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.. toctree::
   :maxdepth: 2
   :caption: Documentation

   changelog
   installation
   configuration
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   usage
   contributing
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.. toctree::
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   :maxdepth: 4
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   :caption: API

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   Core package <api/aria.core>
   Conbox package <api/aria.conbox>
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.. toctree::
   :maxdepth: 2
   :caption: Tutorial

   tutorial/setup
   tutorial/run
   tutorial/analysis

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.. toctree::
   :maxdepth: 2
   :caption: Examples

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   examples/bpt1/bpt1
   examples/malecoli/malecoli