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## de Novo Ambiguous Restraints for Iterative Assignment

**A pipeline for automated de novo contact map assignment**

[![pipeline status](https://gitlab.pasteur.fr/bis-aria/ariaec/badges/master/pipeline.svg)](https://gitlab.pasteur.fr/bis-aria/ariaec/commits/master)
[![coverage report](https://gitlab.pasteur.fr/bis-aria/ariaec/badges/master/coverage.svg)](https://gitlab.pasteur.fr/bis-aria/ariaec/commits/master)
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[![documentation](https://img.shields.io/badge/docs-latest-blue.svg)](http://bis-aria.pages.pasteur.fr/ariaec)
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[![aria paper](https://img.shields.io/badge/DOI-10.1093%2Fbioinformatics%2Fbtl589-blue.svg)](https://doi.org/10.1093/bioinformatics/btl589)

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**ariaec**  is a [Python](https://www.python.org/) library that provides *de novo* structure prediction
based on [ARIA](http://aria.pasteur.fr/) pipeline and evolutionary restraints inferred from co-evolution.
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The package add a new command line interface aside the usual ARIA commands in
order to convert data, setup an ARIA project with evolutionary restraints,
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analyze contact maps or protein structures or generate statistics from a culled
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list of PDB files.


## Quick Start

Be sure to check if the following packages are correctly installed with
your python installation or virtual environment.

- **pip** (>= 9.0)
- **setuptools** (>= 18.0)
- **cns-solve** (1.21)
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- **pbxplore** (>= 1.3.8)
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Then the easiest solution is to call the **pip** command below :

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   `pip install --user git+http://gitlab.pasteur.fr/bis-aria/ariaec.git`
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For more information about installation and usage, please refer to the
[ARIAEC documentation](http://bis-aria.pages.pasteur.fr/ariaec)

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**ARIA contains patches for CNS-solve which needs to be compiled after the installation. Please follow [post installation instructions](http://bis-aria.pages.pasteur.fr/ariaec/installation.html#post-installation-instructions).**

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## Contributing

Please read [guidelines for contributing](https://gitlab.pasteur.fr/bis-aria/ariaec/blob/master/CONTRIBUTING.md) for any
suggestions or bug report.