diff --git a/CHANGELOG b/CHANGELOG
index 8bde8a12e94f93dd8cf9bf15ac654980d71df09f..41c863ba92dd30d7ed29b9f40199fcf8973d4fbc 100644
--- a/CHANGELOG
+++ b/CHANGELOG
@@ -1,32 +1,650 @@
-What's new in version 2.4 ?
---------------------------------
-
-    * Potential of Mean Forces for dihedral angles () and H-bonds ()
-    * Clustering step during the iterative process
-    * Extended scoring function including PMF, coulombic and full Lennard Jones functions
-    * Restraints generation from evolutionary couplings and secondary structure prediction 
-
-
-What's new in version 2.3?
-----------------------------------
-
-    * bug fixes
-    
-    * support of CCPN version 2 (instead of CCPN v1)
-    
-    * extension of symmetric oligomers support (C3, C5 and D2)
-      (in the GUI, go to "Data > Symmetry")
-    
-    * introduction of the log-harmonic potential for distance restraints (Nilges et al. Structure, 2008)
-      (go to "Structure Generation > CNS > Annealing Parameters > Log-Hamonic potential")
-    
-    * import of CCPN Models/Structure ensembles as initial structure for the minimization protocol or
-      as template structures for the initial assignment/calibration step. 
-    
-    * addition of Zinc ions coordination (through covalent bonds)
-      (go to "Add > Zinc Coordination")
-    
-    * Automated Molprobilty (clashlist) analysis
-      (go to "Analyses > Molprobity Clashlist")
-    
-    * addition of old aria1.x features (keep_structures, only fully assigned peaks)
+<a name=""></a>
+##  (2018-04-20)
+
+* Added casp rr support when there is no header (pfrmatrr) ([d9d7349](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d9d7349))
+* Added coverage report in generated ci files ([476478c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/476478c))
+* Added future to setup ([6540e57](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6540e57))
+* added logo files ([9a4d273](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9a4d273))
+* Added new prefix option for analysis command ([d00926a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d00926a))
+* Added rst contributing file ([0b807b0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0b807b0))
+* Added static files ([93c6e41](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/93c6e41))
+* Added template files ([91485ec](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/91485ec))
+* Automatic version tag in PKG_INFO ([ecf63ec](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ecf63ec))
+* Bug revision within get_version ([c9df814](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c9df814))
+* Changed aria header docstrings in rest format ([feb5e17](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/feb5e17))
+* Changed README ([69d770f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/69d770f))
+* commitlint support for git message formatting ([4d73e55](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4d73e55))
+* Corrected AriaPeak format ([f352612](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f352612))
+* Corrected coverage report parameters ([c775351](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c775351))
+* Dependencies section in installation doc ([c7a543a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c7a543a))
+* Finished installation doc ([e3af353](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e3af353))
+* Fix issue #21 ([5b93f73](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5b93f73)), closes [#21](https://gitlab.pasteur.fr/bis-aria/Ariaec/issues/21)
+* Installation doc revision, a command was missing in pip installation instructions ([26193c4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/26193c4))
+* Moved get_version again due to import errors with pip installation ([018524c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/018524c))
+* Moved get_version function ([4705325](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4705325))
+* Path revision in scientific/PDB docstring ([b7ed251](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b7ed251))
+* Previous bug revision was wrong ... ([ec2560e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ec2560e))
+* Removed old readme files ([156ee0a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/156ee0a))
+* removed reference to bootstrap theme within sphinx documentation ([e78370a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e78370a))
+* Revert "Update Dockerfile" ([b4598c3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b4598c3))
+* Revised documentation ([705ef9e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/705ef9e))
+* Solved issue within analysis command. If the native and ensemble segids didn't correspond, the viola ([5071ec0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5071ec0))
+* Update .gitlab-ci.yml ([0fd6683](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0fd6683))
+* Update .gitlab-ci.yml ([8e679df](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8e679df))
+* Update .gitlab-ci.yml ([9ddd3ba](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9ddd3ba))
+* Update .gitlab-ci.yml ([ca8c15e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ca8c15e))
+* Update .gitlab-ci.yml ([33f9575](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/33f9575))
+* Update .gitlab-ci.yml ([ef27cca](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ef27cca))
+* Update .gitlab-ci.yml ([7d37392](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/7d37392))
+* Update .gitlab-ci.yml ([6a84129](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6a84129))
+* Update CONTRIBUTING.md ([3c6b9a2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3c6b9a2))
+* Update CONTRIBUTING.md ([64f0a8a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/64f0a8a))
+* Update CONTRIBUTING.rst ([e000d1e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e000d1e))
+* Update Dockerfile ([c650124](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c650124))
+* Update Dockerfile ([da41768](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/da41768))
+* Update Dockerfile ([ae12b86](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ae12b86))
+* Update README.md ([6ee017a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6ee017a))
+* Updated API doc ([6c1b229](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6c1b229))
+* Updated configuration ([c374466](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c374466))
+* updated contributing ([7f9ccda](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/7f9ccda))
+* Updated doc ([8d44d75](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8d44d75))
+* Updated docs tree & moved examples folder ([ad95b08](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ad95b08))
+* Updated documentation content ([a249ee6](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a249ee6))
+* Updated general documentation (git guidelines) ([9ee7b2f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9ee7b2f))
+* Updated gitignore file ([476be05](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/476be05))
+* Updated installation doc ([3a18457](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3a18457))
+* Updated installation doc ([2f0f443](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/2f0f443))
+* updated logo file ([774713a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/774713a))
+* Updated README.rst and installation doc ([aa67392](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/aa67392))
+* Updated toctree & ariaec setup command within sphinx documentation ([3ee3140](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3ee3140))
+* fix: wrong installation order in dockerfile for husky npm module ([c83c314](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c83c314))
+
+
+
+<a name="0.0.17"></a>
+## <small>0.0.17 (2018-03-23)</small>
+
+* Add .gitlab-ci.yml ([ad3cfd2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ad3cfd2))
+* Add changelog ([20104b7](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/20104b7))
+* Add CONTRIBUTING file ([1b30e83](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1b30e83))
+* Add license ([7eda697](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/7eda697))
+* Add new file ([926cbc3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/926cbc3))
+* Added configuration file converter ([0db97d4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0db97d4))
+* Added empty test files ([ee28ce7](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ee28ce7))
+* Added PKG-INFO file ([95c99ce](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/95c99ce))
+* added short reminder ([e9599c1](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e9599c1))
+* Added support of ss2 psipred format ([4edb53c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4edb53c))
+* Bug revision during loading of external settings ([3441970](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3441970))
+* Bug revision in iniconv ([5087010](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5087010))
+* Bug revision with no filter option ([0ced19b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0ced19b))
+* Bug revision, wrong import in conversion ([9f391ee](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9f391ee))
+* changed entry points location ([14d82a9](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/14d82a9))
+* Changed setup.py ([8d42961](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8d42961))
+* Conkit reader now supported in conbox.reader. Close #4 ([74b5ef6](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/74b5ef6)), closes [#4](https://gitlab.pasteur.fr/bis-aria/Ariaec/issues/4)
+* ec file are now optional ([fcde165](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/fcde165))
+* gui behaviour seems ok ([956ca75](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/956ca75))
+* Ignore example files for dev ([2852dc1](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/2852dc1))
+* import revision in aria part ([43469d7](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/43469d7))
+* merging not fully functionnal ([6c3162f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6c3162f))
+* Missing dependency for ariaec in singularity recipe ([c6ef2b4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c6ef2b4))
+* path revision in aria2 script ([4c930f8](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4c930f8))
+* pkg_resources revision for cns ([78090bc](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/78090bc))
+* Put old readme file since sphinx documentation is not finished ([a8c1e63](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a8c1e63))
+* Refactored part of ariaecsettings ([48ea9d1](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/48ea9d1))
+* Refactored some parts in conbox + beginning of seqrange option ([74bee78](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/74bee78))
+* Removed annoying warnings with metadata attributes in protmap.py ([71905c3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/71905c3))
+* Singularity file added ([ea99f88](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ea99f88))
+* small syntax revision ([40e7a07](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/40e7a07))
+* small syntax revision ([62d1c7c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/62d1c7c))
+* Update .gitlab-ci.yml ([a41dbe4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a41dbe4))
+* Update .gitlab-ci.yml ([1a11d55](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1a11d55))
+* Update .gitlab-ci.yml ([f17efc6](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f17efc6))
+* Update .gitlab-ci.yml ([d46d7e8](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d46d7e8))
+* Update .gitlab-ci.yml ([904194f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/904194f))
+* Update .gitlab-ci.yml ([80cd86c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/80cd86c))
+* Update .gitlab-ci.yml ([f3636ed](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f3636ed))
+* Update .gitlab-ci.yml ([6e62d0f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6e62d0f))
+* Update .gitlab-ci.yml ([b226b94](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b226b94))
+* Update .gitlab-ci.yml ([d462e14](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d462e14))
+* Update .gitlab-ci.yml ([d416946](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d416946))
+* Update .gitlab-ci.yml ([9a39227](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9a39227))
+* Update .gitlab-ci.yml ([12b17ae](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/12b17ae))
+* Update .gitlab-ci.yml ([ec9941c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ec9941c))
+* Update .gitlab-ci.yml ([c956430](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c956430))
+* Update .gitlab-ci.yml ([cc99435](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/cc99435))
+* Update .gitlab-ci.yml ([3bbaf04](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3bbaf04))
+* Update .gitlab-ci.yml ([001eb5b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/001eb5b))
+* Update .gitlab-ci.yml ([071c954](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/071c954))
+* Update .gitlab-ci.yml ([6d775d4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6d775d4))
+* Update .gitlab-ci.yml ([fc10d09](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/fc10d09))
+* Update .gitlab-ci.yml ([b4fd0d4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b4fd0d4))
+* Update .gitlab-ci.yml ([b865530](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b865530))
+* Update .gitlab-ci.yml ([829160a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/829160a))
+* Update .gitlab-ci.yml ([d78ff48](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d78ff48))
+* Update .gitlab-ci.yml ([90be395](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/90be395))
+* Update .gitlab-ci.yml ([715ab24](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/715ab24))
+* Update .gitlab-ci.yml ([438e268](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/438e268))
+* Update .gitlab-ci.yml ([3b4b205](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3b4b205))
+* Update .gitlab-ci.yml ([00ad7f2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/00ad7f2))
+* Update .gitlab-ci.yml ([68c3209](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/68c3209))
+* Update .gitlab-ci.yml ([a8336c4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a8336c4))
+* Update .gitlab-ci.yml ([9019d4c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9019d4c))
+* Update .gitlab-ci.yml ([fedaf61](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/fedaf61))
+* Update .gitlab-ci.yml ([1e378a3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1e378a3))
+* Update .gitlab-ci.yml ([3a9e6ca](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3a9e6ca))
+* Update .gitlab-ci.yml ([0c84592](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0c84592))
+* Update .gitlab-ci.yml ([00667cc](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/00667cc))
+* Update .gitlab-ci.yml ([fb7dd46](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/fb7dd46))
+* Update .gitlab-ci.yml ([77e2689](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/77e2689))
+* Update .gitlab-ci.yml ([3e9e043](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3e9e043))
+* Update .gitlab-ci.yml ([600d96c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/600d96c))
+* Update .gitlab-ci.yml ([8d867ef](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8d867ef))
+* Update CONTRIBUTING.md ([594d24b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/594d24b))
+* Update CONTRIBUTING.md ([f1fb306](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f1fb306))
+* Update Dockerfile ([7722337](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/7722337))
+* Update Dockerfile ([19e082f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/19e082f))
+* Update Dockerfile ([6857a24](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6857a24))
+* Update Dockerfile ([0a24f4c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0a24f4c))
+* Update Dockerfile ([4498f35](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4498f35))
+* Update Dockerfile ([bea2af9](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/bea2af9))
+* Update Dockerfile ([7620522](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/7620522))
+* Update Dockerfile ([1585092](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1585092))
+* Update Dockerfile ([5263bca](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5263bca))
+* Update Dockerfile ([01f2d7a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/01f2d7a))
+* Update Dockerfile ([4dfa22f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4dfa22f))
+* Update Dockerfile ([5f8e2ba](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5f8e2ba))
+* Update Dockerfile ([ef2abb0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ef2abb0))
+* Update Dockerfile ([fbdee64](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/fbdee64))
+* Update Dockerfile ([dde69c7](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/dde69c7))
+* Update Dockerfile ([084f23a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/084f23a))
+* Update Dockerfile ([bdb46d3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/bdb46d3))
+* Update README.md ([ef36131](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ef36131))
+* Update README.md ([f5a30f6](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f5a30f6))
+* Update README.md ([2394807](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/2394807))
+* Update README.md ([c67c406](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c67c406))
+* Update README.md ([491a281](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/491a281))
+* Update README.md ([a620daf](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a620daf))
+* Update README.md ([f87b087](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f87b087))
+* Update README.md ([de2b1c4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/de2b1c4))
+* Update README.md ([bd49362](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/bd49362))
+* Update README.md ([e2b95e0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e2b95e0))
+* Update README.md ([3c4b415](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3c4b415))
+* Update README.md ([5e81779](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5e81779))
+* Update setup.py ([a4ff2ae](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a4ff2ae))
+* Update setup.py ([1e94cad](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1e94cad))
+* Updated doc ([3e4142d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3e4142d))
+* Updated DTD file ([5244de6](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5244de6))
+* Updated help inside singularity recipe ([e41ddb5](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e41ddb5))
+* updated sphinx doc (make html call) ([24585f0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/24585f0))
+* Updated sspred parser in order to support ss3 file format ([91ebaf0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/91ebaf0))
+* Updated tempate files ([76fa394](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/76fa394))
+
+
+
+<a name="0.3.1"></a>
+## <small>0.3.1 (2017-09-15)</small>
+
+* Adding example files ([21b3f0b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/21b3f0b))
+* Bug revision when giving wrong file type ([c730770](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c730770))
+* Contacts can now be selected using a percentage ([f3835df](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f3835df))
+* No filter option in maplot ([5e1e9b4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5e1e9b4))
+* Solved bug due to % syntax in n_factors ([7fde3a0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/7fde3a0))
+* syntax revision for prefix option in maplot ([36fda83](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/36fda83))
+* wrong condition in maplot when there is only reference map ([f988490](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f988490))
+
+
+
+<a name="0.3.0"></a>
+## 0.3.0 (2017-08-21)
+
+* Also update sequence section from ARIA project file ([bccbaeb](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/bccbaeb))
+* Bug revision when updating sequence field ([a009eaf](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a009eaf))
+* Bug revision: Since there is nan values instead of null when reading a scoremap, maplot no longer wo ([f551fc0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f551fc0))
+* Changed default segid ([040fe74](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/040fe74))
+
+
+
+<a name="0.2.9"></a>
+## <small>0.2.9 (2017-07-21)</small>
+
+* Added ariaproject support to extract supplementary data ([49c72d3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/49c72d3))
+* Can data from an existing aria project file ([11daeaf](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/11daeaf))
+* removed a print .... ([58314ae](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/58314ae))
+
+
+
+<a name="0.2.8"></a>
+## <small>0.2.8 (2017-07-19)</small>
+
+* Bug revision: wrong index in filtering step......... ([bde5974](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/bde5974))
+
+
+
+<a name="0.2.6"></a>
+## <small>0.2.6 (2017-07-19)</small>
+
+* Bug revision: handle missing files in previous template versions ([52ef164](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/52ef164))
+* Implementation of a new filtering step checking for unassigned contacts if amino acid information is ([2459181](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/2459181))
+
+
+
+<a name="0.2.5"></a>
+## <small>0.2.5 (2017-07-11)</small>
+
+* Bug revision: wrong call when reading seq file instead of fasta ([4cb7b31](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4cb7b31))
+* Secondary structure restraints are now optional ([e0b18b9](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e0b18b9))
+
+
+
+<a name="0.2.4"></a>
+## <small>0.2.4 (2017-07-07)</small>
+
+* Added possibility to chose distance restraint file in analysis command ([3c803b3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3c803b3))
+* aria integration update ([5dade88](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5dade88))
+* Bug revision in maplot (removed old args) ([9f09f55](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9f09f55))
+* Bug revision: wrong loop in analysis ([82cf56e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/82cf56e))
+* Changed secondary structure args in setup as optional args ([fcff1b2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/fcff1b2))
+* First attempt to change aria nested tree for setuptools installation ([912fc3b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/912fc3b))
+* Preparing for aria integration ([470859b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/470859b))
+* Updated generated files in analysis step ([c52565a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c52565a))
+* Updated installation process ([7704234](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/7704234))
+* Updated violation file in analysis step (avoid putting None values in the csv file) ([475afb9](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/475afb9))
+
+
+
+<a name="0.2.3"></a>
+## <small>0.2.3 (2017-06-01)</small>
+
+* Changed deprecated functions with panda in pdbstat part ([ceb1d13](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ceb1d13))
+* Updated violation analysis if clusters ([6c7a379](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6c7a379))
+
+
+
+<a name="0.2.2"></a>
+## <small>0.2.2 (2017-05-31)</small>
+
+* Cleaner version of setuptools installation ([ec11aa3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ec11aa3))
+
+
+
+<a name="0.2.1"></a>
+## <small>0.2.1 (2017-05-30)</small>
+
+* Add README file ([b987c0f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b987c0f))
+* Added --no-filter option in setup command ([5a60a1e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5a60a1e))
+* Added cullpdb files in package_data attribute (setup.py) ([49b450f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/49b450f))
+* Added data folder ([bca5553](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/bca5553))
+* Added docstrings in default config file ([0949374](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0949374))
+* Added ec2aria command line for backward compatibility ([89c0873](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/89c0873))
+* Added neighbor search ([38db34d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/38db34d))
+* Added new flags for restraint building. Pair_product filters atom pair list for each restraint to th ([68bd460](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/68bd460))
+* Added pdbdist cmd ([284f897](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/284f897))
+* Added plmc and plm as contact map types ([330e140](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/330e140))
+* Added project template 2.3.6 (new clustering field) ([d928bdf](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d928bdf))
+* Added scoring tag support ([c2e2196](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c2e2196))
+* Added seed for random contact selection (e.g.: with native contact) ([c685576](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c685576))
+* Added some comments for future implementations ([ce3a45d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ce3a45d))
+* Added sphinx documentation files generated with sphinx-apidoc ([3696334](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3696334))
+* Added svnignore file ([b02decd](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b02decd))
+* Added verbosity option ([ae29b7b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ae29b7b))
+* Avoid disordered atoms for the moment in pdbdist (not compatible with seen matrix index actually) ([83753ba](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/83753ba))
+* Bug revision in ResAtmMap when calling reduce method ([8c85936](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8c85936))
+* Bug revision pdbviol argparse command ([977eefd](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/977eefd))
+* Bug revision: avoid raising of matplotlib event error for contactmap tool ([814fbdc](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/814fbdc))
+* Bug revision: avoid sampling when using all contacts ([a9b93ba](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a9b93ba))
+* Bug revision: conservation score ignored if missing field ([b2b22a4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b2b22a4))
+* Bug revision: filter.out merged when there is more than one contact file... ([a36c0e2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a36c0e2))
+* Bug revision: regex for plm contacts revised ([22c7124](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/22c7124))
+* Bug revision: removed hard coded lines... ([57f42c7](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/57f42c7))
+* Bug revision: reset contribution id at each new restraint ([5db6b92](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5db6b92))
+* catch potential errors with retrieve_pdb function ([aaa1441](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/aaa1441))
+* Changed defaults options in config file ([923cf82](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/923cf82))
+* Changed delimiter in pdbdist output file ([8526fe4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8526fe4))
+* Changed filter steps in pdbdists ([1960099](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1960099))
+* Changed infra dir for setup (removed others folder) ([f9a80da](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f9a80da))
+* Contributions are now always in the same order when generating xml distance file ([e4f1d0d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e4f1d0d))
+* Create subfolders related to molecule and datas in tmp root ([0c139e8](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0c139e8))
+* Faster subdist computation in pdbdist ([161d26e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/161d26e))
+* Finalized first version of pdbviol command ([3e10b6c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3e10b6c))
+* First step to modular restraint generation ([a4d1efa](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a4d1efa))
+* First step to pdbdist based distance restraints ([bff274b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/bff274b))
+* First steps for pdbstat parallelization ([c72944d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c72944d))
+* force file format to pdb when downloading files in pdbdist section ([76b6712](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/76b6712))
+* Implemented copy method for all protein maps ([3fb57a2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3fb57a2))
+* mapreport format revision ([a1c17f2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a1c17f2))
+* Maptype checker updated -> show error msg only after 2nd line ([b0a339d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b0a339d))
+* mmCIF support in downloading process (pdbdist command) ([79b21dd](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/79b21dd))
+* Moved data folder for testing ([12ff9a2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/12ff9a2))
+* n_factor in configuration file accept 'all' as a valid parameter now ([5cef0cd](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5cef0cd))
+* New template for avg_exponent ([0207045](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0207045))
+* Parallelization process done on pdbstat (could be improved) ([8de0dde](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8de0dde))
+* PCA projection done in ensemble analysis part ([e11080d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e11080d))
+* PCA projection of clusters done ([52be20e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/52be20e))
+* Pdbdist command functionnal ([997944e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/997944e))
+* pdblist moved to pdbdist init ([632ec39](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/632ec39))
+* Pdbqual command added ([994315a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/994315a))
+* PDBStat command with GMM ([f4ccfd4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f4ccfd4))
+* Pdbstat distance type functionnal ([c6e1807](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c6e1807))
+* pdbviol analyze with ensemble of previous iteration in the same way as aria ([2d3528a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/2d3528a))
+* pep revision ([6352972](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6352972))
+* PEP8tized base, commands and econverter ([d5c35c5](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d5c35c5))
+* Redefined several commands in order to be more explicit ([a63afa9](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a63afa9))
+* Removed bin folder and moved ec2aria command into entry point ([5f394e6](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5f394e6))
+* Removed pyc files... ([6ecb9c5](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6ecb9c5))
+* Removed update of host command ([53035e9](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/53035e9))
+* Second step for parallelization of pdbstat (using pathos and tqdm) ([d2531c8](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d2531c8))
+* Second step to modular restraints ([998a96f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/998a96f))
+* Smarter RegexFile class (check if the file exists or not in package data) ([d33cbb7](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d33cbb7))
+* SsAaAtmMap implementation ([5f5715a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5f5715a))
+* Start writing pdbviol cmd ([8fcdfd6](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8fcdfd6))
+* Starting tbl2xml cmd dev ([661f02a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/661f02a))
+* tbl2xml command functionnal ([19fef77](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/19fef77))
+* Toggle on capture of warnings with dssp inside logger ([f855d81](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f855d81))
+* Update contactmap settings ([e62d90e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e62d90e))
+* Update ensemble pickling in ensemble analysis ([84f96cf](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/84f96cf))
+* Update host command for slurm log file ([f00f9e1](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f00f9e1))
+* Update host command for slurm log file (logger revision) ([664e666](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/664e666))
+* Update host command for slurm log file (logger revision) ([c51fa8e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c51fa8e))
+* Update README.md ([641978d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/641978d))
+* Updated aa conversion in pdbdist ([9f30a32](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9f30a32))
+* Updated config options in pdbstat ([567944c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/567944c))
+* Updated docstrings in converter ([12e36a2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/12e36a2))
+* Updated doctstring in contactmap section and changed naming convention for output files ([cbf6c79](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/cbf6c79))
+* Updated documentation inside aria_ec.ini file ([87d4d52](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/87d4d52))
+* Updated formatting function for setting parser (try to get absolute path if file field) ([d5b7502](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d5b7502))
+* Updated host_command modification for scheduler output ([0becc74](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0becc74))
+* Updated host_command modification for scheduler output. Only print a warning now (will lead to an er ([7765d37](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/7765d37))
+* Updated logger in pdbdist ([ced6775](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ced6775))
+* Updated logger in setup step ([1dc5e8e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1dc5e8e))
+* Updated output error file for job manager in host_command ([64eb7c5](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/64eb7c5))
+* Updated pdbdists data files and intra ss distance analysis ([65aaebe](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/65aaebe))
+* Updated protein blocks index in pdbdists command ([f2195c8](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f2195c8))
+* Updated README file ([2d3a27a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/2d3a27a))
+* Updated secondary structure index function ([4bb7202](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4bb7202))
+* Updated settings ([3531d1f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3531d1f))
+* Updated setup for pdbstat with ss information ([76d84b0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/76d84b0))
+* Updated setup for targetdistmap part 1 ([247ce2f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/247ce2f))
+* Updated setup.py file (same structure as in aria setup file) ([2d17bbd](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/2d17bbd))
+* Updated several doctypes & config file ([41e1ac0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/41e1ac0))
+* Updated some fields in violation file ([ff1880f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ff1880f))
+* Updated sphinx documentation ([68c15ad](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/68c15ad))
+* Updated sphinx documentation v2 ([5577a98](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5577a98))
+* Updated sphninx documentation ([c6f5a11](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c6f5a11))
+* Updated string formatting in mapreport ([baed6c5](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/baed6c5))
+* Using manager to share pdbdistances ([4b85864](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4b85864))
+
+
+
+<a name="0.1.12"></a>
+## <small>0.1.12 (2016-08-02)</small>
+
+* Added exponent parameter ([0fe842e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/0fe842e))
+* Added host_executable option in config file ([6897527](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6897527))
+* Added native_reliable option in config file ([b1e477c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/b1e477c))
+* Added sequence information inside contactmap report ([c942dd3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c942dd3))
+* Addign sigma mode parameter in aria project templates ([cab261f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/cab261f))
+* Bug fixe: generated ssdist restraints were empty ([a290852](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a290852))
+* Bug Fixe: N_factor convert to int during mapfilter step. Float values wasn't taken into account befo ([171a1ae](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/171a1ae))
+* Bug fixe: wrong conditionnal test when creating output directory ([02494b4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/02494b4))
+* Bug revision: dealing with empty contactlist file in maplot ([603f202](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/603f202))
+* Changed again default cutoff in contact definition section. Lower treshold fit better when using oth ([4239f50](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4239f50))
+* changed default cutoff to 8 in contactdef. We want to give the highest precision values as in CASD.. ([bdb256a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/bdb256a))
+* Error printing revision in ariaec/setup.py ([9c17de1](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9c17de1))
+* Removed working directory path in .ini file. ariaproject now generated using outdir command line arg ([f2ec107](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f2ec107))
+* Simplified temp_root path since too many contact map types give too long path (> 80 char) ([232150e](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/232150e))
+* Since cns do not like long path, project_name correspond only to molecule name now ([f9e6ef8](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f9e6ef8))
+* Since cns do not like long path, project_name correspond only to molecule name now v2 ([2bedc48](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/2bedc48))
+* syntax modifications (report file name) ([92f7149](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/92f7149))
+* Syntax update according to pylint res ([e38c758](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/e38c758))
+* Trouble with capturing and unicode syntax with python 3 compatibility... ([287cc73](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/287cc73))
+* Trouble with capturing and unicode syntax with python 3 compatibility... ([1452fe8](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1452fe8))
+* Update hbdb potential tag ([4108c51](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4108c51))
+* Updated to python 3.5 syntax ([6767d22](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6767d22))
+* Using mako library to generate dynamically iteration tag in the project template ([ea0d92d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ea0d92d))
+
+
+
+<a name="0.1.11-dev2"></a>
+## <small>0.1.11-dev2 (2016-03-11)</small>
+
+* Def_upper_bound set to 5 A ([082a369](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/082a369))
+
+
+
+<a name="0.1.11-dev1"></a>
+## <small>0.1.11-dev1 (2016-03-08)</small>
+
+* Add new section in ariaec.ini setup ([72674c8](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/72674c8))
+
+
+
+<a name="0.1.11"></a>
+## <small>0.1.11 (2016-03-02)</small>
+
+* Bug fixe: wrong atom list when pair_list set to all (add terminal atoms) ([1cf6e97](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1cf6e97))
+
+
+
+<a name="0.1.10"></a>
+## <small>0.1.10 (2016-03-01)</small>
+
+* Bug fixe: only heavy atoms when atom list set to all + upp_bound not fixed when ambig_restraint turn ([8d07798](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8d07798))
+
+
+
+<a name="0.1.9-dev3"></a>
+## <small>0.1.9-dev3 (2016-02-23)</small>
+
+* Add max_contribution in setup config ([69784cf](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/69784cf))
+* Syntax revision in generated filter.out ([fa3f608](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/fa3f608))
+
+
+
+<a name="0.1.9-dev1"></a>
+## <small>0.1.9-dev1 (2016-02-18)</small>
+
+* Reorganized/renamed output files in setup section ([5978a31](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/5978a31))
+
+
+
+<a name="0.1.9"></a>
+## <small>0.1.9 (2016-02-15)</small>
+
+* Bug Fixe: error when writing boolean values aria project file (yes/no only accepted) ([9d6b572](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9d6b572))
+* Changed aria_ec.ini default contact_def (only default treshold) ([8dc289a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8dc289a))
+* Flush before each maplot ([57556cc](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/57556cc))
+* Moving nb_c selection criteria in mapfilter object ([29f9581](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/29f9581))
+
+
+
+<a name="0.1.8-dev3"></a>
+## <small>0.1.8-dev3 (2016-02-08)</small>
+
+* Setting position filter mandatory in contactmap section (have to do the same in setup section) ([3108a9c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3108a9c))
+
+
+
+<a name="0.1.8-dev2"></a>
+## <small>0.1.8-dev2 (2016-02-05)</small>
+
+* Config filename changed in bbconv section ([3e7e1ca](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3e7e1ca))
+
+
+
+<a name="0.1.8-dev1"></a>
+## <small>0.1.8-dev1 (2016-02-04)</small>
+
+* onlyreport option ([7708a0c](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/7708a0c))
+
+
+
+<a name="0.1.8"></a>
+## <small>0.1.8 (2016-02-03)</small>
+
+* Bug fixe: error when scoremap doesn't exist for report file (contactmap section) ([8e4a6f6](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8e4a6f6))
+
+
+
+<a name="0.1.7-dev9"></a>
+## <small>0.1.7-dev9 (2016-02-03)</small>
+
+* removed ariaec/econtacts.py ([c783cfa](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c783cfa))
+* removed ariaec/econtacts.py ([c07a495](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c07a495))
+
+
+
+<a name="0.1.7-dev8"></a>
+## <small>0.1.7-dev8 (2016-02-03)</small>
+
+* pep8tized v3 ([402cdec](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/402cdec))
+
+
+
+<a name="0.1.7-dev7"></a>
+## <small>0.1.7-dev7 (2016-02-03)</small>
+
+* pep8tized v2 ([dc8fc3f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/dc8fc3f))
+
+
+
+<a name="0.1.7-dev6"></a>
+## <small>0.1.7-dev6 (2016-02-03)</small>
+
+* pep8tized ([6dba452](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/6dba452))
+
+
+
+<a name="0.1.7-dev5"></a>
+## <small>0.1.7-dev5 (2016-02-02)</small>
+
+* Bug fixe: error pdb contact list ([f57d7d4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f57d7d4))
+* Bug fixe: error pdb contact list ([db56bc6](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/db56bc6))
+* Bug Fixe: error pdb contact list ([dec91ec](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/dec91ec))
+* Bug Fixe: error reading pdb contactlist file during check_maptype step ([dbcbbe4](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/dbcbbe4))
+* Reordering metrics in report file ([f57fc58](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f57fc58))
+
+
+
+<a name="0.1.7-dev4"></a>
+## <small>0.1.7-dev4 (2016-02-02)</small>
+
+* Bug Fixe: error using pdb contact file generated from ariaec ([3c421af](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/3c421af))
+
+
+
+<a name="0.1.7-dev3"></a>
+## <small>0.1.7-dev3 (2016-01-28)</small>
+
+* Bug Fixe: remove duplicates in generated contact files ([1d26bd0](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/1d26bd0))
+
+
+
+<a name="0.1.7-dev2"></a>
+## <small>0.1.7-dev2 (2016-01-27)</small>
+
+* syntax revision precall plot ([64042ac](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/64042ac))
+
+
+
+<a name="0.1.7-dev1"></a>
+## <small>0.1.7-dev1 (2016-01-27)</small>
+
+* syntax revision for contactmap logger ([fb04f44](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/fb04f44))
+
+
+
+<a name="0.1.7"></a>
+## <small>0.1.7 (2016-01-27)</small>
+
+* Bug fixe: Missing parameter desc in pdb maps after reduce call. Report file implementation ([d57cf95](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/d57cf95))
+
+
+
+<a name="0.1.6-dev2"></a>
+## <small>0.1.6-dev2 (2016-01-22)</small>
+
+* Changed infra call;New infra functions (ariaecsettings);infra for contactmap section ([8f85025](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/8f85025))
+
+
+
+<a name="0.1.6-dev1"></a>
+## <small>0.1.6-dev1 (2016-01-21)</small>
+
+* Add new formats (metapsicov_stg1/2,pconsc1/2) ([cbd0b94](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/cbd0b94))
+
+
+
+<a name="0.1.6"></a>
+## <small>0.1.6 (2016-01-21)</small>
+
+* Bug fixe: issue when launching contactmaplot on erc cluster (Tk error) ([159556f](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/159556f))
+
+
+
+<a name="0.1.5"></a>
+## <small>0.1.5 (2016-01-21)</small>
+
+* Bug fixe: save_fig flag doesn't work with refmaplot ([f31ff4b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f31ff4b))
+* Change matplotlib to pdf output (should solve issue when x-server is disconnected) ([cff3bc2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/cff3bc2))
+* Change matplotlib to pdf output (should solve issue when x-server is disconnected) ([c5ddfa1](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/c5ddfa1))
+* Issue with using contactmap on the cluster (plt.subplot fail) ([f2ac0b3](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/f2ac0b3))
+
+
+
+<a name="0.1.4-dev1"></a>
+## <small>0.1.4-dev1 (2016-01-20)</small>
+
+* Update logger infos in contactmap section ([87fbb59](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/87fbb59))
+
+
+
+<a name="0.1.4"></a>
+## <small>0.1.4 (2016-01-20)</small>
+
+* Bug fixe: wrong arguments for contactmaplot... ([381475a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/381475a))
+
+
+
+<a name="0.1.3-dev2"></a>
+## <small>0.1.3-dev2 (2016-01-20)</small>
+
+* Version number following git tag system ([bf6fec2](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/bf6fec2))
+* Version number following git tag system ([850c70a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/850c70a))
+
+
+
+<a name="0.1.3-dev1"></a>
+## <small>0.1.3-dev1 (2016-01-19)</small>
+
+* Prefix argument (contactmap) ([22e21af](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/22e21af))
+
+
+
+<a name="0.1.3"></a>
+## <small>0.1.3 (2016-01-19)</small>
+
+* Bug fix: sc_sc contactdef ignored ([50b2839](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/50b2839))
+
+
+
+<a name="0.1.2"></a>
+## <small>0.1.2 (2016-01-18)</small>
+
+* Bug fixe: error when using only one contactfilter ([ac09277](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ac09277))
+
+
+
+<a name="0.1.1"></a>
+## <small>0.1.1 (2016-01-18)</small>
+
+* bug fixes when template or contactfilter fields are empty in ini file ([34b074a](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/34b074a))
+
+
+
+<a name="0.1.0"></a>
+## 0.1.0 (2016-01-18)
+
+* Initial commit ([35d8304](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/35d8304))
+
+
+
diff --git a/DEVELOPERS.md b/DEVELOPERS.md
index c1980a9be57cf1c733d28c63116f691cc8f78665..2541b16b69c719f1b1d17f19653007b2c4b44bfa 100644
--- a/DEVELOPERS.md
+++ b/DEVELOPERS.md
@@ -8,7 +8,7 @@
 This document describes how to set up your development environment to build, test and
 explains the basic mechanics and conventions adopted since version 0.1.
 
-## <a name="tests"> Running Tests
+## <a name="tests"></a> Running Tests
 
 ### <a name="unit-tests"></a> Running the Unit Test Suite
 
diff --git a/Dockerfile b/Dockerfile
index fea871984b6d4e83de28cbc4508789572b43592a..e90241f11af2b043299a10b4068ba435bfe685f2 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -5,9 +5,8 @@ RUN yum install -y epel-release
 RUN yum install -y python2-pip python-devel gcc make git
 RUN curl --silent --location https://rpm.nodesource.com/setup_8.x | bash -; yum -y install nodejs
 
-RUN npm install -g --save-dev @commitlint/{cli,config-conventional}
+RUN npm install -g --save-dev @commitlint/{cli,config-conventional}; npm install -g conventional-changelog-cli
 RUN echo "module.exports = {extends: ['@commitlint/config-conventional']};" > commitlint.config.js
-RUN npx yarn add husky --dev
 
 RUN pip install --upgrade pip ; pip install --upgrade setuptools; pip install sphinx; pip install numpy; pip install matplotlib; pip install coverage; pip install pytest; pip install pytest-cov
 
@@ -17,3 +16,4 @@ RUN mkdir build-aria
 ADD aria /build-aria/aria
 ADD *.py PKG-INFO /build-aria/
 RUN cd build-aria && pip install .; npm install --save-dev husky
+RUN npx yarn add husky --dev
diff --git a/package.json b/package.json
index c437718744867b3841ad045c2f4a18dafef59900..fa1c8674374092fcbd9852dc09ac9803ec97d173 100644
--- a/package.json
+++ b/package.json
@@ -1,14 +1,15 @@
 {
   "name": "ariaec",
-  "version": "1.0.0",
   "description": "===================================================== de Novo Ambiguous Restraints for Iterative Assignment =====================================================",
   "main": "index.js",
   "directories": {
     "doc": "docs"
   },
   "scripts": {
+    "precommit": "conventional-changelog -r 0 -o CHANGELOG",
     "test": "echo \"Error: no test specified\" && exit 1",
-    "commitmsg": "commitlint -e $GIT_PARAMS"
+    "commitmsg": "commitlint -e $GIT_PARAMS",
+    "changelog": "conventional-changelog -p angular -i CHANGELOG.md -s -r 0"
   },
   "repository": {
     "type": "git",
@@ -19,7 +20,8 @@
   "devDependencies": {
     "@commitlint/cli": "^6.1.3",
     "@commitlint/config-conventional": "^6.1.3",
-    "husky": "^0.14.3"
+    "husky": "^0.14.3",
+    "standard-version": "^4.3.0"
   },
   "dependencies": {}
 }