Commit 5e6cac95 authored by Fabrice  ALLAIN's avatar Fabrice ALLAIN
Browse files

doc: change installation documentation

parent d31f357b
......@@ -7,7 +7,7 @@ aria.ariacns module
.. currentmodule:: aria.ariacns
.. automodule:: aria.ariacns
:members: CNSPatchCommand, main
:members: CNSPatchCommand, CNS_PATH, main
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -29,6 +29,13 @@ Functions:
main
Data:
.. autosummary::
:nosignatures:
CNS_PATH
......
......@@ -7,7 +7,7 @@ aria.conbox.analysis module
.. currentmodule:: aria.conbox.analysis
.. automodule:: aria.conbox.analysis
:members: EnsembleAnalysis, colscatter
:members: DATA_SEQUENCE, EnsembleAnalysis, colscatter
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -29,6 +29,13 @@ Functions:
colscatter
Data:
.. autosummary::
:nosignatures:
DATA_SEQUENCE
......
......@@ -7,7 +7,7 @@ aria.conbox.commands module
.. currentmodule:: aria.conbox.commands
.. automodule:: aria.conbox.commands
:members: AriaEcCommands, CLI, ReadableDir, ReadableFile, check_file, main, seqrange_type
:members: AriaEcCommands, CLI, CONTACT_FILE_PARSERS, ReadableDir, ReadableFile, check_file, conboxdoc, main, seqrange_type
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -34,6 +34,14 @@ Functions:
main
seqrange_type
Data:
.. autosummary::
:nosignatures:
CONTACT_FILE_PARSERS
conboxdoc
......
......@@ -7,7 +7,7 @@ aria.conbox.converter module
.. currentmodule:: aria.conbox.converter
.. automodule:: aria.conbox.converter
:members: AriaEcBbConverter, AriaEcConfigConverter, AriaEcXMLConverter, AriaXMLConverter
:members: AriaEcBbConverter, AriaEcConfigConverter, AriaEcXMLConverter, AriaXMLConverter, DATA_ANNEALING_RDC, DATA_RDCS, DATA_SEQUENCE, DATA_TYPES
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -25,6 +25,16 @@ Classes:
AriaEcXMLConverter
AriaXMLConverter
Data:
.. autosummary::
:nosignatures:
DATA_ANNEALING_RDC
DATA_RDCS
DATA_SEQUENCE
DATA_TYPES
......
......@@ -7,7 +7,7 @@ aria.core.Analyser module
.. currentmodule:: aria.core.Analyser
.. automodule:: aria.core.Analyser
:members: Analyser, AnalyserXMLPickler, AnalysisParameters
:members: ALWAYS, ARIA_ENV, ARRAY, Analyser, AnalyserXMLPickler, AnalysisParameters, BOOL, CCPN_EXTENSION, DICT, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, NO, NONE, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -24,6 +24,37 @@ Classes:
AnalyserXMLPickler
AnalysisParameters
Data:
.. autosummary::
:nosignatures:
ALWAYS
ARIA_ENV
ARRAY
BOOL
CCPN_EXTENSION
DICT
FLOAT
FLOAT64
GZIP
INT
LIST
MODULE_NAME
NO
NONE
PATH_MODULES
PRINT_LOCK
PROJECT_TEMPLATE
STRING
TUPLE
TYPES
UNICODE
VL_LOW
VL_SETTINGS
VL_STANDARD
YES
......
......@@ -7,7 +7,7 @@ aria.core.AriaPeak module
.. currentmodule:: aria.core.AriaPeak
.. automodule:: aria.core.AriaPeak
:members: AbstractPeak, AriaPeak, AriaPeakAnalysis, AriaPeakAnalysisXMLPickler, AriaPeakListTextPickler, AriaPeakListTextPicklerSettings, AriaPeakTextPickler, AriaPeakXMLPickler, ContributionTextPickler, DistanceRestraint, DistanceRestraintXMLPickler, TextPickler
:members: ABBREVIATIONS_CONTRIBUTIONS, ALWAYS, ARIA_ENV, ARRAY, ASSIGNMENT_TYPE_DICT, AbstractPeak, AriaPeak, AriaPeakAnalysis, AriaPeakAnalysisXMLPickler, AriaPeakListTextPickler, AriaPeakListTextPicklerSettings, AriaPeakTextPickler, AriaPeakXMLPickler, BOOL, CCPN_EXTENSION, CONTRIBUTIONS_HEADER, CONTRIBUTION_SINGLE, CONTRIBUTION_SPINPAIR, ContributionTextPickler, DICT, DistanceRestraint, DistanceRestraintXMLPickler, FLOAT, FLOAT64, GZIP, HEADER_ABBREVIATIONS, HEADER_AMBIG, HEADER_ASSIGNMENT_TYPE, HEADER_DICT, HEADER_PROJECT, HEADER_RESTRAINT_ACTIVE, HEADER_RESTRAINT_BOUNDS, HEADER_RESTRAINT_DEFINITION, HEADER_SEQUENCE_SEPARATION, HEADER_UNAMBIG, HEADER_VIOLATIONS, INT, LIST, MODULE_NAME, NA, NO, NONE, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, TextPickler, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -33,6 +33,54 @@ Classes:
DistanceRestraintXMLPickler
TextPickler
Data:
.. autosummary::
:nosignatures:
ABBREVIATIONS_CONTRIBUTIONS
ALWAYS
ARIA_ENV
ARRAY
ASSIGNMENT_TYPE_DICT
BOOL
CCPN_EXTENSION
CONTRIBUTIONS_HEADER
CONTRIBUTION_SINGLE
CONTRIBUTION_SPINPAIR
DICT
FLOAT
FLOAT64
GZIP
HEADER_ABBREVIATIONS
HEADER_AMBIG
HEADER_ASSIGNMENT_TYPE
HEADER_DICT
HEADER_PROJECT
HEADER_RESTRAINT_ACTIVE
HEADER_RESTRAINT_BOUNDS
HEADER_RESTRAINT_DEFINITION
HEADER_SEQUENCE_SEPARATION
HEADER_UNAMBIG
HEADER_VIOLATIONS
INT
LIST
MODULE_NAME
NA
NO
NONE
PATH_MODULES
PRINT_LOCK
PROJECT_TEMPLATE
STRING
TUPLE
TYPES
UNICODE
VL_LOW
VL_SETTINGS
VL_STANDARD
YES
......
......@@ -7,7 +7,7 @@ aria.core.AriaXML module
.. currentmodule:: aria.core.AriaXML
.. automodule:: aria.core.AriaXML
:members: AriaXMLContentHandler, AriaXMLPickler, DOCManager
:members: ALWAYS, ARIA_ENV, ARRAY, AriaXMLContentHandler, AriaXMLPickler, BOOL, CCPN_EXTENSION, DICT, DOCManager, DOCTYPE_DIST_RESTRAINTS, DOCTYPE_NOE_RESTRAINTS, DTD_CHEMICAL_SHIFT_LIST, DTD_DIST_RESTRAINT, DTD_MOLECULE, DTD_NOESY_SPECTRUM, DTD_NOE_RESTRAINT, DTD_PROJECT, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, NO, NONE, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -24,6 +24,45 @@ Classes:
AriaXMLPickler
DOCManager
Data:
.. autosummary::
:nosignatures:
ALWAYS
ARIA_ENV
ARRAY
BOOL
CCPN_EXTENSION
DICT
DOCTYPE_DIST_RESTRAINTS
DOCTYPE_NOE_RESTRAINTS
DTD_CHEMICAL_SHIFT_LIST
DTD_DIST_RESTRAINT
DTD_MOLECULE
DTD_NOESY_SPECTRUM
DTD_NOE_RESTRAINT
DTD_PROJECT
FLOAT
FLOAT64
GZIP
INT
LIST
MODULE_NAME
NO
NONE
PATH_MODULES
PRINT_LOCK
PROJECT_TEMPLATE
STRING
TUPLE
TYPES
UNICODE
VL_LOW
VL_SETTINGS
VL_STANDARD
YES
......
......@@ -7,7 +7,7 @@ aria.core.Assignment module
.. currentmodule:: aria.core.Assignment
.. automodule:: aria.core.Assignment
:members: Assignment, AssignmentXMLPickler
:members: ASSIGNMENT_TYPES, ASSIGNMENT_TYPE_AUTOMATIC, ASSIGNMENT_TYPE_MANUAL, Assignment, AssignmentXMLPickler
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -23,6 +23,15 @@ Classes:
Assignment
AssignmentXMLPickler
Data:
.. autosummary::
:nosignatures:
ASSIGNMENT_TYPES
ASSIGNMENT_TYPE_AUTOMATIC
ASSIGNMENT_TYPE_MANUAL
......
......@@ -7,7 +7,7 @@ aria.core.AssignmentFilter module
.. currentmodule:: aria.core.AssignmentFilter
.. automodule:: aria.core.AssignmentFilter
:members: AssignmentFilter
:members: ALWAYS, ARIA_ENV, ARRAY, AssignmentFilter, BOOL, CCPN_EXTENSION, DICT, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, NO, NONE, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -22,6 +22,37 @@ Classes:
AssignmentFilter
Data:
.. autosummary::
:nosignatures:
ALWAYS
ARIA_ENV
ARRAY
BOOL
CCPN_EXTENSION
DICT
FLOAT
FLOAT64
GZIP
INT
LIST
MODULE_NAME
NO
NONE
PATH_MODULES
PRINT_LOCK
PROJECT_TEMPLATE
STRING
TUPLE
TYPES
UNICODE
VL_LOW
VL_SETTINGS
VL_STANDARD
YES
......
......@@ -7,7 +7,7 @@ aria.core.Atom module
.. currentmodule:: aria.core.Atom
.. automodule:: aria.core.Atom
:members: Atom, AtomSettings, AtomXMLPickler
:members: ARRAY, Atom, AtomSettings, AtomXMLPickler, BOOL, DICT, FLOAT, FLOAT64, INT, LIST, NONE, NOT_INIT, STRING, TUPLE, TYPES, UNICODE
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -24,6 +24,25 @@ Classes:
AtomSettings
AtomXMLPickler
Data:
.. autosummary::
:nosignatures:
ARRAY
BOOL
DICT
FLOAT
FLOAT64
INT
LIST
NONE
NOT_INIT
STRING
TUPLE
TYPES
UNICODE
......
......@@ -7,7 +7,7 @@ aria.core.Chain module
.. currentmodule:: aria.core.Chain
.. automodule:: aria.core.Chain
:members: AtomNomenclatureEntity, Chain, ChainSettings, ChainXMLPickler
:members: ALWAYS, ARIA_ENV, ARRAY, AtomNomenclatureEntity, BOOL, CCPN_EXTENSION, Chain, ChainSettings, ChainXMLPickler, DICT, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, NO, NONE, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, TYPE_DNA, TYPE_NONPOLYMER, TYPE_PROTEIN, TYPE_RNA, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -25,6 +25,41 @@ Classes:
ChainSettings
ChainXMLPickler
Data:
.. autosummary::
:nosignatures:
ALWAYS
ARIA_ENV
ARRAY
BOOL
CCPN_EXTENSION
DICT
FLOAT
FLOAT64
GZIP
INT
LIST
MODULE_NAME
NO
NONE
PATH_MODULES
PRINT_LOCK
PROJECT_TEMPLATE
STRING
TUPLE
TYPES
TYPE_DNA
TYPE_NONPOLYMER
TYPE_PROTEIN
TYPE_RNA
UNICODE
VL_LOW
VL_SETTINGS
VL_STANDARD
YES
......
......@@ -7,7 +7,7 @@ aria.core.ChemicalShiftFilter module
.. currentmodule:: aria.core.ChemicalShiftFilter
.. automodule:: aria.core.ChemicalShiftFilter
:members: ChemicalShiftFilter, ChemicalShiftFilterSettings
:members: ChemicalShiftFilter, ChemicalShiftFilterSettings, INVALID_SHIFT_VALUE, NEGATIVE_SHIFT_ERROR
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -23,6 +23,14 @@ Classes:
ChemicalShiftFilter
ChemicalShiftFilterSettings
Data:
.. autosummary::
:nosignatures:
INVALID_SHIFT_VALUE
NEGATIVE_SHIFT_ERROR
......
......@@ -7,7 +7,7 @@ aria.core.Cluster module
.. currentmodule:: aria.core.Cluster
.. automodule:: aria.core.Cluster
:members: Clustering, ClusteringSettings, ClusteringXMLPickler
:members: Clustering, ClusteringSettings, ClusteringXMLPickler, NO
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -24,6 +24,13 @@ Classes:
ClusteringSettings
ClusteringXMLPickler
Data:
.. autosummary::
:nosignatures:
NO
......
......@@ -7,7 +7,7 @@ aria.core.Contribution module
.. currentmodule:: aria.core.Contribution
.. automodule:: aria.core.Contribution
:members: Contribution, Contribution2XMLPickler, ContributionEvaluator, ContributionXMLPickler
:members: CONTRIBUTION_TYPE_FAST_EXCHANGE, CONTRIBUTION_TYPE_FLOATING_ASSIGNMENT, CONTRIBUTION_TYPE_NORMAL, CONTRIBUTION_TYPE_TEST, Contribution, Contribution2XMLPickler, ContributionEvaluator, ContributionXMLPickler
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -25,6 +25,16 @@ Classes:
ContributionEvaluator
ContributionXMLPickler
Data:
.. autosummary::
:nosignatures:
CONTRIBUTION_TYPE_FAST_EXCHANGE
CONTRIBUTION_TYPE_FLOATING_ASSIGNMENT
CONTRIBUTION_TYPE_NORMAL
CONTRIBUTION_TYPE_TEST
......
......@@ -7,7 +7,7 @@ aria.core.ConversionTable module
.. currentmodule:: aria.core.ConversionTable
.. automodule:: aria.core.ConversionTable
:members: AtomnameConversionError, ConversionTable
:members: AtomnameConversionError, CNS_CONVENTION, CONVERSION_DATA, ConversionTable, DYANA_CONVENTION, IUPAC_CONVENTION, NAMING_CONVENTIONS
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -29,6 +29,17 @@ Classes:
ConversionTable
Data:
.. autosummary::
:nosignatures:
CNS_CONVENTION
CONVERSION_DATA
DYANA_CONVENTION
IUPAC_CONVENTION
NAMING_CONVENTIONS
......
......@@ -7,7 +7,7 @@ aria.core.CovalentDistances module
.. currentmodule:: aria.core.CovalentDistances
.. automodule:: aria.core.CovalentDistances
:members: CovalentDistances
:members: COVALENT_DATA, CovalentDistances
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -22,6 +22,13 @@ Classes:
CovalentDistances
Data:
.. autosummary::
:nosignatures:
COVALENT_DATA
......
......@@ -7,7 +7,7 @@ aria.core.CrossPeak module
.. currentmodule:: aria.core.CrossPeak
.. automodule:: aria.core.CrossPeak
:members: CrossPeak, CrossPeakXMLPickler
:members: CROSSPEAK_ASSIGNMENT_TYPE_AUTOMATIC, CROSSPEAK_ASSIGNMENT_TYPE_MANUAL, CROSSPEAK_ASSIGNMENT_TYPE_SEMIAUTOMATIC, CrossPeak, CrossPeakXMLPickler
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -23,6 +23,15 @@ Classes:
CrossPeak
CrossPeakXMLPickler
Data:
.. autosummary::
:nosignatures:
CROSSPEAK_ASSIGNMENT_TYPE_AUTOMATIC
CROSSPEAK_ASSIGNMENT_TYPE_MANUAL
CROSSPEAK_ASSIGNMENT_TYPE_SEMIAUTOMATIC
......
......@@ -7,7 +7,7 @@ aria.core.CrossPeakFilter module
.. currentmodule:: aria.core.CrossPeakFilter
.. automodule:: aria.core.CrossPeakFilter
:members: CrossPeakFilter, CrossPeakFilterSettings
:members: CrossPeakFilter, CrossPeakFilterSettings, DIAGONAL_PEAK, NEGATIVE_PEAK, NO_PEAK_SIZE, UNASSIGNED_PEAK
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -23,6 +23,16 @@ Classes:
CrossPeakFilter
CrossPeakFilterSettings
Data:
.. autosummary::
:nosignatures:
DIAGONAL_PEAK
NEGATIVE_PEAK
NO_PEAK_SIZE
UNASSIGNED_PEAK
......
......@@ -7,7 +7,7 @@ aria.core.DataContainer module
.. currentmodule:: aria.core.DataContainer
.. automodule:: aria.core.DataContainer
:members: AmbiguousDistanceData, AmbiguousDistanceDataXMLPickler, AmbiguousParameters, AmbiguousParametersXMLPickler, AnnealingParameters, AnnealingParametersXMLPickler, BASE, BoundCorrection, BoundCorrectionXMLPickler, CCPNData, CCPNDataXMLPickler, CisProPatch, CisProPatchXMLPickler, CysPatch, CysPatchXMLPickler, DRParametersXMLPickler, DataContainer, DataContainerXMLPickler, DihedralData, DihedralDataXMLPickler, DihedralParameters, DihedralParametersXMLPickler, DistanceDataXMLPickler, ExperimentData, ExperimentDataXMLPickler, FBHWParameters, FBHWParametersXMLPickler, FFP, FileFormatXMLPickler, HBDBParameters, HBDBParametersXMLPickler, HBondData, HBondDataXMLPickler, HBondParameters, HBondParametersXMLPickler, HisPatch, HisPatchXMLPickler, InitialStructureData, InitialStructureDataXMLPickler, IsoPeptidePatch, IsoPeptidePatchXMLPickler, KarplusData, KarplusDataXMLPickler, KarplusParameters, KarplusParametersXMLPickler, LogHarmonicParameters, LogHarmonicParametersXMLPickler, LowerBoundCorrection, MDParameters, MDParametersXMLPickler, OtherData, OtherDataXMLPickler, PeakData, PeakDataXMLPickler, RDCData, RDCDataXMLPickler, RDCParameters, RDCParametersXMLPickler, RamaParameters, RamaParametersXMLPickler, SSBondData, SSBondDataXMLPickler, SSBridge, SSBridgeXMLPickler, ScoringParameters, ScoringParametersXMLPickler, SequenceData, SequenceDataXMLPickler, ShiftData, ShiftDataXMLPickler, SimpleDCXMLPickler, SimpleDataContainer, SpectrumData, SpectrumDataXMLPickler, Symmetry, SymmetryParameters, SymmetryParametersXMLPickler, SymmetryXMLPickler, TemplateData, TemplateDataXMLPickler, UnambiguousDistanceData, UnambiguousDistanceDataXMLPickler, UnambiguousParameters, UnambiguousParametersXMLPickler, UpperBoundCorrection, WaterRefinementParameters, WaterRefinementXMLPickler, ZnPatch, ZnPatchXMLPickler
:members: ALWAYS, ARIA_ENV, ARRAY, AmbiguousDistanceData, AmbiguousDistanceDataXMLPickler, AmbiguousParameters, AmbiguousParametersXMLPickler, AnnealingParameters, AnnealingParametersXMLPickler, BASE, BOOL, BoundCorrection, BoundCorrectionXMLPickler, CCPNData, CCPNDataXMLPickler, CCPN_EXTENSION, CisProPatch, CisProPatchXMLPickler, CysPatch, CysPatchXMLPickler, DATA_AMBIGUOUS, DATA_ANNEALING, DATA_ANNEALING_AMBIG, DATA_ANNEALING_DIHEDRAL, DATA_ANNEALING_FBHW, DATA_ANNEALING_HBDB, DATA_ANNEALING_HBOND, DATA_ANNEALING_KARPLUS, DATA_ANNEALING_LOGHARMONIC, DATA_ANNEALING_RAMA, DATA_ANNEALING_RDC, DATA_ANNEALING_SCORING, DATA_ANNEALING_SYM, DATA_ANNEALING_UNAMBIG, DATA_CCPN, DATA_CISPROPATCH, DATA_CYSPATCH, DATA_DEFAULT, DATA_DIHEDRALS, DATA_DYNAMICS, DATA_EXPERIMENT, DATA_HBONDS, DATA_HISPATCH, DATA_INITIAL_STRUCTURE, DATA_ISOPATCH, DATA_ITERATION, DATA_KARPLUS, DATA_OTHER, DATA_PEAKS, DATA_RDCS, DATA_SEQUENCE, DATA_SHIFTS, DATA_SPECTRUM, DATA_SSBONDS, DATA_SSBRIDGE, DATA_SYMMETRY, DATA_TEMPLATE_STRUCTURE, DATA_TYPES, DATA_UNAMBIGUOUS, DATA_ZNPATCH, DICT, DRParametersXMLPickler, DataContainer, DataContainerXMLPickler, DihedralData, DihedralDataXMLPickler, DihedralParameters, DihedralParametersXMLPickler, DistanceDataXMLPickler, ExperimentData, ExperimentDataXMLPickler, FBHWParameters, FBHWParametersXMLPickler, FFP, FLOAT, FLOAT64, FileFormatXMLPickler, GZIP, HBDBParameters, HBDBParametersXMLPickler, HBondData, HBondDataXMLPickler, HBondParameters, HBondParametersXMLPickler, HisPatch, HisPatchXMLPickler, INT, InitialStructureData, InitialStructureDataXMLPickler, IsoPeptidePatch, IsoPeptidePatchXMLPickler, KarplusData, KarplusDataXMLPickler, KarplusParameters, KarplusParametersXMLPickler, LIST, LogHarmonicParameters, LogHarmonicParametersXMLPickler, LowerBoundCorrection, MDParameters, MDParametersXMLPickler, MODULE_NAME, NO, NONE, OtherData, OtherDataXMLPickler, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, PeakData, PeakDataXMLPickler, RDCData, RDCDataXMLPickler, RDCParameters, RDCParametersXMLPickler, RamaParameters, RamaParametersXMLPickler, SSBondData, SSBondDataXMLPickler, SSBridge, SSBridgeXMLPickler, STRING, ScoringParameters, ScoringParametersXMLPickler, SequenceData, SequenceDataXMLPickler, ShiftData, ShiftDataXMLPickler, SimpleDCXMLPickler, SimpleDataContainer, SpectrumData, SpectrumDataXMLPickler, Symmetry, SymmetryParameters, SymmetryParametersXMLPickler, SymmetryXMLPickler, TUPLE, TYPES, TemplateData, TemplateDataXMLPickler, UNICODE, UnambiguousDistanceData, UnambiguousDistanceDataXMLPickler, UnambiguousParameters, UnambiguousParametersXMLPickler, UpperBoundCorrection, VL_LOW, VL_SETTINGS, VL_STANDARD, WaterRefinementParameters, WaterRefinementXMLPickler, YES, ZnPatch, ZnPatchXMLPickler
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -110,6 +110,77 @@ Classes:
ZnPatch
ZnPatchXMLPickler
Data:
.. autosummary::
:nosignatures:
ALWAYS
ARIA_ENV
ARRAY
BOOL
CCPN_EXTENSION
DATA_AMBIGUOUS
DATA_ANNEALING
DATA_ANNEALING_AMBIG
DATA_ANNEALING_DIHEDRAL
DATA_ANNEALING_FBHW
DATA_ANNEALING_HBDB
DATA_ANNEALING_HBOND
DATA_ANNEALING_KARPLUS
DATA_ANNEALING_LOGHARMONIC
DATA_ANNEALING_RAMA
DATA_ANNEALING_RDC
DATA_ANNEALING_SCORING
DATA_ANNEALING_SYM
DATA_ANNEALING_UNAMBIG
DATA_CCPN
DATA_CISPROPATCH
DATA_CYSPATCH
DATA_DEFAULT
DATA_DIHEDRALS
DATA_DYNAMICS
DATA_EXPERIMENT
DATA_HBONDS
DATA_HISPATCH
DATA_INITIAL_STRUCTURE
DATA_ISOPATCH
DATA_ITERATION
DATA_KARPLUS
DATA_OTHER