From e4f30afbe8063fb18ad1bc21ca92c4e7e5e64f7b Mon Sep 17 00:00:00 2001
From: Amandine Tournay <amandine.tournay@pasteur.fr>
Date: Tue, 9 Mar 2021 19:13:48 +0100
Subject: [PATCH] Added project
---
.gitignore | 6 +
pom.xml | 83 ++++++++
.../TimeStampOverlay$DisplayStyle.class | Bin 0 -> 1243 bytes
.../fab/timestamp/TimeStampOverlay.class | Bin 0 -> 5735 bytes
.../fab/timestamp/TimeStampOverlay.java | 178 ++++++++++++++++++
.../plugins/fab/timestamp/Timestamp.class | Bin 0 -> 1124 bytes
.../java/plugins/fab/timestamp/Timestamp.java | 26 +++
7 files changed, 293 insertions(+)
create mode 100644 .gitignore
create mode 100644 pom.xml
create mode 100644 src/main/java/plugins/fab/timestamp/TimeStampOverlay$DisplayStyle.class
create mode 100644 src/main/java/plugins/fab/timestamp/TimeStampOverlay.class
create mode 100644 src/main/java/plugins/fab/timestamp/TimeStampOverlay.java
create mode 100644 src/main/java/plugins/fab/timestamp/Timestamp.class
create mode 100644 src/main/java/plugins/fab/timestamp/Timestamp.java
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..3d47f98
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,6 @@
+.idea/
+target/
+.settings/
+*.iml
+.project
+.classpath
\ No newline at end of file
diff --git a/pom.xml b/pom.xml
new file mode 100644
index 0000000..4a6defa
--- /dev/null
+++ b/pom.xml
@@ -0,0 +1,83 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xmlns="http://maven.apache.org/POM/4.0.0"
+ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+ xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+ <modelVersion>4.0.0</modelVersion>
+
+ <!-- Inherited Icy Parent POM -->
+ <parent>
+ <groupId>org.bioimageanalysis.icy</groupId>
+ <artifactId>parent-pom-plugin</artifactId>
+ <version>1.0.3</version>
+ </parent>
+
+ <!-- Project Information -->
+ <artifactId>timestamp-overlay</artifactId>
+ <version>1.0.6</version>
+
+ <packaging>jar</packaging>
+
+ <name>Timestamp Overlay</name>
+ <description>Displays a customizable time stamp over a 2D sequence.</description>
+ <url>http://icy.bioimageanalysis.org/plugin/timestamp-overlay/</url>
+ <inceptionYear>2020</inceptionYear>
+
+ <organization>
+ <name>Institut Pasteur</name>
+ <url>https://pasteur.fr</url>
+ </organization>
+
+ <licenses>
+ <license>
+ <name>GNU GPLv3</name>
+ <url>https://www.gnu.org/licenses/gpl-3.0.en.html</url>
+ <distribution>repo</distribution>
+ </license>
+ </licenses>
+
+ <developers>
+ <developer>
+ <id>sdallongeville</id>
+ <name>Stéphane Dallongeville</name>
+ <url>https://research.pasteur.fr/fr/member/stephane-dallongeville/</url>
+ <roles>
+ <role>founder</role>
+ <role>lead</role>
+ <role>architect</role>
+ <role>developer</role>
+ <role>debugger</role>
+ <role>tester</role>
+ <role>maintainer</role>
+ <role>support</role>
+ </roles>
+ </developer>
+ </developers>
+
+ <!-- Project properties -->
+ <properties>
+
+ </properties>
+
+ <!-- Project build configuration -->
+ <build>
+
+ </build>
+
+ <!-- List of project's dependencies -->
+ <dependencies>
+ <!-- The core of Icy -->
+ <dependency>
+ <groupId>org.bioimageanalysis.icy</groupId>
+ <artifactId>icy-kernel</artifactId>
+ </dependency>
+ </dependencies>
+
+ <!-- Icy Maven repository (to find parent POM) -->
+ <repositories>
+ <repository>
+ <id>icy</id>
+ <name>Icy's Nexus</name>
+ <url>https://icy-nexus.pasteur.fr/repository/Icy/</url>
+ </repository>
+ </repositories>
+</project>
diff --git a/src/main/java/plugins/fab/timestamp/TimeStampOverlay$DisplayStyle.class b/src/main/java/plugins/fab/timestamp/TimeStampOverlay$DisplayStyle.class
new file mode 100644
index 0000000000000000000000000000000000000000..dfca7e9ba05cd8567731af1d9f74b4c160bbee1b
GIT binary patch
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literal 0
HcmV?d00001
diff --git a/src/main/java/plugins/fab/timestamp/TimeStampOverlay.class b/src/main/java/plugins/fab/timestamp/TimeStampOverlay.class
new file mode 100644
index 0000000000000000000000000000000000000000..a3e9ba1400212327f34cf891c077f373e2dac685
GIT binary patch
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diff --git a/src/main/java/plugins/fab/timestamp/TimeStampOverlay.java b/src/main/java/plugins/fab/timestamp/TimeStampOverlay.java
new file mode 100644
index 0000000..0d3ea62
--- /dev/null
+++ b/src/main/java/plugins/fab/timestamp/TimeStampOverlay.java
@@ -0,0 +1,178 @@
+package plugins.fab.timestamp;
+
+import java.awt.Color;
+import java.awt.Font;
+import java.awt.Graphics2D;
+import java.awt.event.KeyEvent;
+import java.awt.geom.Point2D;
+import java.awt.geom.Rectangle2D;
+import java.util.concurrent.TimeUnit;
+
+import icy.canvas.IcyCanvas;
+import icy.gui.frame.progress.AnnounceFrame;
+import icy.math.MathUtil;
+import icy.math.UnitUtil;
+import icy.painter.Overlay;
+import icy.sequence.Sequence;
+import icy.util.GraphicsUtil;
+import icy.util.StringUtil;
+
+public class TimeStampOverlay extends Overlay
+{
+ enum DisplayStyle
+ {
+ FRAME, TIME
+ };
+
+ String timeStampText;
+ int x;
+ int y;
+ Font font;
+ DisplayStyle displayStyle = DisplayStyle.FRAME;
+ Rectangle2D textBound = new Rectangle2D.Double(0, 0, 0, 0);
+ int fontSize = 20;
+ int displaySelectionIndex = 0;
+
+ public TimeStampOverlay(Sequence sequence)
+ {
+ super("Timestamp");
+
+ x = 20;
+ y = sequence.getHeight() - 20;
+ font = new Font("Arial", Font.BOLD, fontSize);
+ }
+
+ /**
+ * Display the time with all the units.
+ *
+ * @param valueInMs
+ * : value in milliseconds
+ * @param displayMs : Even if a unit is not relevant (equals to zero), it will be displayed.
+ * @return <b>Example:</b> "2h 3min 40sec 350ms".
+ */
+ public static String getTimeAsString(double valueInMs, boolean displayMs)
+ {
+ double v = Math.abs(valueInMs);
+
+ final int day = (int) (v / (24d * 60d * 60d * 1000d));
+ v %= 24d * 60d * 60d * 1000d;
+ final int hour = (int) (v / (60d * 60d * 1000d));
+ v %= 60d * 60d * 1000d;
+ final int minute = (int) (v / (60d * 1000d));
+ v %= 60d * 1000d;
+ final int second = (int) (v / 1000d);
+ v %= 1000d;
+ final double ms = MathUtil.round(v, 1);
+
+ String result = "";
+
+ if (day > 0)
+ result += day + "d ";
+ if (hour > 0)
+ result += String.format("%2dh ", Integer.valueOf(hour));
+ else if (!StringUtil.isEmpty(result))
+ result += "00h ";
+ if (minute > 0)
+ result += String.format("%2dmin ", Integer.valueOf(minute));
+ else if (!StringUtil.isEmpty(result))
+ result += "00min ";
+ if (second > 0)
+ result += String.format("%2dsec ", Integer.valueOf(second));
+ else if (!StringUtil.isEmpty(result))
+ result += "00sec ";
+ if (ms > 0d)
+ result += String.format("%05.1fms", Double.valueOf(ms));
+ else if (displayMs && !StringUtil.isEmpty(result))
+ result += String.format("%05.1fms", Double.valueOf(0));
+
+ return result;
+ }
+
+ @Override
+ public void paint(Graphics2D g, Sequence sequence, IcyCanvas canvas)
+ {
+
+ if (g == null)
+ return;
+
+ g.setColor(Color.white);
+ g.setFont(font);
+
+ switch (displayStyle)
+ {
+ case FRAME:
+ timeStampText = "Current frame: " + canvas.getPositionT();
+ break;
+
+ case TIME:
+ final double timeIntervalMs = sequence.getTimeInterval() * 1000d;
+ final TimeUnit unit = UnitUtil.getBestTimeUnit(timeIntervalMs * 10);
+ double ms = canvas.getPositionT() * timeIntervalMs;
+
+ // minute or "higher" time unit ?
+ if (unit.ordinal() >= TimeUnit.MINUTES.ordinal())
+ timeStampText = getTimeAsString(ms, (timeIntervalMs % 1000d) != 0d);
+ else
+ timeStampText = UnitUtil.displayTimeAsStringWithComma(ms, 3, unit);
+ break;
+ }
+
+ g.drawString(timeStampText, x, y);
+
+ Rectangle2D r = GraphicsUtil.getStringBounds(g, font, timeStampText);
+ r.setRect(r.getX() + x, r.getY() + y, r.getWidth(), r.getHeight());
+ textBound = r;
+ }
+
+ @Override
+ public void keyPressed(KeyEvent e, Point2D imagePoint, IcyCanvas canvas)
+ {
+ if (e.isConsumed())
+ return;
+
+ if (e.getKeyChar() == 'm')
+ {
+ x = (int) imagePoint.getX();
+ y = (int) imagePoint.getY();
+ canvas.getSequence().painterChanged(this);
+ return;
+ }
+
+ // if ( !isPointInTextArea( imagePoint ) ) return;
+
+ if (e.getKeyChar() == 't')
+ {
+ displaySelectionIndex++;
+ if (displaySelectionIndex >= DisplayStyle.values().length)
+ {
+ displaySelectionIndex = 0;
+ }
+
+ displayStyle = DisplayStyle.values()[displaySelectionIndex];
+
+ }
+
+ if (e.getKeyChar() == '+')
+ {
+ fontSize++;
+ }
+
+ if (e.getKeyChar() == '-')
+ {
+ fontSize--;
+ if (fontSize < 2)
+ fontSize = 2;
+ }
+
+ if (e.getKeyChar() == 'k')
+ {
+ canvas.getSequence().removePainter(this);
+ new AnnounceFrame("Time Stamp removed", 2);
+ }
+
+ font = new Font("Arial", Font.BOLD, fontSize);
+ canvas.getSequence().painterChanged(this);
+
+ e.consume();
+ }
+}
diff --git a/src/main/java/plugins/fab/timestamp/Timestamp.class b/src/main/java/plugins/fab/timestamp/Timestamp.class
new file mode 100644
index 0000000000000000000000000000000000000000..09638ce64d13ceab40237f6f438d4c8e12bb17ef
GIT binary patch
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diff --git a/src/main/java/plugins/fab/timestamp/Timestamp.java b/src/main/java/plugins/fab/timestamp/Timestamp.java
new file mode 100644
index 0000000..e6d10a7
--- /dev/null
+++ b/src/main/java/plugins/fab/timestamp/Timestamp.java
@@ -0,0 +1,26 @@
+package plugins.fab.timestamp;
+
+import icy.gui.frame.progress.ToolTipFrame;
+import icy.plugin.abstract_.PluginActionable;
+import icy.sequence.Sequence;
+
+public class Timestamp extends PluginActionable
+{
+
+ // IcyFrame mainFrame ;
+
+ @Override
+ public void run()
+ {
+ new ToolTipFrame("<html>" + "<b>TimeStamp added.</b>" + "<br>"
+ + "<br>Place your cursor over the TimeStamp's text and type one of the following letters to change the display:"
+ + "<br>" + "<li> t : switch from frame to time (using time scale) display"
+ + "<li> +/- : increase / decrease font size" + "<li> m : move time stamp to cursor location"
+ + "<li> k : remove time stamp" + "</html>");
+
+ final Sequence sequence = getActiveSequence();
+
+ if (sequence != null)
+ sequence.addOverlay(new TimeStampOverlay(sequence));
+ }
+}
--
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