From 22e21aff92069803de38c38e0f96df80511c56a3 Mon Sep 17 00:00:00 2001 From: fabrice <fabrice.allain@pasteur.fr> Date: Tue, 19 Jan 2016 13:48:06 +0100 Subject: [PATCH] Prefix argument (contactmap) --- ariaec/commands.py | 2 ++ ariaec/commands.pyc | Bin 9785 -> 9863 bytes ariaec/maplot.py | 2 +- ariaec/maplot.pyc | Bin 4767 -> 4802 bytes 4 files changed, 3 insertions(+), 1 deletion(-) diff --git a/ariaec/commands.py b/ariaec/commands.py index 5810c90..d6a310c 100644 --- a/ariaec/commands.py +++ b/ariaec/commands.py @@ -179,6 +179,8 @@ class AriaEcCommand: parser.add_argument("--ssidx", dest="ssidx", action="store_true", default=False, help="Use secondary structure index") + parser.add_argument("--prefix", dest="prefix", default="", + help="File name") return parser def create_settings(self): diff --git a/ariaec/commands.pyc b/ariaec/commands.pyc index 147e2c4e6312fba904fbbfb1375c8b42188f957d..d08fd5a0a15f782f901970938d04ac47f6bafbcb 100644 GIT binary patch delta 261 zcmdn#)9%a8{F#?a-C*8Ec4rAj-pPIZDwFdiW-uyE=8!a2%3@|nkz+^^Vn~r^NRebn zQD8`6Wk^wEXl7()tYKmZ)==JTC&|a8UChD2z@V#JP?VaMSy95qz`y`yGB7YO6mv2# zFt}yrq$=bk=B7^ek>16qF_~RPol#=5w#;!R#$A&?%XP68FfcF#6-{oIZ(uw<nMEO( ztqLSiJvmmPmhr;m+Xw*@#X82TlW!~dakGF_K$Y<*)iK`O+^wX~$XGIYx3W5S9+Ko+ h<wcANlP9PcGS*K%q%w=KU~;VLRrYN>Ou~%(i~xOCMDhRt delta 193 zcmZqo-RZ;5{F#@_?Ax4;?9LKQ?-(Zc^D9rzmzcpQH<?4ym^oNOesioO9}}~m2FK(a zaka_&r6)3~Ob(P$-&`Yego$y-WJmcfwmb#~hM<DU7v&omPfiX}2xhAQ2~<vAtx(H& zZZe~iA2%yV04my~SjTvIGNTe)S(H*8<MquqmGl`IizaibsB`BaskT;G#3(oUo{Ax3 Y?PLMfS&Vs;SF2uS-@?Nr%*f9O0IQ2PPyhe` diff --git a/ariaec/maplot.py b/ariaec/maplot.py index 2be61d1..5ca7ea7 100644 --- a/ariaec/maplot.py +++ b/ariaec/maplot.py @@ -36,7 +36,7 @@ class AriaEcContactMap(object): indent=4)) # ----------------------------- Input -------------------------------- # self.outprefix = get_filename(self.settings.contactmap.args.get( - "seq", None)) + "seq", None)) + self.settings.contactmap.args.get("prefix", "") # Load Sequence file self.protein.set_aa_sequence(self.settings.contactmap.args.get("seq", None)) # Load secondary structure prediction file diff --git a/ariaec/maplot.pyc b/ariaec/maplot.pyc index 9309021709176257fae3c5271192e2a9f44936cd..13464f4d3d08ea40bcdb2c75f5d3a29295dc2a59 100644 GIT binary patch delta 1143 zcmbQQdPtR>`7<xqQT=%v*>5m2hE9IKTqc&q!jQ$vkj2iB#mSJu#*o6!(9FajJ~^1h zLWF}svgj5=2Ll604Ie`m8$$}m<oPTr@|+AQ3?OASj0`DUFa>Z!xF$bhQJE~q%A=2L zG%rIlBSQ)wSTzqr3O|?uQNRY`N~Q=*c4Rda5M;<^Vko-LSi-=NCB~2<G`We@oLv~C zx!7v*0agWJ5r!IOhAdfz6j87d+zcsVlRvYnGR~MR$)>I@4pJ%7%*as70+yC!NReQW ztYu|rXJANUWJr-@Xk%bVQJ<X7rp+ijc`}=3y%%#0D?^q#Ly9azmKs<OH$x3OLmCsv zq!clR8V-hLMn*=EA`J!zKSdO~>KZnNUIr${!mUhs3}BPwK_*FpLRJE78UsT%CqvOY z7EqW%<=i+KQsgisAprx46o}`aF(WjAyp*MhWJ8MF<VJQe4mk$NEG>o<`N{LyW$HoR zhC~j;rWBYgLy0y+GXrBSH$x2<F&^h)$kJh`VP&Y{W~kw0NKpXWD+yvqrpSW~g9J)5 zGc!1lbV0_Zh?;>FD}sVAMG340;wLt6LQ?|!SQ$fHd2#`VmW>K1*wPspQdGeTq!`i} z8Jd}xni&~DVT%X{^nkTtOOc&?jl&qz?-C4>S%wS{=MHMWTjKXSC|4LUq^N-cNDLYt z;VBFZ!5SKq6}im$*%%lY3W`$GGAn{O85kHghjSS-GOBOx=I&wS)@EQ}2+{!&x|5Z7 z%_P-9OkM^Ch7uMA28P6<^x`09kdVgYLf#{6Dj=rnW@|nhMov`_TZ(~!VR9S)WJc}H sQUcYCvX&s7><kPHIr-`7nR)3YV7n9ZQWA@ULMLw$3}7^$%q%nq0MxbB?f?J) delta 1071 zcmX@4I$xEY`7<xq2Hm+E*>5m2+Dv}HTsAqM#Z-iiL9*x|Lk9yx77IfbA43)!LkipE z9V{yH><lRk49!doHH-`?954l}3|Z_9S)2?h9Fu>usIYS~G&3@!a82f8l@;e<Na00N z#s=a_rtnRUVl@=tXUJw^C_2Vi!oZLv#*iW~c{Zy#yC6t&vEt;LtO~+H3^mLQS+Wc% z!eAq~8B#<h^RTHh)=xHKQ&$%SsT65uWT<5UOG`4Oh%rdkvNE(YFr+auq=+-LF)*a4 zPHte+W|W@%o<nBx2{v8}L*^P*hAef46lsPmHLyNzh8lK;G$xQ~DIyFt91P8jjEo>f z8VnGAiZDZp^kiOk>H0ZLc?@7Z@*q8uATNu7^)WDHb21cNWdVg4LQV!lj)fr$9#{~c zo@GYp0l7a*6Ul-U83xH37EpNCaxru;2r^_r3<rs4X)&b8PTs*TQxEbrNE$<yp+uXZ znSrsEo1un_7(a6{Wa%)}urkzeGt_W0q{x9?A_-zhrpST}gM>#jGc!1RbV0_Z2%CWw z%Y#BLMFFe@;!8Ggl28DLfg*;u;^a;aEgL0JIHof)q$q<GNHL@{GBh(WH8V0W7S3Tp zgbaE}E3>75qSP4E?_vy+S%wS{=MHMWTjKXSC{q|Qq^N)bNDLYt;VBFZ!5V6lt+>oL zH*y&<GOBIf!rjBjt;N8=5Tp$vbS8WAnn|jGn7j-O3?(cK3=D}y>BT|JAR+b1vv`lN zDTA0Qn^X8~82ME|ir5$!7z&C~(=sb2ujHT1D74vDpqi1<V)9NwX~vMrR|NwY%_ge} G%>e+SD9Ta* -- GitLab