CHANGELOG

<a name="0.0.18"></a>
## <small>0.0.18 (2018-04-24)</small>

* *: Fix bug during pdf generation in analysis command; Added analysis example for bpt1 ([e159414](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e159414))
* Added casp rr support when there is no header (pfrmatrr) ([d9d7349](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d9d7349))
* Added coverage report in generated ci files ([476478c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/476478c))
* Added future to setup ([6540e57](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6540e57))
* added logo files ([9a4d273](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9a4d273))
* Added new prefix option for analysis command ([d00926a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d00926a))
* Added rst contributing file ([0b807b0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0b807b0))
* Added static files ([93c6e41](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/93c6e41))
* Added template files ([91485ec](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/91485ec))
* Automatic version tag in PKG_INFO ([ecf63ec](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ecf63ec))
* Bug revision within get_version ([c9df814](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c9df814))
* Changed aria header docstrings in rest format ([feb5e17](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/feb5e17))
* Changed README ([69d770f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/69d770f))
* commitlint support for git message formatting ([4d73e55](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4d73e55))
* Corrected AriaPeak format ([f352612](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f352612))
* Corrected coverage report parameters ([c775351](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c775351))
* Dependencies section in installation doc ([c7a543a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c7a543a))
* Finished installation doc ([e3af353](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e3af353))
* Fix issue #21 ([5b93f73](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5b93f73)), closes [#21](https://gitlab.pasteur.fr/bis-aria/Ariaec/issues/21)
* Installation doc revision, a command was missing in pip installation instructions ([26193c4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/26193c4))
* Moved get_version again due to import errors with pip installation ([018524c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/018524c))
* Moved get_version function ([4705325](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4705325))
* Path revision in scientific/PDB docstring ([b7ed251](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b7ed251))
* Previous bug revision was wrong ... ([ec2560e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ec2560e))
* Removed old readme files ([156ee0a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/156ee0a))
* removed reference to bootstrap theme within sphinx documentation ([e78370a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e78370a))
* Revert "Update Dockerfile" ([b4598c3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b4598c3))
* Revised documentation ([705ef9e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/705ef9e))
* Solved issue within analysis command. If the native and ensemble segids didn't correspond, the viola ([5071ec0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5071ec0))
* Update .gitlab-ci.yml ([ef27cca](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ef27cca))
* Update .gitlab-ci.yml ([33f9575](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/33f9575))
* Update .gitlab-ci.yml ([0fd6683](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0fd6683))
* Update .gitlab-ci.yml ([9ddd3ba](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9ddd3ba))
* Update .gitlab-ci.yml ([6a84129](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6a84129))
* Update .gitlab-ci.yml ([ca8c15e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ca8c15e))
* Update .gitlab-ci.yml ([8e679df](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8e679df))
* Update .gitlab-ci.yml ([7d37392](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/7d37392))
* Update CONTRIBUTING.md ([3c6b9a2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3c6b9a2))
* Update CONTRIBUTING.md ([64f0a8a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/64f0a8a))
* Update CONTRIBUTING.rst ([e000d1e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e000d1e))
* Update Dockerfile ([c650124](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c650124))
* Update Dockerfile ([da41768](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/da41768))
* Update Dockerfile ([ae12b86](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ae12b86))
* Update README.md ([6ee017a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6ee017a))
* Updated API doc ([6c1b229](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6c1b229))
* Updated changelog ([6c72ac0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6c72ac0))
* updated changeolog ([237c8bd](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/237c8bd))
* Updated configuration ([c374466](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c374466))
* updated contributing ([7f9ccda](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/7f9ccda))
* Updated doc ([8d44d75](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8d44d75))
* Updated docs tree & moved examples folder ([ad95b08](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ad95b08))
* Updated documentation content ([a249ee6](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a249ee6))
* Updated general documentation (git guidelines) ([9ee7b2f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9ee7b2f))
* Updated gitignore file ([476be05](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/476be05))
* Updated installation doc ([3a18457](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3a18457))
* Updated installation doc ([2f0f443](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/2f0f443))
* updated logo file ([774713a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/774713a))
* Updated README.rst and installation doc ([aa67392](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/aa67392))
* Updated toctree & ariaec setup command within sphinx documentation ([3ee3140](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3ee3140))
* docs: Added bpt1 setup in examples ([a76abff](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a76abff))
* docs: Added link to example archive in docs ([9ec966b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9ec966b))
* docs: Added MALE_ECOLI example data ([4877131](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4877131))
* docs: updated changelog ([ceececc](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ceececc))
* docs: updated changelog ([95d3f62](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/95d3f62))
* docs: Updated changelog (removed old tags) ([a59416d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a59416d))
* feat: Automatic changelog ([23e095b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/23e095b))
* fix: wrong installation order in dockerfile for husky npm module ([c83c314](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c83c314))



<a name="0.0.17"></a>
## <small>0.0.17 (2018-03-23)</small>

* Add .gitlab-ci.yml ([ad3cfd2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ad3cfd2))
* Add changelog ([20104b7](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/20104b7))
* Add CONTRIBUTING file ([1b30e83](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1b30e83))
* Add license ([7eda697](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/7eda697))
* Add new file ([926cbc3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/926cbc3))
* Added ariaproject support to extract supplementary data ([49c72d3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/49c72d3))
* Added configuration file converter ([0db97d4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0db97d4))
* Added empty test files ([ee28ce7](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ee28ce7))
* Added PKG-INFO file ([95c99ce](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/95c99ce))
* Added possibility to chose distance restraint file in analysis command ([3c803b3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3c803b3))
* added short reminder ([e9599c1](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e9599c1))
* Added support of ss2 psipred format ([4edb53c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4edb53c))
* Adding example files ([21b3f0b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/21b3f0b))
* Also update sequence section from ARIA project file ([bccbaeb](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/bccbaeb))
* aria integration update ([5dade88](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5dade88))
* Bug revision during loading of external settings ([3441970](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3441970))
* Bug revision in iniconv ([5087010](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5087010))
* Bug revision in maplot (removed old args) ([9f09f55](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9f09f55))
* Bug revision when giving wrong file type ([c730770](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c730770))
* Bug revision when updating sequence field ([a009eaf](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a009eaf))
* Bug revision with no filter option ([0ced19b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0ced19b))
* Bug revision, wrong import in conversion ([9f391ee](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9f391ee))
* Bug revision: handle missing files in previous template versions ([52ef164](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/52ef164))
* Bug revision: Since there is nan values instead of null when reading a scoremap, maplot no longer wo ([f551fc0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f551fc0))
* Bug revision: wrong call when reading seq file instead of fasta ([4cb7b31](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4cb7b31))
* Bug revision: wrong index in filtering step......... ([bde5974](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/bde5974))
* Bug revision: wrong loop in analysis ([82cf56e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/82cf56e))
* Can data from an existing aria project file ([11daeaf](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/11daeaf))
* Changed default segid ([040fe74](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/040fe74))
* changed entry points location ([14d82a9](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/14d82a9))
* Changed secondary structure args in setup as optional args ([fcff1b2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/fcff1b2))
* Changed setup.py ([8d42961](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8d42961))
* Conkit reader now supported in conbox.reader. Close #4 ([74b5ef6](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/74b5ef6)), closes [#4](https://gitlab.pasteur.fr/bis-aria/Ariaec/issues/4)
* Contacts can now be selected using a percentage ([f3835df](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f3835df))
* ec file are now optional ([fcde165](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/fcde165))
* First attempt to change aria nested tree for setuptools installation ([912fc3b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/912fc3b))
* gui behaviour seems ok ([956ca75](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/956ca75))
* Ignore example files for dev ([2852dc1](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/2852dc1))
* Implementation of a new filtering step checking for unassigned contacts if amino acid information is ([2459181](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/2459181))
* import revision in aria part ([43469d7](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/43469d7))
* merging not fully functionnal ([6c3162f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6c3162f))
* Missing dependency for ariaec in singularity recipe ([c6ef2b4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c6ef2b4))
* No filter option in maplot ([5e1e9b4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5e1e9b4))
* path revision in aria2 script ([4c930f8](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4c930f8))
* pkg_resources revision for cns ([78090bc](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/78090bc))
* Preparing for aria integration ([470859b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/470859b))
* Put old readme file since sphinx documentation is not finished ([a8c1e63](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a8c1e63))
* Refactored part of ariaecsettings ([48ea9d1](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/48ea9d1))
* Refactored some parts in conbox + beginning of seqrange option ([74bee78](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/74bee78))
* removed a print .... ([58314ae](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/58314ae))
* Removed annoying warnings with metadata attributes in protmap.py ([71905c3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/71905c3))
* Secondary structure restraints are now optional ([e0b18b9](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e0b18b9))
* Singularity file added ([ea99f88](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ea99f88))
* small syntax revision ([40e7a07](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/40e7a07))
* small syntax revision ([62d1c7c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/62d1c7c))
* Solved bug due to % syntax in n_factors ([7fde3a0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/7fde3a0))
* syntax revision for prefix option in maplot ([36fda83](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/36fda83))
* Update .gitlab-ci.yml ([438e268](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/438e268))
* Update .gitlab-ci.yml ([6d775d4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6d775d4))
* Update .gitlab-ci.yml ([6e62d0f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6e62d0f))
* Update .gitlab-ci.yml ([80cd86c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/80cd86c))
* Update .gitlab-ci.yml ([904194f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/904194f))
* Update .gitlab-ci.yml ([fc10d09](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/fc10d09))
* Update .gitlab-ci.yml ([d46d7e8](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d46d7e8))
* Update .gitlab-ci.yml ([1a11d55](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1a11d55))
* Update .gitlab-ci.yml ([1e378a3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1e378a3))
* Update .gitlab-ci.yml ([b4fd0d4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b4fd0d4))
* Update .gitlab-ci.yml ([b865530](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b865530))
* Update .gitlab-ci.yml ([d462e14](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d462e14))
* Update .gitlab-ci.yml ([77e2689](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/77e2689))
* Update .gitlab-ci.yml ([12b17ae](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/12b17ae))
* Update .gitlab-ci.yml ([071c954](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/071c954))
* Update .gitlab-ci.yml ([600d96c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/600d96c))
* Update .gitlab-ci.yml ([3e9e043](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3e9e043))
* Update .gitlab-ci.yml ([fb7dd46](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/fb7dd46))
* Update .gitlab-ci.yml ([00667cc](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/00667cc))
* Update .gitlab-ci.yml ([0c84592](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0c84592))
* Update .gitlab-ci.yml ([3a9e6ca](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3a9e6ca))
* Update .gitlab-ci.yml ([fedaf61](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/fedaf61))
* Update .gitlab-ci.yml ([a8336c4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a8336c4))
* Update .gitlab-ci.yml ([68c3209](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/68c3209))
* Update .gitlab-ci.yml ([00ad7f2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/00ad7f2))
* Update .gitlab-ci.yml ([3b4b205](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3b4b205))
* Update .gitlab-ci.yml ([3bbaf04](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3bbaf04))
* Update .gitlab-ci.yml ([715ab24](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/715ab24))
* Update .gitlab-ci.yml ([90be395](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/90be395))
* Update .gitlab-ci.yml ([cc99435](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/cc99435))
* Update .gitlab-ci.yml ([c956430](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c956430))
* Update .gitlab-ci.yml ([9a39227](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9a39227))
* Update .gitlab-ci.yml ([d416946](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d416946))
* Update .gitlab-ci.yml ([b226b94](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b226b94))
* Update .gitlab-ci.yml ([f3636ed](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f3636ed))
* Update .gitlab-ci.yml ([8d867ef](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8d867ef))
* Update .gitlab-ci.yml ([001eb5b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/001eb5b))
* Update .gitlab-ci.yml ([ec9941c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ec9941c))
* Update .gitlab-ci.yml ([f17efc6](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f17efc6))
* Update .gitlab-ci.yml ([a41dbe4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a41dbe4))
* Update .gitlab-ci.yml ([829160a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/829160a))
* Update .gitlab-ci.yml ([9019d4c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9019d4c))
* Update .gitlab-ci.yml ([d78ff48](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d78ff48))
* Update CONTRIBUTING.md ([594d24b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/594d24b))
* Update CONTRIBUTING.md ([f1fb306](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f1fb306))
* Update Dockerfile ([4498f35](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4498f35))
* Update Dockerfile ([ef2abb0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ef2abb0))
* Update Dockerfile ([19e082f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/19e082f))
* Update Dockerfile ([5f8e2ba](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5f8e2ba))
* Update Dockerfile ([5263bca](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5263bca))
* Update Dockerfile ([6857a24](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6857a24))
* Update Dockerfile ([0a24f4c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0a24f4c))
* Update Dockerfile ([dde69c7](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/dde69c7))
* Update Dockerfile ([bea2af9](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/bea2af9))
* Update Dockerfile ([7620522](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/7620522))
* Update Dockerfile ([1585092](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1585092))
* Update Dockerfile ([7722337](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/7722337))
* Update Dockerfile ([01f2d7a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/01f2d7a))
* Update Dockerfile ([4dfa22f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4dfa22f))
* Update Dockerfile ([084f23a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/084f23a))
* Update Dockerfile ([fbdee64](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/fbdee64))
* Update Dockerfile ([bdb46d3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/bdb46d3))
* Update README.md ([f5a30f6](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f5a30f6))
* Update README.md ([c67c406](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c67c406))
* Update README.md ([2394807](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/2394807))
* Update README.md ([491a281](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/491a281))
* Update README.md ([de2b1c4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/de2b1c4))
* Update README.md ([a620daf](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a620daf))
* Update README.md ([3c4b415](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3c4b415))
* Update README.md ([5e81779](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5e81779))
* Update README.md ([ef36131](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ef36131))
* Update README.md ([f87b087](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f87b087))
* Update README.md ([bd49362](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/bd49362))
* Update README.md ([e2b95e0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e2b95e0))
* Update setup.py ([1e94cad](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1e94cad))
* Update setup.py ([a4ff2ae](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a4ff2ae))
* Updated doc ([3e4142d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3e4142d))
* Updated DTD file ([5244de6](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5244de6))
* Updated generated files in analysis step ([c52565a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c52565a))
* Updated help inside singularity recipe ([e41ddb5](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e41ddb5))
* Updated installation process ([7704234](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/7704234))
* updated sphinx doc (make html call) ([24585f0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/24585f0))
* Updated sspred parser in order to support ss3 file format ([91ebaf0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/91ebaf0))
* Updated tempate files ([76fa394](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/76fa394))
* Updated violation file in analysis step (avoid putting None values in the csv file) ([475afb9](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/475afb9))
* wrong condition in maplot when there is only reference map ([f988490](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f988490))



<a name="0.0.16"></a>
## <small>0.0.16 (2017-06-01)</small>

* Changed deprecated functions with panda in pdbstat part ([ceb1d13](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ceb1d13))
* Updated violation analysis if clusters ([6c7a379](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6c7a379))



<a name="0.0.15"></a>
## <small>0.0.15 (2017-05-31)</small>

* Cleaner version of setuptools installation ([ec11aa3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ec11aa3))



<a name="0.0.14"></a>
## <small>0.0.14 (2017-05-30)</small>

* Bug revision: removed hard coded lines... ([57f42c7](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/57f42c7))



<a name="0.0.13"></a>
## <small>0.0.13 (2017-05-30)</small>

* Add README file ([b987c0f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b987c0f))
* Added --no-filter option in setup command ([5a60a1e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5a60a1e))
* Added cullpdb files in package_data attribute (setup.py) ([49b450f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/49b450f))
* Added data folder ([bca5553](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/bca5553))
* Added docstrings in default config file ([0949374](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0949374))
* Added ec2aria command line for backward compatibility ([89c0873](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/89c0873))
* Added neighbor search ([38db34d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/38db34d))
* Added new flags for restraint building. Pair_product filters atom pair list for each restraint to th ([68bd460](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/68bd460))
* Added pdbdist cmd ([284f897](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/284f897))
* Added plmc and plm as contact map types ([330e140](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/330e140))
* Added project template 2.3.6 (new clustering field) ([d928bdf](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d928bdf))
* Added scoring tag support ([c2e2196](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c2e2196))
* Added seed for random contact selection (e.g.: with native contact) ([c685576](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c685576))
* Added some comments for future implementations ([ce3a45d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ce3a45d))
* Added sphinx documentation files generated with sphinx-apidoc ([3696334](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3696334))
* Added svnignore file ([b02decd](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b02decd))
* Added verbosity option ([ae29b7b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ae29b7b))
* Avoid disordered atoms for the moment in pdbdist (not compatible with seen matrix index actually) ([83753ba](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/83753ba))
* Bug revision in ResAtmMap when calling reduce method ([8c85936](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8c85936))
* Bug revision pdbviol argparse command ([977eefd](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/977eefd))
* Bug revision: avoid raising of matplotlib event error for contactmap tool ([814fbdc](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/814fbdc))
* Bug revision: avoid sampling when using all contacts ([a9b93ba](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a9b93ba))
* Bug revision: conservation score ignored if missing field ([b2b22a4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b2b22a4))
* Bug revision: filter.out merged when there is more than one contact file... ([a36c0e2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a36c0e2))
* Bug revision: regex for plm contacts revised ([22c7124](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/22c7124))
* Bug revision: reset contribution id at each new restraint ([5db6b92](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5db6b92))
* catch potential errors with retrieve_pdb function ([aaa1441](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/aaa1441))
* Changed defaults options in config file ([923cf82](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/923cf82))
* Changed delimiter in pdbdist output file ([8526fe4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8526fe4))
* Changed filter steps in pdbdists ([1960099](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1960099))
* Changed infra dir for setup (removed others folder) ([f9a80da](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f9a80da))
* Contributions are now always in the same order when generating xml distance file ([e4f1d0d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e4f1d0d))
* Create subfolders related to molecule and datas in tmp root ([0c139e8](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0c139e8))
* Faster subdist computation in pdbdist ([161d26e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/161d26e))
* Finalized first version of pdbviol command ([3e10b6c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3e10b6c))
* First step to modular restraint generation ([a4d1efa](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a4d1efa))
* First step to pdbdist based distance restraints ([bff274b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/bff274b))
* First steps for pdbstat parallelization ([c72944d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c72944d))
* force file format to pdb when downloading files in pdbdist section ([76b6712](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/76b6712))
* Implemented copy method for all protein maps ([3fb57a2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3fb57a2))
* mapreport format revision ([a1c17f2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a1c17f2))
* Maptype checker updated -> show error msg only after 2nd line ([b0a339d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b0a339d))
* mmCIF support in downloading process (pdbdist command) ([79b21dd](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/79b21dd))
* Moved data folder for testing ([12ff9a2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/12ff9a2))
* n_factor in configuration file accept 'all' as a valid parameter now ([5cef0cd](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5cef0cd))
* New template for avg_exponent ([0207045](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0207045))
* Parallelization process done on pdbstat (could be improved) ([8de0dde](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8de0dde))
* PCA projection done in ensemble analysis part ([e11080d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e11080d))
* PCA projection of clusters done ([52be20e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/52be20e))
* Pdbdist command functionnal ([997944e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/997944e))
* pdblist moved to pdbdist init ([632ec39](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/632ec39))
* Pdbqual command added ([994315a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/994315a))
* PDBStat command with GMM ([f4ccfd4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f4ccfd4))
* Pdbstat distance type functionnal ([c6e1807](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c6e1807))
* pdbviol analyze with ensemble of previous iteration in the same way as aria ([2d3528a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/2d3528a))
* pep revision ([6352972](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6352972))
* PEP8tized base, commands and econverter ([d5c35c5](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d5c35c5))
* Redefined several commands in order to be more explicit ([a63afa9](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a63afa9))
* Removed bin folder and moved ec2aria command into entry point ([5f394e6](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5f394e6))
* Removed pyc files... ([6ecb9c5](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6ecb9c5))
* Removed update of host command ([53035e9](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/53035e9))
* Second step for parallelization of pdbstat (using pathos and tqdm) ([d2531c8](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d2531c8))
* Second step to modular restraints ([998a96f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/998a96f))
* Smarter RegexFile class (check if the file exists or not in package data) ([d33cbb7](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d33cbb7))
* SsAaAtmMap implementation ([5f5715a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5f5715a))
* Start writing pdbviol cmd ([8fcdfd6](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8fcdfd6))
* Starting tbl2xml cmd dev ([661f02a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/661f02a))
* tbl2xml command functionnal ([19fef77](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/19fef77))
* Toggle on capture of warnings with dssp inside logger ([f855d81](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f855d81))
* Update contactmap settings ([e62d90e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e62d90e))
* Update ensemble pickling in ensemble analysis ([84f96cf](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/84f96cf))
* Update host command for slurm log file ([f00f9e1](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f00f9e1))
* Update host command for slurm log file (logger revision) ([c51fa8e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c51fa8e))
* Update host command for slurm log file (logger revision) ([664e666](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/664e666))
* Update README.md ([641978d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/641978d))
* Updated aa conversion in pdbdist ([9f30a32](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9f30a32))
* Updated config options in pdbstat ([567944c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/567944c))
* Updated docstrings in converter ([12e36a2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/12e36a2))
* Updated doctstring in contactmap section and changed naming convention for output files ([cbf6c79](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/cbf6c79))
* Updated documentation inside aria_ec.ini file ([87d4d52](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/87d4d52))
* Updated formatting function for setting parser (try to get absolute path if file field) ([d5b7502](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d5b7502))
* Updated host_command modification for scheduler output ([0becc74](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0becc74))
* Updated host_command modification for scheduler output. Only print a warning now (will lead to an er ([7765d37](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/7765d37))
* Updated logger in pdbdist ([ced6775](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ced6775))
* Updated logger in setup step ([1dc5e8e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1dc5e8e))
* Updated output error file for job manager in host_command ([64eb7c5](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/64eb7c5))
* Updated pdbdists data files and intra ss distance analysis ([65aaebe](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/65aaebe))
* Updated protein blocks index in pdbdists command ([f2195c8](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f2195c8))
* Updated README file ([2d3a27a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/2d3a27a))
* Updated secondary structure index function ([4bb7202](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4bb7202))
* Updated settings ([3531d1f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3531d1f))
* Updated setup for pdbstat with ss information ([76d84b0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/76d84b0))
* Updated setup for targetdistmap part 1 ([247ce2f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/247ce2f))
* Updated setup.py file (same structure as in aria setup file) ([2d17bbd](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/2d17bbd))
* Updated several doctypes & config file ([41e1ac0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/41e1ac0))
* Updated some fields in violation file ([ff1880f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ff1880f))
* Updated sphinx documentation ([68c15ad](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/68c15ad))
* Updated sphinx documentation v2 ([5577a98](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5577a98))
* Updated sphninx documentation ([c6f5a11](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c6f5a11))
* Updated string formatting in mapreport ([baed6c5](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/baed6c5))
* Using manager to share pdbdistances ([4b85864](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4b85864))



<a name="0.0.12"></a>
## <small>0.0.12 (2016-08-02)</small>

* Add new section in ariaec.ini setup ([72674c8](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/72674c8))
* Added exponent parameter ([0fe842e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0fe842e))
* Added host_executable option in config file ([6897527](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6897527))
* Added native_reliable option in config file ([b1e477c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b1e477c))
* Added sequence information inside contactmap report ([c942dd3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c942dd3))
* Addign sigma mode parameter in aria project templates ([cab261f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/cab261f))
* Bug fixe: generated ssdist restraints were empty ([a290852](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a290852))
* Bug Fixe: N_factor convert to int during mapfilter step. Float values wasn't taken into account befo ([171a1ae](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/171a1ae))
* Bug fixe: wrong conditionnal test when creating output directory ([02494b4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/02494b4))
* Bug revision: dealing with empty contactlist file in maplot ([603f202](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/603f202))
* Changed again default cutoff in contact definition section. Lower treshold fit better when using oth ([4239f50](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4239f50))
* changed default cutoff to 8 in contactdef. We want to give the highest precision values as in CASD.. ([bdb256a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/bdb256a))
* Def_upper_bound set to 5 A ([082a369](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/082a369))
* Error printing revision in ariaec/setup.py ([9c17de1](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9c17de1))
* Removed working directory path in .ini file. ariaproject now generated using outdir command line arg ([f2ec107](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f2ec107))
* Simplified temp_root path since too many contact map types give too long path (> 80 char) ([232150e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/232150e))
* Since cns do not like long path, project_name correspond only to molecule name now ([f9e6ef8](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f9e6ef8))
* Since cns do not like long path, project_name correspond only to molecule name now v2 ([2bedc48](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/2bedc48))
* syntax modifications (report file name) ([92f7149](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/92f7149))
* Syntax update according to pylint res ([e38c758](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e38c758))
* Trouble with capturing and unicode syntax with python 3 compatibility... ([1452fe8](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1452fe8))
* Trouble with capturing and unicode syntax with python 3 compatibility... ([287cc73](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/287cc73))
* Update hbdb potential tag ([4108c51](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4108c51))
* Updated to python 3.5 syntax ([6767d22](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6767d22))
* Using mako library to generate dynamically iteration tag in the project template ([ea0d92d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ea0d92d))



<a name="0.0.11"></a>
## <small>0.0.11 (2016-03-02)</small>

* Bug fixe: wrong atom list when pair_list set to all (add terminal atoms) ([1cf6e97](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1cf6e97))



<a name="0.0.10"></a>
## <small>0.0.10 (2016-03-01)</small>

* Add max_contribution in setup config ([69784cf](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/69784cf))
* Bug fixe: only heavy atoms when atom list set to all + upp_bound not fixed when ambig_restraint turn ([8d07798](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8d07798))
* Reorganized/renamed output files in setup section ([5978a31](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5978a31))
* Syntax revision in generated filter.out ([fa3f608](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/fa3f608))



<a name="0.0.9"></a>
## <small>0.0.9 (2016-02-15)</small>

* Bug Fixe: error when writing boolean values aria project file (yes/no only accepted) ([9d6b572](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9d6b572))
* Changed aria_ec.ini default contact_def (only default treshold) ([8dc289a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8dc289a))
* Config filename changed in bbconv section ([3e7e1ca](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3e7e1ca))
* Flush before each maplot ([57556cc](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/57556cc))
* Moving nb_c selection criteria in mapfilter object ([29f9581](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/29f9581))
* onlyreport option ([7708a0c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/7708a0c))
* Setting position filter mandatory in contactmap section (have to do the same in setup section) ([3108a9c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3108a9c))



<a name="0.0.8"></a>
## <small>0.0.8 (2016-02-03)</small>

* Bug fixe: error pdb contact list ([db56bc6](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/db56bc6))
* Bug fixe: error pdb contact list ([f57d7d4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f57d7d4))
* Bug Fixe: error pdb contact list ([dec91ec](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/dec91ec))
* Bug Fixe: error reading pdb contactlist file during check_maptype step ([dbcbbe4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/dbcbbe4))
* Bug Fixe: error using pdb contact file generated from ariaec ([3c421af](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3c421af))
* Bug fixe: error when scoremap doesn't exist for report file (contactmap section) ([8e4a6f6](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8e4a6f6))
* Bug Fixe: remove duplicates in generated contact files ([1d26bd0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1d26bd0))
* pep8tized ([6dba452](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6dba452))
* pep8tized v2 ([dc8fc3f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/dc8fc3f))
* pep8tized v3 ([402cdec](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/402cdec))
* removed ariaec/econtacts.py ([c783cfa](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c783cfa))
* removed ariaec/econtacts.py ([c07a495](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c07a495))
* Reordering metrics in report file ([f57fc58](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f57fc58))
* syntax revision for contactmap logger ([fb04f44](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/fb04f44))
* syntax revision precall plot ([64042ac](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/64042ac))



<a name="0.0.7"></a>
## <small>0.0.7 (2016-01-27)</small>

* Add new formats (metapsicov_stg1/2,pconsc1/2) ([cbd0b94](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/cbd0b94))
* Bug fixe: Missing parameter desc in pdb maps after reduce call. Report file implementation ([d57cf95](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d57cf95))
* Changed infra call;New infra functions (ariaecsettings);infra for contactmap section ([8f85025](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8f85025))



<a name="0.0.6"></a>
## <small>0.0.6 (2016-01-21)</small>

* Bug fixe: issue when launching contactmaplot on erc cluster (Tk error) ([159556f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/159556f))



<a name="0.0.5"></a>
## <small>0.0.5 (2016-01-21)</small>

* Bug fixe: save_fig flag doesn't work with refmaplot ([f31ff4b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f31ff4b))
* Change matplotlib to pdf output (should solve issue when x-server is disconnected) ([cff3bc2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/cff3bc2))
* Change matplotlib to pdf output (should solve issue when x-server is disconnected) ([c5ddfa1](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c5ddfa1))
* Issue with using contactmap on the cluster (plt.subplot fail) ([f2ac0b3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f2ac0b3))
* Update logger infos in contactmap section ([87fbb59](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/87fbb59))



<a name="0.0.4"></a>
## <small>0.0.4 (2016-01-20)</small>

* Bug fixe: wrong arguments for contactmaplot... ([381475a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/381475a))
* Prefix argument (contactmap) ([22e21af](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/22e21af))
* Version number following git tag system ([bf6fec2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/bf6fec2))
* Version number following git tag system ([850c70a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/850c70a))



<a name="0.0.3"></a>
## <small>0.0.3 (2016-01-19)</small>

* Bug fix: sc_sc contactdef ignored ([50b2839](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/50b2839))



<a name="0.0.2"></a>
## <small>0.0.2 (2016-01-18)</small>

* Bug fixe: error when using only one contactfilter ([ac09277](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ac09277))



<a name="0.0.1"></a>
## <small>0.0.1 (2016-01-18)</small>

* bug fixes when template or contactfilter fields are empty in ini file ([34b074a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/34b074a))



<a name="0.0.0"></a>
## 0.0.0 (2016-01-18)

* Initial commit ([35d8304](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/35d8304))