README.md

Micro-Manager Blocks

This is the repository for the source code of Micro-Manager Blocks, a plugin for the bioimage analysis software Icy, which was developed by members or former members of the Biological Image Analysis unit at Institut Pasteur. This plugin is licensed under GPL3 license.
Icy is developed and maintained by Biological Image Analysis unit at Institut Pasteur. The source code of Icy is also licensed under a GPL3 license.

Plugin description

Allows to use Micro-Manager for Icy features inside Protocols.
A more detailed user documentation can be found on the Micro-Manager Blocks documentation page on the Icy website: http://icy.bioimageanalysis.org/plugin/micro-manager-blocks/

Installation instructions

For end-users, refer to the documentation on the Icy website on how to install an Icy plugin.

For developers, see our Contributing guidelines and Code of Conduct.

Main functions and usage

Classname: plugins.stef.micromanager.block.MicroscopyBlocks

Citation

Please cite this plugins as follows:

Please also cite the Icy software and mention the version of Icy you used (bottom right corner of the GUI or first lines of the Output tab):
de Chaumont, F. et al. (2012) Icy: an open bioimage informatics platform for extended reproducible research, Nature Methods, 9, pp. 690-696
http://icy.bioimageanalysis.org

Author(s)

Stephane Dallongeville

Additional information

Icy-MMBlocks Blocks (protocols) for Micro-Manager (Icy plugin).