLabel(2, 0, "cumulated distance in px");
+
+ {
+ float nbVal = 0;
+ double totalDistance = 0;
+ for (int t = 0; t < tMax; t++)
+ {
+ if (mouseRecord.containsKey(t - frameWindow))
+ if (mouseRecord.containsKey(t + frameWindow))
+ if (mouseRecord.containsKey(t))
+ {
+ MouseInfoRecord mouseRecordPrev = mouseRecord.get(t - frameWindow);
+ MouseInfoRecord mouseRecordNext = mouseRecord.get(t + frameWindow);
+ MouseInfoRecord mouseRecordCurrentFrame = mouseRecord.get(t);
+
+ float distance = (float) mouseRecordPrev.bodyPosition
+ .distance(mouseRecordNext.bodyPosition);
+ distance /= (float) (frameWindow * 2 + 1); // pour obtenir une vitesse par frame.
+
+ totalDistance += distance;
+
+ mouseRecordCurrentFrame.speed = distance;
+
+ speedFrame[t - firstFrame] = distance;
+ xls.setNumber(0, (int) (nbVal + 1), nbVal);
+ xls.setNumber(1, (int) (nbVal + 1), distance);
+ xls.setNumber(2, (int) (nbVal + 1), totalDistance);
+
+ nbVal++;
+ }
+ }
+
+ }
+
+ xls.setLabel(4, 0, "second#");
+ xls.setLabel(5, 0, "speed in px/s");
+ xls.setLabel(6, 0, "cumulated distance in px");
+
+ // System.out.println("tMax : " + tMax );
+ {
+ int sec = 0;
+ int arrayCounter = 0;
+ double totalDistance = 0;
+ while (arrayCounter < tMax - FPS)
+ {
+
+ double speedSec = 0;
+
+ for (int i = 0; i < FPS; i++)
+ {
+ speedSec += speedFrame[arrayCounter];
+ totalDistance += speedFrame[arrayCounter];
+ arrayCounter++;
+ }
+
+ // speedSec;
+
+ System.out.println("sec:" + sec);
+
+ xls.setNumber(4, sec + 1, sec);
+ xls.setNumber(5, sec + 1, speedSec);
+ xls.setNumber(6, sec + 1, totalDistance);
+
+ sec++;
+ }
+
+ }
+ }
+
+ @Override
+ public void mouseClicked(MouseEvent e)
+ {
+ try
+ {
+ updateVideoImageAt(e.getX());
+ }
+ catch (InterruptedException ex)
+ {
+ // ignore
+ }
+ }
+
+ @Override
+ public void mouseEntered(MouseEvent e)
+ {
+ }
+
+ @Override
+ public void mouseExited(MouseEvent e)
+ {
+ }
+
+ @Override
+ public void mousePressed(MouseEvent e)
+ {
+ }
+
+ @Override
+ public void mouseReleased(MouseEvent e)
+ {
+ }
+
+ @Override
+ public void mouseDragged(MouseEvent e)
+ {
+ try
+ {
+ updateVideoImageAt(e.getX());
+ }
+ catch (InterruptedException ex)
+ {
+ // ignore
+ ex.printStackTrace();
+ }
+ }
+
+ private void updateVideoImageAt(int x) throws InterruptedException
+ {
+
+ x = x + firstFrame;
+ // x = x+ startOffset;
+
+ if (frameAccess == null)
+ {
+ // check if file exists.
+ if (videoFile.exists())
+ {
+ frameAccess = new FrameAccess(videoFile);
+ }
+ else
+ {
+ System.out.println("File specified in XML is not present. Checking in XML folder.");
+ videoFile = new File(FileUtil.getDirectory(file.getAbsolutePath()) + FileUtil.separator
+ + FileUtil.getFileName(videoFile.getName()));
+ frameAccess = new FrameAccess(videoFile);
+ }
+
+ }
+
+ videoImage = frameAccess.getImageAt(x + startOffset + 3);
+
+ if (videoImage == null)
+ {
+ videoImage = IcyBufferedImageUtil.toBufferedImage(new IcyBufferedImage(640, 480, 1, DataType.BYTE),
+ null);
+
+ }
+
+ // draw over.
+
+ Graphics2D g2 = (Graphics2D) videoImage.getGraphics();
+
+ // Mouse A
+ {
+ g2.setColor(Color.red);
+ MouseInfoRecord mouseA = mouseARecord.get(x);
+ MouseInfoRecord mouseB = mouseBRecord.get(x);
+ if (mouseA != null)
+ {
+ SCALE = Float.parseFloat(scaleTextField.getText());
+ // Ellipse2D head = new Ellipse2D.Float( (float)mouseA.headPosition.getX()-4f , (float)mouseA.headPosition.getY() - (40f*SCALE)/2f ,
+ // 40*SCALE , 40*SCALE ); //9
+ // Ellipse2D body = new Ellipse2D.Float( (float)mouseA.bodyPosition.getX()-8f , (float)mouseA.bodyPosition.getY() - (77f*SCALE)/2f ,
+ // 77*SCALE , 77*SCALE ); // 17
+ // Ellipse2D tail = new Ellipse2D.Float( (float)mouseA.tailPosition.getX()-1f , (float)mouseA.tailPosition.getY() - (13f*SCALE)/2f ,
+ // 13*SCALE , 13*SCALE ); // 3
+ // System.out.println(SCALE);
+ Ellipse2D head = new Ellipse2D.Float((float) mouseA.headPosition.getX() - (40f * SCALE) / 2f,
+ (float) mouseA.headPosition.getY() - (40f * SCALE) / 2f, 40 * SCALE, 40 * SCALE); // 9
+ Ellipse2D body = new Ellipse2D.Float((float) mouseA.bodyPosition.getX() - (77f * SCALE) / 2f,
+ (float) mouseA.bodyPosition.getY() - (77f * SCALE) / 2f, 77 * SCALE, 77 * SCALE); // 17
+ Ellipse2D tail = new Ellipse2D.Float((float) mouseA.tailPosition.getX() - (13f * SCALE) / 2f,
+ (float) mouseA.tailPosition.getY() - (13f * SCALE) / 2f, 13 * SCALE, 13 * SCALE); // 3
+
+ g2.draw(head);
+ g2.draw(body);
+ g2.draw(tail);
+
+ // draw eye view
+
+ double VAx = mouseA.headPosition.getX() - mouseA.bodyPosition.getX();
+ double VAy = mouseA.headPosition.getY() - mouseA.bodyPosition.getY();
+ double angleA = Math.atan2(VAy, VAx);
+
+ double departAngle1 = -8d * Math.PI / 9d;
+ double departAngle2 = 3d * Math.PI / 9d;
+
+ // centre
+ g2.drawLine((int) mouseA.headPosition.getX(), (int) mouseA.headPosition.getY(),
+ (int) (mouseA.headPosition.getX() + Math.cos(angleA) * 100d),
+ (int) (mouseA.headPosition.getY() + Math.sin(angleA) * 100d));
+
+ // gauche
+ g2.drawLine((int) mouseA.headPosition.getX(), (int) mouseA.headPosition.getY(),
+ (int) (mouseA.headPosition.getX() + Math.cos(angleA - 1 * Math.PI / 3d) * 50d),
+ (int) (mouseA.headPosition.getY() + Math.sin(angleA - 1 * Math.PI / 3d) * 50d));
+
+ // gauche full
+ g2.drawLine((int) mouseA.headPosition.getX(), (int) mouseA.headPosition.getY(),
+ (int) (mouseA.headPosition.getX() + Math.cos(angleA - 1 * 2 * Math.PI / 3d) * 100d),
+ (int) (mouseA.headPosition.getY() + Math.sin(angleA - 1 * 2 * Math.PI / 3d) * 100d));
+
+ // droit
+ g2.drawLine((int) mouseA.headPosition.getX(), (int) mouseA.headPosition.getY(),
+ (int) (mouseA.headPosition.getX() + Math.cos(angleA + 1 * Math.PI / 3d) * 50d),
+ (int) (mouseA.headPosition.getY() + Math.sin(angleA + 1 * Math.PI / 3d) * 50d));
+
+ // droit full
+ g2.drawLine((int) mouseA.headPosition.getX(), (int) mouseA.headPosition.getY(),
+ (int) (mouseA.headPosition.getX() + Math.cos(angleA + 1 * 2 * Math.PI / 3d) * 100d),
+ (int) (mouseA.headPosition.getY() + Math.sin(angleA + 1 * 2 * Math.PI / 3d) * 100d));
+
+ // ------------------------ MOUSE A REGARDE B
+
+ // teste A dans la vue.
+
+ double VABx = -mouseA.headPosition.getX() + mouseB.headPosition.getX();
+ double VABy = -mouseA.headPosition.getY() + mouseB.headPosition.getY();
+ double angleBA = Math.atan2(VABy, VABx); // + Math.PI;
+
+ boolean eventIsOk = true;
+
+ if (angleMin(angleBA, angleA) < demiVisionDeSouris)
+ {
+
+ }
+ else
+ {
+ eventIsOk = false;
+ }
+
+ if (mouseA.distanceIsInferiorToThreshold2)
+ {
+ eventIsOk = false;
+ }
+
+ g2.setColor(Color.black);
+ g2.drawLine((int) mouseA.headPosition.getX(), (int) mouseA.headPosition.getY(),
+ (int) (mouseA.headPosition.getX() + Math.cos(angleBA) * 100d),
+ (int) (mouseA.headPosition.getY() + Math.sin(angleBA) * 100d));
+
+ double angleDif = angleBA - angleA;
+
+ int angleDifDegree = (int) (180d * angleDif / Math.PI);
+
+ while (angleDifDegree > 180)
+ angleDifDegree -= 360;
+ while (angleDifDegree < -180)
+ angleDifDegree += 360;
+
+ }
+ }
+ // MOUSE B
+ {
+ g2.setColor(Color.green);
+ MouseInfoRecord mouseB = mouseBRecord.get(x);
+ if (mouseB != null)
+ {
+ // Ellipse2D head = new Ellipse2D.Float( (float)mouseB.headPosition.getX()-4f , (float)mouseB.headPosition.getY() - 4f , 9 , 9 );
+ // Ellipse2D body = new Ellipse2D.Float( (float)mouseB.bodyPosition.getX()-8f , (float)mouseB.bodyPosition.getY() - 8f , 17 , 17 );
+ // Ellipse2D tail = new Ellipse2D.Float( (float)mouseB.tailPosition.getX()-1f , (float)mouseB.tailPosition.getY() - 1f , 3 , 3 );
+
+ Ellipse2D head = new Ellipse2D.Float((float) mouseB.headPosition.getX() - (40f * SCALE) / 2f,
+ (float) mouseB.headPosition.getY() - (40f * SCALE) / 2f, 40 * SCALE, 40 * SCALE); // 9
+ Ellipse2D body = new Ellipse2D.Float((float) mouseB.bodyPosition.getX() - (77f * SCALE) / 2f,
+ (float) mouseB.bodyPosition.getY() - (77f * SCALE) / 2f, 77 * SCALE, 77 * SCALE); // 17
+ Ellipse2D tail = new Ellipse2D.Float((float) mouseB.tailPosition.getX() - (13f * SCALE) / 2f,
+ (float) mouseB.tailPosition.getY() - (13f * SCALE) / 2f, 13 * SCALE, 13 * SCALE); // 3
+
+ g2.draw(head);
+ g2.draw(body);
+ g2.draw(tail);
+
+ // draw eye view
+
+ double VAx = mouseB.headPosition.getX() - mouseB.bodyPosition.getX();
+ double VAy = mouseB.headPosition.getY() - mouseB.bodyPosition.getY();
+ double angleA = Math.atan2(VAy, VAx);
+
+ double departAngle1 = -8d * Math.PI / 9d;
+ double departAngle2 = 3d * Math.PI / 9d;
+
+ // centre
+ g2.drawLine((int) mouseB.headPosition.getX(), (int) mouseB.headPosition.getY(),
+ (int) (mouseB.headPosition.getX() + Math.cos(angleA) * 100d),
+ (int) (mouseB.headPosition.getY() + Math.sin(angleA) * 100d));
+
+ // gauche
+ g2.drawLine((int) mouseB.headPosition.getX(), (int) mouseB.headPosition.getY(),
+ (int) (mouseB.headPosition.getX() + Math.cos(angleA - 1 * Math.PI / 3d) * 50d),
+ (int) (mouseB.headPosition.getY() + Math.sin(angleA - 1 * Math.PI / 3d) * 50d));
+
+ // gauche full
+ g2.drawLine((int) mouseB.headPosition.getX(), (int) mouseB.headPosition.getY(),
+ (int) (mouseB.headPosition.getX() + Math.cos(angleA - 2 * Math.PI / 3d) * 100d),
+ (int) (mouseB.headPosition.getY() + Math.sin(angleA - 2 * Math.PI / 3d) * 100d));
+
+ // droit
+ g2.drawLine((int) mouseB.headPosition.getX(), (int) mouseB.headPosition.getY(),
+ (int) (mouseB.headPosition.getX() + Math.cos(angleA + 1 * Math.PI / 3d) * 50d),
+ (int) (mouseB.headPosition.getY() + Math.sin(angleA + 1 * Math.PI / 3d) * 50d));
+
+ // droit full
+ g2.drawLine((int) mouseB.headPosition.getX(), (int) mouseB.headPosition.getY(),
+ (int) (mouseB.headPosition.getX() + Math.cos(angleA + 1 * 2 * Math.PI / 3d) * 100d),
+ (int) (mouseB.headPosition.getY() + Math.sin(angleA + 1 * 2 * Math.PI / 3d) * 100d));
+
+ }
+ }
+
+ videoTimeLabel.setText("frame #" + x +
+
+ " " + (int) (x / (FPS * 60)) + ":" + decimalFormat.format((int) (x / FPS % 60)));
+
+ imageVideoComponent.setImage(videoImage);
+
+ // ComponentUtil.setFixedWidth( imageVideoComponent , 400 );
+
+ // getImage
+
+ imageVideoComponent.updateUI();
+
+ }
+
+ public double angleMin(double a1, double a2)
+ {
+ double angleMin = Double.MAX_VALUE;
+
+ a1 = angleToZeroTwoPi(a1);
+ a2 = angleToZeroTwoPi(a2);
+
+ for (int i = -2; i < 3; i++)
+ {
+ double dif = Math.abs(a1 + (i * Math.PI * 2d) - a2);
+ if (dif < angleMin)
+ angleMin = dif;
+ }
+
+ return angleMin;
+ }
+
+ public double angleToZeroTwoPi(double a)
+ {
+
+ while (a < 0)
+ {
+ a += 2 * Math.PI;
+ }
+ while (a > 2 * Math.PI)
+ {
+ a -= 2 * Math.PI;
+ }
+ return a;
+ }
+
+ @Override
+ public void mouseMoved(MouseEvent arg0)
+ {
+
+ }
+
+ }
+
+ @Override
+ public void keyPressed(KeyEvent arg0)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public void keyReleased(KeyEvent e)
+ {
+
+ if (e.getSource() == scaleTextField)
+ {
+ try
+ {
+ float scale = Float.parseFloat(scaleTextField.getText());
+ float ratio = scale / 0.22f;
+
+ distance1TextField.setText("" + ratio * 22);
+ distance2TextField.setText("" + ratio * 40);
+ distanceHeadHeadTextField.setText("" + ratio * 15);
+ distanceHeadGenitalTextField.setText("" + ratio * 15);
+ seuilSideTextField.setText("" + ratio * 12);
+ speed_threshold1TextField.setText("" + ratio * 0.5);
+ speed_threshold2TextField.setText("" + ratio * 2);
+ speed_threshold3TextField.setText("" + ratio * 4);
+ }
+ catch (NumberFormatException e1)
+ {
+
+ }
+ }
+
+ }
+
+ @Override
+ public void keyTyped(KeyEvent e)
+ {
+
+ }
+}