From 22e21aff92069803de38c38e0f96df80511c56a3 Mon Sep 17 00:00:00 2001
From: fabrice <fabrice.allain@pasteur.fr>
Date: Tue, 19 Jan 2016 13:48:06 +0100
Subject: [PATCH] Prefix argument (contactmap)

---
 ariaec/commands.py  |   2 ++
 ariaec/commands.pyc | Bin 9785 -> 9863 bytes
 ariaec/maplot.py    |   2 +-
 ariaec/maplot.pyc   | Bin 4767 -> 4802 bytes
 4 files changed, 3 insertions(+), 1 deletion(-)

diff --git a/ariaec/commands.py b/ariaec/commands.py
index 5810c90..d6a310c 100644
--- a/ariaec/commands.py
+++ b/ariaec/commands.py
@@ -179,6 +179,8 @@ class AriaEcCommand:
         parser.add_argument("--ssidx", dest="ssidx", action="store_true",
                             default=False,
                             help="Use secondary structure index")
+        parser.add_argument("--prefix", dest="prefix", default="",
+                            help="File name")
         return parser
 
     def create_settings(self):
diff --git a/ariaec/commands.pyc b/ariaec/commands.pyc
index 147e2c4e6312fba904fbbfb1375c8b42188f957d..d08fd5a0a15f782f901970938d04ac47f6bafbcb 100644
GIT binary patch
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diff --git a/ariaec/maplot.py b/ariaec/maplot.py
index 2be61d1..5ca7ea7 100644
--- a/ariaec/maplot.py
+++ b/ariaec/maplot.py
@@ -36,7 +36,7 @@ class AriaEcContactMap(object):
                                             indent=4))
         # ----------------------------- Input -------------------------------- #
         self.outprefix = get_filename(self.settings.contactmap.args.get(
-            "seq", None))
+            "seq", None)) + self.settings.contactmap.args.get("prefix", "")
         # Load Sequence file
         self.protein.set_aa_sequence(self.settings.contactmap.args.get("seq", None))
         # Load secondary structure prediction file
diff --git a/ariaec/maplot.pyc b/ariaec/maplot.pyc
index 9309021709176257fae3c5271192e2a9f44936cd..13464f4d3d08ea40bcdb2c75f5d3a29295dc2a59 100644
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