From 950671444223547ee78d04b68ce9943ea94a6404 Mon Sep 17 00:00:00 2001
From: Amandine Tournay <amandine.tournay@pasteur.fr>
Date: Tue, 9 Mar 2021 19:11:32 +0100
Subject: [PATCH] Added project
---
.gitignore | 6 +
StackRotation.jar | Bin 0 -> 4275 bytes
export.jardesc | 16 ++
pom.xml | 89 ++++++++++
.../spop/rotation3D/StackRotation.class | Bin 0 -> 4632 bytes
.../spop/rotation3D/StackRotation.java | 168 ++++++++++++++++++
6 files changed, 279 insertions(+)
create mode 100644 .gitignore
create mode 100644 StackRotation.jar
create mode 100644 export.jardesc
create mode 100644 pom.xml
create mode 100644 src/main/java/plugins/spop/rotation3D/StackRotation.class
create mode 100644 src/main/java/plugins/spop/rotation3D/StackRotation.java
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..3d47f98
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,6 @@
+.idea/
+target/
+.settings/
+*.iml
+.project
+.classpath
\ No newline at end of file
diff --git a/StackRotation.jar b/StackRotation.jar
new file mode 100644
index 0000000000000000000000000000000000000000..a18d426e7d854c66773851fa79c5c553782d1ead
GIT binary patch
literal 4275
zcma)9cTiLN){P<bCLIKWNRuudB}haFU<|#5A|OF}5d@JYJqm=Tw1`NTF1;v-iu5KC
zFakp8TzU^pcyRCcJ@wAqJ8zviGy9y`d;Q8EYu3_%lYp236ciMIf`AAez%O71fB*<J
zgX?0NS}+O3buCSpn!bTJ0(R610Bj<<yKce7#QSOCV#2-MeU*Bb2c!uzlQTeo4xF5#
z;t_C#^Ms1y<kdM@fC>Ph006LmTj1muz}?x)&cW4F;-9-{f9djccXR)jR`$QQdbr)U
zzVG1XDy{nG)L-ZP`!+=WWlI0PwT+YB|FMYMI9q#qzA$z$Ft_6fymmK2vD=(cr4Ge|
za%nE(V|t8Zuc+YDQVe5m2Rb}AkKjx}u}XQO0p69lQEv;3n9Pa>Ob6b`V4=>=3Bx&#
zBiYJT>apPM{3c)DE$wY}&*90<?;PT1Gdd{Un`VBDt?rG@?6KZHUdyEh3{4?Ok-*v=
zRXvLd6Wq(CC&XQ*d;0Rt>-c@&M^Odn7&*Irsx)BBRH3ikf;%K}jgv%g(v2P8bMt!5
z`$#9ls~6Wl_va{QwY@p4t`H+owfXAhy<Z>{`}l3EM%@#&{iFiJ1btarl>`|D<^&e?
z+v&+Grb~%!Eg>dM@S_(AYl$oTFpGvSYwv?0EW#cv)6}CLyo+yjp-)M0DEiq<9WBcX
z8G9k>Tep>#O`=jM+TJ+cB+f#u;;BeoN!5T|ukFe>TVzTSSA<Li;vR_QaEgEi&Oh<#
zcE-q~-@dtGlNcn(>wqEpxQpCmE@n-Um#miq$Flq03a8Hn-h2(#<UpWFsREXBKR7tb
zf<<BVTSY1vcgdRQZn5<QCF}&2L~{9znzYf#APeGf!YsGzNN35KC2fp_hpqWcw__-t
zV!5NyTNKR<Nk5`LJ9wj?0{K61P6|}6#Mjd;#;*k>PHE@kDI(|QU%a3t@mjanhTQ$6
z5y?2d#8ojk{{-}{_zraqBcDS`$wa;`x7Lp8R-kFyr3Br`e!DQeJRYQOQ5M}ca7Da%
zR3uxBQi^{Fab7(-4w-F5j{cY#_(-Z*;#i>{V*g&y5ah1tshO778u0`30oFXA=%vqQ
zGAlycnjO(3ac*5*Xj|LRiZv9Un-MRQuq!0Z6))^(Qe^+pH8@1)<7dQ_DM9RALERK@
z51FUS);Za)X0>N}5|qUF8diA?ZLQdBVrf`OObE|;pkUFKKo%GKSKQIjU`?_&ch<vn
zUkPH6H5PBt%x~c>RHI^Ly=-Zc4O@5a)>j>8MBeZ)7U|v=S8~*NPsdW^UhC{tc=`SE
z)E%Q8P)>4g<rn+8bSNfmpyXmSFYva9yT4d)OQmV8@y6rS$WG0boF3i>xbz0Ar23@q
zZFH?O<;hMi7+7Q5@J(DT1eqeNH;-Vd3V(}g@)9ST)_ECu)N#W_Z&!$gsKr_XpZFmR
zP7!rZ{HR^zV_#9G_2I$?daiuqwM+6{XKHfBri8DB_EAmiyiP~q$6;vyV5k+0(I0GS
zutqwjg|m5hcyMD~Bg|%WHBc%3^TCf1TO{)3EHQb_Hl2S6>eO&8J!^HS&fMl|pkG1N
z3T57nkLYaQ<O%w)eJ6c1Jtt+h^aWDf?CU}wz5Ur9yePdRy%u3HVMUO`+u;#3Zw2%&
zb5aO`I8I<XV%Z0NVM|`1^?|k2t}WlsE7=AaF^H9va?48_AtXDn`=aUkYcC2Os6E2T
zWC_2EG7l~;jSFHYsOMd6r{1WM=2F5Z7aT}$L-XXMW$muqY7A9MB4<kLW8f)QxZz$C
z%D`yCn5Kl{%M#&R1&$$Kz%FG8Mnm@ti3sHf()1*YDU<8mG=e?d0zR584-YS%-(HWp
zo^d|{@wG@$N;|59o{V0ckPs3TJx?oIILUIDFm~_x#uLf!y+TeXt+FoMM-l&J^F9IC
zCznR=Iv&kgPAVYLUBCyC`s$X}KElS@$5cTAwM1c-Jon7cy#xiKzkap3uZ3}gAGp`7
z_^q(fXuRj%wGfkD>(_k?Bxap3$=W5zZ1qeZcepnz^*7{bQq!kxsic}K8_Bg*S2m4n
z6nZC;bf3Lw!B&-y<4PciFwu9y!78P+S&H#(&b`f7nXRM`xU&rquft-qvDNQgYFMuK
zCfS7B+S--5GjpOEVMD#T&RA%lpm++2eB@(G8rm)a9=7535$EYgl8jQU>U?FMpb?2o
z9v?8R%M366A>D)M$zE9f5QV9PwZqW{!;)h7m6<vBjB=Hol~kEJ9C+YLogQ7xg{^a=
zwk*8!S$FssvvH<q+htQ2mw#4)3BnIvMwXke!XcLdto5v-3|z|0)8hVEW$s%6adBy7
zVj*6LPzVsp@}@UKD%@@Px_(CPl09LZQG%&^L}J-}NC?$sY9E8Z_2}}QbFlTGj+z?O
zN+KB)Pa+!HRr;5i_M5k0D-Wo^y~FcE%r&xXez6L2vkHYu&2^LcJ9NCWc$sL@s8Kar
z>?@7U7=k3@gr``j3bR9LW_j(*nzwrO)##h*UMrW4#5?;N3{71V^B7C#&)QWWM@weF
zh0fq^7E{;t&-igN!w>i7KI7fmg2m~4!)FJdWtKBBdW<|wv;SgVrI}f7$<gvv&bP#n
ziuIvvqEo)1njx=3BH3i|17Z8|i^D|3lXltL99tAU*|zi;7YI5tl5Keu@=1e4HhS*v
zN=!)#yw@JztMFAS#jD#$Y5UxzZyn=+bN9%x$OsellqefKW~z>fm`VD|M7isTUPu}K
zJqnNR@^3k0Sl$((Bb*;PZnoGxd!Q=k9SPxL+$<>$-P}M`6pKpxJyVXg&cpFG?4~EK
z)~9U-baH*x*x)Xk$w@R`2bzfw?^~8CcIPA$ly@1-sFsfe1Ea66BrNZe1cs<<#`!ip
zVY{-xv#F=hlf)*Fx~pGfK(qET{AGC}{5jk`;<nGaU8%?Lxy0xqwJ~;*3I2(&!|B)%
zGz&x}dkhU%nDayNH{}{nyo=-t9HTGO`9K*@1aGjImUrg;(LsZtc8$!#R{97dB+O(m
zV*o@g5@c%Ee_suohl*G0;Xv*`c%IwD*;bFL+@gF^XISxUXOv5me**+}x_ie#9_b#I
z8WoqTt5M1v&mrOies)=YG2SX2A@C~saETXA-j2KGINsHN(2hGmUVHqs7>)N0-jE(>
zghn*nbZrQ4TVsR7)FPX@?1m5gKh|4C*87LdY`VyPzyY7<?#aQG<lq)lqAe*sIHGgX
zJEzL6aXI+0b>$XO4nAInbQ~6K?78cp8IkMuP4veXL}ita6r3%((qJrtcV}7G^}E2K
zKxu|Ed~G_%Nge;S_foH|K#h)K)OLu+!_{cQ9IsD3Bp|V&a~3qpwb<||G9A)$u*gAO
zb6H82M8xd%gfWP9x4ID;aQBR1mQfyC3Uu4VrjKEJPxEmhCVx_%<I~rYD{hC}r=D<I
zYA#fU5&&Rl{L2&mWyYi;<lra%>%R~_ss7&+{^|C9v2eeeF-L1}>tz!&w-Gt!K;mn{
zA)i?K8|zqPaP>VhcKg{(@2IK>hRe*$jEQQPEK|+!;{!U0B+VyUo*&3)O1MQM58pMf
zn%@_F^M0ClOwRx{m^5Rn$J(F)N;Z*7KfbEOjlq`^R4&4>Vaot)x5j40uycOKAGZ)`
zZ{re<Ec(+vqpZot3Z1F2XVYz;T{@s-1<H3&Z~y4p!k|*orB)YHEiHVh$ukv7<Qf<|
zTv|KYq&nQ+A#NA0e~lYnFcZC9u9yA^XVk-&ylm;dca^G}_OOw<AxCyeNw{z%nn6{{
zJjtGihvl`)Gy}jsJ*oW?)Ji&A5!=P+AgFE$qqw%;H3BYg$mdh()74TwfcN|44YjWC
z#pi|PbLL2eLa?Tht?(3X?X4vhsw6jKr!7*<@mWYR{0Qr!tYLC(RN|o|?0|BZP@Loa
z(ylMADArhyQik*4!mO|DQY8u4m(>?+$|=4_+!GWA!3*A1@*ICcQf1yrn24^HiQLYj
zEM#d+)1I4G<KNRZ!|Dg~Bl=@H=^<*l#jc9>NEQQV(wDBCkQ)o0?Rq(tR)%Syf)qt|
zd}Szy^2Moz_gb1W3Cr`(64fG}YeaTdXOkZsfP#je8F<VG$j{#i^eN_97_LUaXUx(J
ztD5S&>Lx6(Z)m=?UEv8)QJq-XUl?RbRA^yTx7Y+MHs&gL%UN^ggg!7}5QK(Tq`G*D
z&y$L0vNoK<OvMCj>8n?L`D0R1sJE2P)Rv&#!0GG(TICirQi2kbspipCgPgmcgYIfW
z<^!dp?rf3dRCHFbUk~u!t2$5+K=c%1Fts;So1iY5Nrl_-Hlz>t*bOE-u(tK8VxQ*c
zHs3DRTc!pClbZ>Rd>;UKM|qx6ni{s{3PJ#O#X-&_?}<DaG=OBD3zPr}bE{6C-uu-N
zbmHqJUgKJhnv03++v-!DS5;-FIVE$L;PT0>rVd|&%UtWA@i;NBbi&5-b(RP_yH}k}
zHVn-dlhmx{D<ZmMTo!<x&6myCcT%lu_JhWYylGj}h%B3AmDBp?$r}k?<w9Gfix1+{
zGQ2}HmX2%cU;cOs@|$p=c~zc97V$~}{93MIc*Bu>tc9AqgK`LCavcFxx?dgC8%LM%
z1SN0T?B57(<>TT!b~WK?j2jG&qs=9bI}C=2tsm*-Sfr-lvDB#<fw)0GeP(jTA92Fo
z0|kMOQIy_`StF$+W<ji^@{Wi<g2TaU?5)rdOPSo9w<!4N5l?=xYH6`@O=8h_(JJQf
z5w4wcypsq!!pM8%qlcXE$M<;MjuK(FpVN&6!ZC-E=Ph2cX~OQUykK4R>b@n^QI@ek
zj&48Nyb}{|T<7z#<G@Pgd<yTJi7<PF9UhJ)S4wXMwv)fLja?vb>Rz97i1CuEGWW}P
z6HE9p|EKb3dmMyc1OWh_nNF4G43HV{Gw}YJR8Ir%@A#+qd&)uu_~%snlg0WMJ^Qz*
z)0F!Y=#%m{75ul+)71MD6({9yqrV8~uZKTP!M{rKX$t;{`IGXWSbmq`KQr;K#HWh>
k>y4i(`cHVBT-yIee5&s{a8k0<S+bL-^b7#7N_YD8AKiy)dH?_b
literal 0
HcmV?d00001
diff --git a/export.jardesc b/export.jardesc
new file mode 100644
index 0000000..7f140a2
--- /dev/null
+++ b/export.jardesc
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="WINDOWS-1252" standalone="no"?>
+<jardesc>
+ <jar path="Stack Rotation/StackRotation.jar"/>
+ <options buildIfNeeded="true" compress="true" descriptionLocation="/Stack Rotation/export.jardesc" exportErrors="false" exportWarnings="true" includeDirectoryEntries="true" overwrite="true" saveDescription="true" storeRefactorings="false" useSourceFolders="false"/>
+ <storedRefactorings deprecationInfo="true" structuralOnly="false"/>
+ <selectedProjects/>
+ <manifest generateManifest="true" manifestLocation="/Icy-Updater/META-INF/MANIFEST.MF" manifestVersion="1.0" reuseManifest="false" saveManifest="false" usesManifest="true">
+ <sealing sealJar="false">
+ <packagesToSeal/>
+ <packagesToUnSeal/>
+ </sealing>
+ </manifest>
+ <selectedElements exportClassFiles="true" exportJavaFiles="true" exportOutputFolder="false">
+ <javaElement handleIdentifier="=Stack Rotation/src"/>
+ </selectedElements>
+</jardesc>
diff --git a/pom.xml b/pom.xml
new file mode 100644
index 0000000..1f96c1e
--- /dev/null
+++ b/pom.xml
@@ -0,0 +1,89 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xmlns="http://maven.apache.org/POM/4.0.0"
+ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+ xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+ <modelVersion>4.0.0</modelVersion>
+
+ <!-- Inherited Icy Parent POM -->
+ <parent>
+ <groupId>org.bioimageanalysis.icy</groupId>
+ <artifactId>parent-pom-plugin</artifactId>
+ <version>1.0.3</version>
+ </parent>
+
+ <!-- Project Information -->
+ <artifactId>stack-rotation</artifactId>
+ <version>1.2.1</version>
+
+ <packaging>jar</packaging>
+
+ <name>Stack Rotation</name>
+ <description>Rotate the 3D stack from Front view to Right view or from Front view to Top view. </description>
+ <url></url>
+ <inceptionYear>2020</inceptionYear>
+
+ <organization>
+ <name>Institut Pasteur</name>
+ <url>https://pasteur.fr</url>
+ </organization>
+
+ <licenses>
+ <license>
+ <name>GNU GPLv3</name>
+ <url>https://www.gnu.org/licenses/gpl-3.0.en.html</url>
+ <distribution>repo</distribution>
+ </license>
+ </licenses>
+
+ <developers>
+ <developer>
+ <id>sdallongeville</id>
+ <name>Stéphane Dallongeville</name>
+ <url>https://research.pasteur.fr/fr/member/stephane-dallongeville/</url>
+ <roles>
+ <role>founder</role>
+ <role>lead</role>
+ <role>architect</role>
+ <role>developer</role>
+ <role>debugger</role>
+ <role>tester</role>
+ <role>maintainer</role>
+ <role>support</role>
+ </roles>
+ </developer>
+ </developers>
+
+ <!-- Project properties -->
+ <properties>
+
+ </properties>
+
+ <!-- Project build configuration -->
+ <build>
+
+ </build>
+
+ <!-- List of project's dependencies -->
+ <dependencies>
+ <!-- The core of Icy -->
+ <dependency>
+ <groupId>org.bioimageanalysis.icy</groupId>
+ <artifactId>icy-kernel</artifactId>
+ </dependency>
+
+ <!-- The EzPlug library, simplifies writing UI for Icy plugins. -->
+ <dependency>
+ <groupId>org.bioimageanalysis.icy</groupId>
+ <artifactId>ezplug</artifactId>
+ </dependency>
+ </dependencies>
+
+ <!-- Icy Maven repository (to find parent POM) -->
+ <repositories>
+ <repository>
+ <id>icy</id>
+ <name>Icy's Nexus</name>
+ <url>https://icy-nexus.pasteur.fr/repository/Icy/</url>
+ </repository>
+ </repositories>
+</project>
\ No newline at end of file
diff --git a/src/main/java/plugins/spop/rotation3D/StackRotation.class b/src/main/java/plugins/spop/rotation3D/StackRotation.class
new file mode 100644
index 0000000000000000000000000000000000000000..68074344ee33ae06c785a18f06198858479a547b
GIT binary patch
literal 4632
zcmbVPX>?R)8GgRZOzvdn29l5)mJrsKEChz6nj&G%0#2I%O~Mk=0ymROGB8V+xf7Du
z*4n0vYo%HRTdS$HQR~twBv>p^3su`5{h>X2^r%Pu)zhPYsz1tU8=vpaotp^++C!52
zt?&1)&-cDxUi;w1a{z9^8wzp+Ztjnydc(0~AlV=94<zEIZieHrTbcsxrXD)dX3rJ4
z1<Ep{dQa+5Je3F-!*V6iJiL>gf?R>6SCVu`;-MqSKtzxA1{&m8z!Q%3r%ZtrEmsmd
z{C4Y!cH?Nuh=q)L0k=8SZwM^AE`5hFXp%NJo-!@&x$DERu(?sdRZ+Q{JR0LYh7T?j
zs8Erwph)1Rk0RfTVyYaJD*I4~5_x>CfL76RSRc^ShP9iCaICk!a(5mC=BrTPRZuFh
z<az?6!d{e7wGNu6V6i~Kl`OqjDxhvn#A9Yhye-_@#}ms1eD+F5yx)hLQLbQxK;hKk
zhIl+;=rI))s1#5J^hnCsaY&$~VqayJ+BR9e4-2qT+Ep!3KZ9LeS!ZlhvsN-(($=q5
zkq4g_YZ!_hRw$%TYE}5*6`0);jv3oi(QYHrp?60Z)S{MnNRKeyVL7)K-DY1nDNybN
z{JPj=)O|A6VLcKawqpDV73;v|S$a=T^KfH4+8>V@F+#4q!eMz8h8;4-Q37RyijCMr
zCP~BW2uF>kaI!z54>4Z!A`zt+gGMN2QeYt(R5YSVz}st>yQQ}!K&JV6NB3bPWY#O#
z%B^r{D3G-A9moLPhh}_IMG&_!mgKXewRvxAORHh(J-Vq2EUu_*iARmVU^Ehlay2lW
zfKhD0b_K13k>sB;!x2fci@k~+*eOsPN*KCnOg|^Ev0^&kjL0^Fur>ya`VW)aj5dj$
zb^`tiR?|gUj$MFV(phw1F%6o+tnDBl7GbZ7PVA!{bderO276=igwd!cEw5%B$y~dA
zK0@qH6-#lKz?zDd8Qn`OW?q+mKcM2EywwV0y<LworUKn6mg6ot>QP~U*T=)C><UUN
zE3XZsZM%XDg+QN*Fb)g&iNQ>W1r}UWJ7TU7j8s$}@=^~QM;xXTp}^d0SYYXW^Z+xT
zK)#i>TlIeHDoNW4WMisGVIU3AcHWY`R$dIstw9w-*;}1*@lz`9&R(R8n{ls-PiHT7
z$i>g7xIcTbQNakAcXc%>c!-y!iz7+*h>FkRa{_sEViN(qx041{1cSjDLGT59Nx>Ic
zon*{p`VWNSkqB=PYg0f^B=n)c7TMM`rSbhJzRX-=ZFIz&;wk15YhTL9LW~WveU(zX
z#~2RDJ{;A1jX*Fo)Q~!K$VeDHLAfAx{;G<{rEPv&XPKydIF7GNxSycgrT#&gE{@|H
zDxScTw2z_7*jG{!yjr*<Z^lz9zJ+h6BW=kOSWa$fa{ZWTYc)+J>;62AXB2#AdaW2r
znnqN`cablU(;E^H!~BR;7r{f^_JpGc2JM~+%$k$J>WLYv=P8$|cXP(}K!WGFBP1`L
z5IpUohXfW{7@XN<%($MAEIh1PJw_;^Ck(4@3RGO3ckPFPm8O{fTf#}xvab*?syK^Z
zq`jUg3<8xiT)F{0VLvTMm$_uTedlmN!FhW0%KAHlP!%uZm$Z)8luwMS^_(Wd&R`d%
zhL`x-`7oX65wG>y;e{laugV%T=))uVw)4{UlaS)g=JUhi;cMr^D`ad9Tg7wQ8*Q~r
zrc8n~hM$Km<V%DtWKFhuR$=yD?(-4Eb{1!Y)*RSaHG$bxXHnQ$G-m?ZY0TqfL1)oI
z&r4X;=_*>%-svt{*6uokn<h|o8mrQ@0gJZg1#-&as}d-oY>>Mf1x#s$Sc770;QV7;
zRVkB_@Nv|!7r52YqJ^jBUP)EeDa@O|TG_9Xy?X-dr??l9FZf{bqLlp0pkZ+q=MsnW
zW{2~?=n3hI!;-Ok99u4+x#cXHJ6Dcl+Zo(Gfje5ItZ{T)z@nlh<JfZ&vsRu#S8KJL
z?a$g==4|TR<ZOS{I6|+&TU9-dUJ}-@KO(htS-x1!cMtePQ?Y{jmSYtvQHv_9MKx~2
zYS!fdc9Bx24Pp93`e;d7TiX&9`w>H&z9}VjKSwz@N~(Og-p5)6&HP*FXMkD#NW_5V
zoJ6kdh2~l>&744@m0Bh@vN=}gW;<NxVS7(qF5CO+6wOnnx%)2Rft+<-P2pJcaQ2{U
zU7oAXH-<~DI{z4AuJvP>JKtMcrTI!V|2Q5d5I)~NB1Ea?8J&DfZf|kbsbi>d)#Z<2
z+59}sU#sQUYAV^49^^?5%lfqZgEeg<`9jMt8=d^yh$^`69-aJchSB*EztH@eGCFx&
zvfO+Y$2&C-byBG8S0?bab$&}q@qE9gQifVvT04%DX+}Ktb~W{zPyN0rIa0>UBR-+|
zwA|6jb!RYI{k#*K`{`+*p8njx+p!6=v6*PvLO(aqnT?EA6C=~im2LbDq7}EJjctg1
zgt0h^oj8U&a1YvXlKs=1|B&maNqZi9aFMT=KVl#LiY~m({(ra=A7GEj#WqoZgJO;q
zb?{t)43-sTMvv>yVvM2m2|vDP#d|i-e4lGBXuKjn;K)raFXK6mJk<5Slsm?tm*YS9
z5l0I3{wIEn5#Ew5_yc}|hX{}+yn*Mr>m%|~c!487Od|289H|)QKMOzOD4#l);}os%
z<Ij{L=~N4G4JeqTBm4xMke~cf@PL8`snmP$2=^SH?BuuTGQ5|O$It&h<|#NX3f@JL
zLM`~FvSE6{hH3E)!BlgXO^4}43#QSJ0MpGDfYw+rU7Cg|QDi}LMwI^DLFw-@D81mI
z^f4)LlSC=?xiOGR{7<2@ekPRm5v7M2xd>4jB}!wAOq`MLXRMAg+6l(lWN-$E&q1Pe
zm?#}2_1)aPhbX<5?R_}Gew3r<xPFSX=ZKJ3h>bV#F#du^@D}@b_)L3`PdE=uF`G}Y
zB0Oqkr8G*59h4S1DD^og^<+?rNe89xIw*a|LFvC8l>Wm(>F*tszV4vZbWnP$gVJ&v
zrEfYY{nHJjv@9E?b2BKF)p6XZ9xIt6h;N9g5|nE#Jf2l{gj04Va3&3JCWRdS0&`c&
zx-*WSkK-jdWSx11!zp&NtbG3j@7t5ColjY8OVUSewq$}=@hdVG__ZUT$rhkWt~F@^
cQ(S!(hiAz3*({E#!%@X=Y>ux{$sD}?f9@|`>;M1&
literal 0
HcmV?d00001
diff --git a/src/main/java/plugins/spop/rotation3D/StackRotation.java b/src/main/java/plugins/spop/rotation3D/StackRotation.java
new file mode 100644
index 0000000..95aa806
--- /dev/null
+++ b/src/main/java/plugins/spop/rotation3D/StackRotation.java
@@ -0,0 +1,168 @@
+package plugins.spop.rotation3D;
+
+import icy.image.IcyBufferedImage;
+import icy.sequence.Sequence;
+import icy.type.collection.array.Array1DUtil;
+import icy.util.OMEUtil;
+import plugins.adufour.blocks.lang.Block;
+import plugins.adufour.blocks.util.VarList;
+import plugins.adufour.ezplug.EzPlug;
+import plugins.adufour.ezplug.EzVarSequence;
+import plugins.adufour.ezplug.EzVarText;
+
+public class StackRotation extends EzPlug implements Block
+{
+
+ EzVarSequence input = new EzVarSequence("Input");
+ EzVarText type = new EzVarText("Type", new String[] { "FrontToRight", "FrontToTop" }, false);
+ // VarSequence output = new VarSequence("Output", false);
+
+ EzVarSequence output = new EzVarSequence("Output");
+
+ @Override
+ public void initialize()
+ {
+ // TODO Auto-generated method stub
+ super.addEzComponent(input);
+ super.addEzComponent(type);
+ // super.addOutput(output);
+ super.setTimeDisplay(true);
+
+ }
+
+ @Override
+ public void execute()
+ {
+
+ Sequence sequence = input.getValue(true);
+ Sequence seq_out = new Sequence(OMEUtil.createOMEXMLMetadata(sequence.getOMEXMLMetadata()));
+ if (type.getValue().equalsIgnoreCase("FrontToRight"))
+ {
+ seq_out = FrontToRight(sequence);
+ seq_out.setName("FrontToRight");
+ }
+ if (type.getValue().equalsIgnoreCase("FrontToTop"))
+ {
+ seq_out = FrontToTop(sequence);
+ seq_out.setName("FrontToTop");
+
+ }
+
+ if (getUI() != null) addSequence(seq_out);
+ output.setValue(seq_out);
+
+ }
+
+ public static Sequence FrontToRight(Sequence sequence)
+ {
+
+ int z = 0;
+
+ Sequence seq = new Sequence();
+
+ int dim_x = sequence.getSizeX();
+ int dim_y = sequence.getSizeY();
+ int dim_z = sequence.getSizeZ();
+ int dim_t = sequence.getSizeT();
+ int dim_c = sequence.getSizeC();
+ double[][] tab = new double[dim_z][dim_x * dim_y];
+ double[][][] tab_r = new double[dim_c][dim_x][dim_y * dim_z];
+
+ for (int t = 0; t < dim_t; t++)
+ {
+ for (int c = 0; c < dim_c; c++)
+ {
+ for (z = 0; z < dim_z; z++)
+ {
+ tab[z] = Array1DUtil.arrayToDoubleArray(sequence.getDataXY(t, z, c), false);
+ }
+ for (z = 0; z < dim_z; z++)
+ for (int y = 0; y < dim_y; y++)
+ for (int x = 0; x < dim_x; x++)
+ {
+ tab_r[c][x][y * dim_z + z] = tab[z][y * dim_x + x];
+ }
+ }
+
+ for (z = 0; z < dim_x; z++)
+ {
+ IcyBufferedImage Icy = new IcyBufferedImage(dim_z, dim_y, dim_c, sequence.getDataType());
+ for (int c = 0; c < dim_c; c++)
+ Icy.setDataXY(c, tab_r[c][z]);
+ seq.setImage(t, z, Icy);
+ }
+ }
+
+ System.gc();
+ return seq;
+
+ }
+
+ public static Sequence FrontToTop(Sequence sequence)
+ {
+
+ int z = 0;
+
+ Sequence seq = new Sequence();
+
+ int dim_x = sequence.getSizeX();
+ int dim_y = sequence.getSizeY();
+ int dim_z = sequence.getSizeZ();
+ int dim_t = sequence.getSizeT();
+ int dim_c = sequence.getSizeC();
+ double[][] tab = new double[dim_z][dim_x * dim_y];
+ double[][][] tab_r = new double[dim_c][dim_y][dim_x * dim_z];
+
+ for (int t = 0; t < dim_t; t++)
+ {
+ for (int c = 0; c < dim_c; c++)
+ {
+ for (z = 0; z < dim_z; z++)
+ {
+ tab[z] = Array1DUtil.arrayToDoubleArray(sequence.getDataXY(t, z, c), false);
+ }
+ for (z = 0; z < dim_z; z++)
+ for (int y = 0; y < dim_y; y++)
+ for (int x = 0; x < dim_x; x++)
+ {
+ tab_r[c][y][z * dim_x + x] = tab[z][y * dim_x + x];
+ }
+ }
+
+ for (z = 0; z < dim_y; z++)
+ {
+ IcyBufferedImage Icy = new IcyBufferedImage(dim_x, dim_z, dim_c, sequence.getDataType());
+ for (int c = 0; c < dim_c; c++)
+ Icy.setDataXY(c, tab_r[c][z]);
+ seq.setImage(t, z, Icy);
+ }
+ }
+
+ System.gc();
+
+ return seq;
+
+ }
+
+ public void clean()
+ {
+ }
+
+ @Override
+ public void declareInput(VarList inputMap)
+ {
+ // TODO Auto-generated method stub
+ inputMap.add(input.getVariable());
+ inputMap.add(type.getVariable());
+
+ }
+
+ @Override
+ public void declareOutput(VarList outputMap)
+ {
+ // TODO Auto-generated method stub
+ outputMap.add(output.getVariable());
+
+ }
+
+}
--
GitLab