From 72674c8c54d36e3669a8685801f1a35770b6f247 Mon Sep 17 00:00:00 2001
From: fabrice <fabrice.allain@pasteur.fr>
Date: Tue, 8 Mar 2016 16:26:04 +0100
Subject: [PATCH] Add new section in ariaec.ini setup

---
 ariaec/conf/aria_ec.ini           | 8 +++++---
 ariaec/templates/aria_project.xml | 4 ++--
 2 files changed, 7 insertions(+), 5 deletions(-)

diff --git a/ariaec/conf/aria_ec.ini b/ariaec/conf/aria_ec.ini
index 113397b..0b05166 100644
--- a/ariaec/conf/aria_ec.ini
+++ b/ariaec/conf/aria_ec.ini
@@ -118,9 +118,11 @@ water_refinement_solvent:                   water
 water_refinement_n_structures:              10
 water_refinement_enabled:                   no
 water_refinement_write_solvent_molecules:   no
-procheck_executable:                        procheck
-prosa_executable:                           prosa
-whatif_executable:                          whatif
+procheck_executable:
+prosa_executable:
+whatif_executable:
+clashlist_executable:
+pickle_output:                              no
 
 [contactmap]
 ; -------------------------- Contactmap parameters --------------------------- #
diff --git a/ariaec/templates/aria_project.xml b/ariaec/templates/aria_project.xml
index 6d0906b..9ec88a1 100644
--- a/ariaec/templates/aria_project.xml
+++ b/ariaec/templates/aria_project.xml
@@ -120,12 +120,12 @@
     <procheck executable="%(procheck_executable)s" enabled="yes"/>
     <prosa executable="%(prosa_executable)s" enabled="yes"/>
     <whatif executable="%(whatif_executable)s" enabled="yes"/>
-    <clashlist executable="" enabled="no"/>
+    <clashlist executable="%(clashlist_executable)s" enabled="no"/>
   </analysis>
   <report>
     <ccpn export_assignments="no" export_noe_restraint_list="no" export_structures="no"/>
     <molmol enabled="yes"/>
-    <noe_restraint_list pickle_output="no" text_output="yes" xml_output="no"/>
+    <noe_restraint_list pickle_output="%(pickle_output)s" text_output="yes" xml_output="no"/>
     <spectra write_assigned="no" write_assigned_force="no" iteration="last" write_unambiguous_only="yes"/>
   </report>
 </project>
-- 
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