Commit 931f0fba authored by Fabrice  ALLAIN's avatar Fabrice ALLAIN
Browse files

doc: change post installation notes

parent 9b270f05
aria.aria2 module
=================
.. automodule:: aria.aria2
:members:
:undoc-members:
:show-inheritance:
:autogenerated:
aria.ariacns module
===================
.. currentmodule:: aria.ariacns
.. automodule:: aria.ariacns
:members: CNSPatchCommand, CNS_PATH, main
:undoc-members:
:show-inheritance:
:member-order: bysource
Summary
-------
Classes:
.. autosummary::
:nosignatures:
CNSPatchCommand
Functions:
.. autosummary::
:nosignatures:
main
Data:
.. autosummary::
:nosignatures:
CNS_PATH
Reference
---------
\ No newline at end of file
:members:
:undoc-members:
:show-inheritance:
aria.check module
=================
.. automodule:: aria.check
:members:
:undoc-members:
:show-inheritance:
......@@ -7,7 +7,7 @@ aria.conbox.common module
.. currentmodule:: aria.conbox.common
.. automodule:: aria.conbox.common
:members: Capturing, CommandProtocol, CustomLogging, NotDisordered, RedirectStdStreams, TqdmToLogger, addtup, cart_dist, format_dict, format_str, get_filename, parmap, ppdict, reg_load, sort_2dict, tickmin, tickrot, titleprint, worker
:members: AbcLogFilter, Capturing, CommandProtocol, CustomLogging, NotDisordered, RedirectStdStreams, TqdmToLogger, addtup, cart_dist, format_dict, format_str, get_filename, parmap, ppdict, reg_load, sort_2dict, tickmin, tickrot, titleprint, worker
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -20,6 +20,7 @@ Classes:
.. autosummary::
:nosignatures:
AbcLogFilter
Capturing
CommandProtocol
CustomLogging
......
......@@ -7,7 +7,7 @@ aria.conbox.pdbqual module
.. currentmodule:: aria.conbox.pdbqual
.. automodule:: aria.conbox.pdbqual
:members: AriaEcPdbqual
:members: AriaEcPdbqual, FILENAME_REPORT
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -22,6 +22,13 @@ Classes:
AriaEcPdbqual
Data:
.. autosummary::
:nosignatures:
FILENAME_REPORT
......
......@@ -7,7 +7,7 @@ aria.core.Analyser module
.. currentmodule:: aria.core.Analyser
.. automodule:: aria.core.Analyser
:members: ALWAYS, ARIA_ENV, ARRAY, Analyser, AnalyserXMLPickler, AnalysisParameters, BOOL, CCPN_EXTENSION, DICT, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, NO, NONE, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:members: ALWAYS, ARIA_ENV, ARRAY, Analyser, AnalyserXMLPickler, AnalysisParameters, BOOL, CCPN_EXTENSION, DICT, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, NO, NONE, ORDEREDICT, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -43,6 +43,7 @@ Data:
MODULE_NAME
NO
NONE
ORDEREDICT
PATH_MODULES
PRINT_LOCK
PROJECT_TEMPLATE
......
......@@ -7,7 +7,7 @@ aria.core.AriaPeak module
.. currentmodule:: aria.core.AriaPeak
.. automodule:: aria.core.AriaPeak
:members: ABBREVIATIONS_CONTRIBUTIONS, ALWAYS, ARIA_ENV, ARRAY, ASSIGNMENT_TYPE_DICT, AbstractPeak, AriaPeak, AriaPeakAnalysis, AriaPeakAnalysisXMLPickler, AriaPeakListTextPickler, AriaPeakListTextPicklerSettings, AriaPeakTextPickler, AriaPeakXMLPickler, BOOL, CCPN_EXTENSION, CONTRIBUTIONS_HEADER, CONTRIBUTION_SINGLE, CONTRIBUTION_SPINPAIR, ContributionTextPickler, DICT, DistanceRestraint, DistanceRestraintXMLPickler, FLOAT, FLOAT64, GZIP, HEADER_ABBREVIATIONS, HEADER_AMBIG, HEADER_ASSIGNMENT_TYPE, HEADER_DICT, HEADER_PROJECT, HEADER_RESTRAINT_ACTIVE, HEADER_RESTRAINT_BOUNDS, HEADER_RESTRAINT_DEFINITION, HEADER_SEQUENCE_SEPARATION, HEADER_UNAMBIG, HEADER_VIOLATIONS, INT, LIST, MODULE_NAME, NA, NO, NONE, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, TextPickler, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:members: ABBREVIATIONS_CONTRIBUTIONS, ALWAYS, ARIA_ENV, ARRAY, ASSIGNMENT_TYPE_DICT, AbstractPeak, AriaPeak, AriaPeakAnalysis, AriaPeakAnalysisXMLPickler, AriaPeakListTextPickler, AriaPeakListTextPicklerSettings, AriaPeakTextPickler, AriaPeakXMLPickler, BOOL, CCPN_EXTENSION, CONTRIBUTIONS_HEADER, CONTRIBUTION_SINGLE, CONTRIBUTION_SPINPAIR, ContributionTextPickler, DICT, DistanceRestraint, DistanceRestraintXMLPickler, FLOAT, FLOAT64, GZIP, HEADER_ABBREVIATIONS, HEADER_AMBIG, HEADER_ASSIGNMENT_TYPE, HEADER_DICT, HEADER_PROJECT, HEADER_RESTRAINT_ACTIVE, HEADER_RESTRAINT_BOUNDS, HEADER_RESTRAINT_DEFINITION, HEADER_SEQUENCE_SEPARATION, HEADER_UNAMBIG, HEADER_VIOLATIONS, INT, LIST, MODULE_NAME, NA, NO, NONE, ORDEREDICT, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, TextPickler, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -69,6 +69,7 @@ Data:
NA
NO
NONE
ORDEREDICT
PATH_MODULES
PRINT_LOCK
PROJECT_TEMPLATE
......
......@@ -7,7 +7,7 @@ aria.core.AriaXML module
.. currentmodule:: aria.core.AriaXML
.. automodule:: aria.core.AriaXML
:members: ALWAYS, ARIA_ENV, ARRAY, AriaXMLContentHandler, AriaXMLPickler, BOOL, CCPN_EXTENSION, DICT, DOCManager, DOCTYPE_DIST_RESTRAINTS, DOCTYPE_NOE_RESTRAINTS, DTD_CHEMICAL_SHIFT_LIST, DTD_DIST_RESTRAINT, DTD_MOLECULE, DTD_NOESY_SPECTRUM, DTD_NOE_RESTRAINT, DTD_PROJECT, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, NO, NONE, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:members: ALWAYS, ARIA_ENV, ARRAY, AriaXMLContentHandler, AriaXMLPickler, BOOL, CCPN_EXTENSION, DICT, DOCManager, DOCTYPE_DIST_RESTRAINTS, DOCTYPE_NOE_RESTRAINTS, DTD_CHEMICAL_SHIFT_LIST, DTD_DIST_RESTRAINT, DTD_MOLECULE, DTD_NOESY_SPECTRUM, DTD_NOE_RESTRAINT, DTD_PROJECT, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, NO, NONE, ORDEREDICT, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -51,6 +51,7 @@ Data:
MODULE_NAME
NO
NONE
ORDEREDICT
PATH_MODULES
PRINT_LOCK
PROJECT_TEMPLATE
......
......@@ -7,7 +7,7 @@ aria.core.AssignmentFilter module
.. currentmodule:: aria.core.AssignmentFilter
.. automodule:: aria.core.AssignmentFilter
:members: ALWAYS, ARIA_ENV, ARRAY, AssignmentFilter, BOOL, CCPN_EXTENSION, DICT, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, NO, NONE, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:members: ALWAYS, ARIA_ENV, ARRAY, AssignmentFilter, BOOL, CCPN_EXTENSION, DICT, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, NO, NONE, ORDEREDICT, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -41,6 +41,7 @@ Data:
MODULE_NAME
NO
NONE
ORDEREDICT
PATH_MODULES
PRINT_LOCK
PROJECT_TEMPLATE
......
......@@ -7,7 +7,7 @@ aria.core.Atom module
.. currentmodule:: aria.core.Atom
.. automodule:: aria.core.Atom
:members: ARRAY, Atom, AtomSettings, AtomXMLPickler, BOOL, DICT, FLOAT, FLOAT64, INT, LIST, NONE, NOT_INIT, STRING, TUPLE, TYPES, UNICODE
:members: ARRAY, Atom, AtomSettings, AtomXMLPickler, BOOL, DICT, FLOAT, FLOAT64, INT, LIST, NONE, NOT_INIT, ORDEREDICT, STRING, TUPLE, TYPES, UNICODE
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -38,6 +38,7 @@ Data:
LIST
NONE
NOT_INIT
ORDEREDICT
STRING
TUPLE
TYPES
......
......@@ -7,7 +7,7 @@ aria.core.Chain module
.. currentmodule:: aria.core.Chain
.. automodule:: aria.core.Chain
:members: ALWAYS, ARIA_ENV, ARRAY, AtomNomenclatureEntity, BOOL, CCPN_EXTENSION, Chain, ChainSettings, ChainXMLPickler, DICT, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, NO, NONE, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, TYPE_DNA, TYPE_NONPOLYMER, TYPE_PROTEIN, TYPE_RNA, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:members: ALWAYS, ARIA_ENV, ARRAY, AtomNomenclatureEntity, BOOL, CCPN_EXTENSION, Chain, ChainSettings, ChainXMLPickler, DICT, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, NO, NONE, ORDEREDICT, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, TYPE_DNA, TYPE_NONPOLYMER, TYPE_PROTEIN, TYPE_RNA, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -44,6 +44,7 @@ Data:
MODULE_NAME
NO
NONE
ORDEREDICT
PATH_MODULES
PRINT_LOCK
PROJECT_TEMPLATE
......
......@@ -7,7 +7,7 @@ aria.core.DataContainer module
.. currentmodule:: aria.core.DataContainer
.. automodule:: aria.core.DataContainer
:members: ALWAYS, ARIA_ENV, ARRAY, AmbiguousDistanceData, AmbiguousDistanceDataXMLPickler, AmbiguousParameters, AmbiguousParametersXMLPickler, AnnealingParameters, AnnealingParametersXMLPickler, BASE, BOOL, BoundCorrection, BoundCorrectionXMLPickler, CCPNData, CCPNDataXMLPickler, CCPN_EXTENSION, CisProPatch, CisProPatchXMLPickler, CysPatch, CysPatchXMLPickler, DATA_AMBIGUOUS, DATA_ANNEALING, DATA_ANNEALING_AMBIG, DATA_ANNEALING_DIHEDRAL, DATA_ANNEALING_FBHW, DATA_ANNEALING_HBDB, DATA_ANNEALING_HBOND, DATA_ANNEALING_KARPLUS, DATA_ANNEALING_LOGHARMONIC, DATA_ANNEALING_RAMA, DATA_ANNEALING_RDC, DATA_ANNEALING_SCORING, DATA_ANNEALING_SYM, DATA_ANNEALING_UNAMBIG, DATA_CCPN, DATA_CISPROPATCH, DATA_CYSPATCH, DATA_DEFAULT, DATA_DIHEDRALS, DATA_DYNAMICS, DATA_EXPERIMENT, DATA_HBONDS, DATA_HISPATCH, DATA_INITIAL_STRUCTURE, DATA_ISOPATCH, DATA_ITERATION, DATA_KARPLUS, DATA_OTHER, DATA_PEAKS, DATA_RDCS, DATA_SEQUENCE, DATA_SHIFTS, DATA_SPECTRUM, DATA_SSBONDS, DATA_SSBRIDGE, DATA_SYMMETRY, DATA_TEMPLATE_STRUCTURE, DATA_TYPES, DATA_UNAMBIGUOUS, DATA_ZNPATCH, DICT, DRParametersXMLPickler, DataContainer, DataContainerXMLPickler, DihedralData, DihedralDataXMLPickler, DihedralParameters, DihedralParametersXMLPickler, DistanceDataXMLPickler, ExperimentData, ExperimentDataXMLPickler, FBHWParameters, FBHWParametersXMLPickler, FFP, FLOAT, FLOAT64, FileFormatXMLPickler, GZIP, HBDBParameters, HBDBParametersXMLPickler, HBondData, HBondDataXMLPickler, HBondParameters, HBondParametersXMLPickler, HisPatch, HisPatchXMLPickler, INT, InitialStructureData, InitialStructureDataXMLPickler, IsoPeptidePatch, IsoPeptidePatchXMLPickler, KarplusData, KarplusDataXMLPickler, KarplusParameters, KarplusParametersXMLPickler, LIST, LogHarmonicParameters, LogHarmonicParametersXMLPickler, LowerBoundCorrection, MDParameters, MDParametersXMLPickler, MODULE_NAME, NO, NONE, OtherData, OtherDataXMLPickler, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, PeakData, PeakDataXMLPickler, RDCData, RDCDataXMLPickler, RDCParameters, RDCParametersXMLPickler, RamaParameters, RamaParametersXMLPickler, SSBondData, SSBondDataXMLPickler, SSBridge, SSBridgeXMLPickler, STRING, ScoringParameters, ScoringParametersXMLPickler, SequenceData, SequenceDataXMLPickler, ShiftData, ShiftDataXMLPickler, SimpleDCXMLPickler, SimpleDataContainer, SpectrumData, SpectrumDataXMLPickler, Symmetry, SymmetryParameters, SymmetryParametersXMLPickler, SymmetryXMLPickler, TUPLE, TYPES, TemplateData, TemplateDataXMLPickler, UNICODE, UnambiguousDistanceData, UnambiguousDistanceDataXMLPickler, UnambiguousParameters, UnambiguousParametersXMLPickler, UpperBoundCorrection, VL_LOW, VL_SETTINGS, VL_STANDARD, WaterRefinementParameters, WaterRefinementXMLPickler, YES, ZnPatch, ZnPatchXMLPickler
:members: ALWAYS, ARIA_ENV, ARRAY, AmbiguousDistanceData, AmbiguousDistanceDataXMLPickler, AmbiguousParameters, AmbiguousParametersXMLPickler, AnnealingParameters, AnnealingParametersXMLPickler, BASE, BOOL, BoundCorrection, BoundCorrectionXMLPickler, CCPNData, CCPNDataXMLPickler, CCPN_EXTENSION, CisProPatch, CisProPatchXMLPickler, CysPatch, CysPatchXMLPickler, DATA_AMBIGUOUS, DATA_ANNEALING, DATA_ANNEALING_AMBIG, DATA_ANNEALING_DIHEDRAL, DATA_ANNEALING_FBHW, DATA_ANNEALING_HBDB, DATA_ANNEALING_HBOND, DATA_ANNEALING_KARPLUS, DATA_ANNEALING_LOGHARMONIC, DATA_ANNEALING_RAMA, DATA_ANNEALING_RDC, DATA_ANNEALING_SCORING, DATA_ANNEALING_SYM, DATA_ANNEALING_UNAMBIG, DATA_CCPN, DATA_CISPROPATCH, DATA_CYSPATCH, DATA_DEFAULT, DATA_DIHEDRALS, DATA_DYNAMICS, DATA_EXPERIMENT, DATA_HBONDS, DATA_HISPATCH, DATA_INITIAL_STRUCTURE, DATA_ISOPATCH, DATA_ITERATION, DATA_KARPLUS, DATA_OTHER, DATA_PEAKS, DATA_RDCS, DATA_SEQUENCE, DATA_SHIFTS, DATA_SPECTRUM, DATA_SSBONDS, DATA_SSBRIDGE, DATA_SYMMETRY, DATA_TEMPLATE_STRUCTURE, DATA_TYPES, DATA_UNAMBIGUOUS, DATA_ZNPATCH, DICT, DRParametersXMLPickler, DataContainer, DataContainerXMLPickler, DihedralData, DihedralDataXMLPickler, DihedralParameters, DihedralParametersXMLPickler, DistanceDataXMLPickler, ExperimentData, ExperimentDataXMLPickler, FBHWParameters, FBHWParametersXMLPickler, FFP, FLOAT, FLOAT64, FileFormatXMLPickler, GZIP, HBDBParameters, HBDBParametersXMLPickler, HBondData, HBondDataXMLPickler, HBondParameters, HBondParametersXMLPickler, HisPatch, HisPatchXMLPickler, INT, InitialStructureData, InitialStructureDataXMLPickler, IsoPeptidePatch, IsoPeptidePatchXMLPickler, KarplusData, KarplusDataXMLPickler, KarplusParameters, KarplusParametersXMLPickler, LIST, LogHarmonicParameters, LogHarmonicParametersXMLPickler, LowerBoundCorrection, MDParameters, MDParametersXMLPickler, MODULE_NAME, NO, NONE, ORDEREDICT, OtherData, OtherDataXMLPickler, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, PeakData, PeakDataXMLPickler, RDCData, RDCDataXMLPickler, RDCParameters, RDCParametersXMLPickler, RamaParameters, RamaParametersXMLPickler, SSBondData, SSBondDataXMLPickler, SSBridge, SSBridgeXMLPickler, STRING, ScoringParameters, ScoringParametersXMLPickler, SequenceData, SequenceDataXMLPickler, ShiftData, ShiftDataXMLPickler, SimpleDCXMLPickler, SimpleDataContainer, SpectrumData, SpectrumDataXMLPickler, Symmetry, SymmetryParameters, SymmetryParametersXMLPickler, SymmetryXMLPickler, TUPLE, TYPES, TemplateData, TemplateDataXMLPickler, UNICODE, UnambiguousDistanceData, UnambiguousDistanceDataXMLPickler, UnambiguousParameters, UnambiguousParametersXMLPickler, UpperBoundCorrection, VL_LOW, VL_SETTINGS, VL_STANDARD, WaterRefinementParameters, WaterRefinementXMLPickler, YES, ZnPatch, ZnPatchXMLPickler
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -169,6 +169,7 @@ Data:
MODULE_NAME
NO
NONE
ORDEREDICT
PATH_MODULES
PRINT_LOCK
PROJECT_TEMPLATE
......
......@@ -7,7 +7,7 @@ aria.core.Datum module
.. currentmodule:: aria.core.Datum
.. automodule:: aria.core.Datum
:members: ALWAYS, ARIA_ENV, ARRAY, BOOL, CCPN_EXTENSION, ChemicalShift, ChemicalShiftXMLPickler, DICT, Datum, DatumXMLPickler, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, NO, NONE, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:members: ALWAYS, ARIA_ENV, ARRAY, BOOL, CCPN_EXTENSION, ChemicalShift, ChemicalShiftXMLPickler, DICT, Datum, DatumXMLPickler, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, NO, NONE, ORDEREDICT, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -44,6 +44,7 @@ Data:
MODULE_NAME
NO
NONE
ORDEREDICT
PATH_MODULES
PRINT_LOCK
PROJECT_TEMPLATE
......
......@@ -7,7 +7,7 @@ aria.core.Experiment module
.. currentmodule:: aria.core.Experiment
.. automodule:: aria.core.Experiment
:members: ALWAYS, ARIA_ENV, ARRAY, BOOL, CCPN_EXTENSION, DICT, Experiment, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, NO, NONE, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:members: ALWAYS, ARIA_ENV, ARRAY, BOOL, CCPN_EXTENSION, DICT, Experiment, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, NO, NONE, ORDEREDICT, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -41,6 +41,7 @@ Data:
MODULE_NAME
NO
NONE
ORDEREDICT
PATH_MODULES
PRINT_LOCK
PROJECT_TEMPLATE
......
......@@ -7,7 +7,7 @@ aria.core.Factory module
.. currentmodule:: aria.core.Factory
.. automodule:: aria.core.Factory
:members: ARRAY, AtomFactory, BOOL, DICT, FLOAT, FLOAT64, INT, LIST, NONE, STRING, SpinPairFactory, SpinPairListFactory, TUPLE, TYPES, UNICODE
:members: ARRAY, AtomFactory, BOOL, DICT, FLOAT, FLOAT64, INT, LIST, NONE, ORDEREDICT, STRING, SpinPairFactory, SpinPairListFactory, TUPLE, TYPES, UNICODE
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -37,6 +37,7 @@ Data:
INT
LIST
NONE
ORDEREDICT
STRING
TUPLE
TYPES
......
......@@ -7,7 +7,7 @@ aria.core.Infrastructure module
.. currentmodule:: aria.core.Infrastructure
.. automodule:: aria.core.Infrastructure
:members: ALWAYS, ARIA_ENV, ARRAY, AriaDirectoryCreationError, BOOL, CACHE_FILENAME, CCPN_EXTENSION, DICT, FLOAT, FLOAT64, GZIP, INT, Infrastructure, LIST, MODULE_NAME, NO, NONE, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:members: ALWAYS, ARIA_ENV, ARRAY, AriaDirectoryCreationError, BOOL, CACHE_FILENAME, CCPN_EXTENSION, DICT, FLOAT, FLOAT64, GZIP, INT, Infrastructure, LIST, MODULE_NAME, NO, NONE, ORDEREDICT, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -49,6 +49,7 @@ Data:
MODULE_NAME
NO
NONE
ORDEREDICT
PATH_MODULES
PRINT_LOCK
PROJECT_TEMPLATE
......
......@@ -7,7 +7,7 @@ aria.core.Iteration module
.. currentmodule:: aria.core.Iteration
.. automodule:: aria.core.Iteration
:members: ALLOW_THREADS, ALWAYS, AMBIG_REPORT, ARIA_ENV, ARRAY, BOOL, BUFSIZE, CCPN_EXTENSION, CLIP, CONSTRAINT_LIST_REPORT, DICT, ERR_CALL, ERR_DEFAULT, ERR_IGNORE, ERR_LOG, ERR_PRINT, ERR_RAISE, ERR_WARN, FLOAT, FLOAT64, FLOATING_POINT_SUPPORT, FPE_DIVIDEBYZERO, FPE_INVALID, FPE_OVERFLOW, FPE_UNDERFLOW, False_, GZIP, INT, Inf, Infinity, Iteration, IterationTextPickler, LIST, MAXDIMS, MAY_SHARE_BOUNDS, MAY_SHARE_EXACT, MODULE_NAME, NA, NAN, NINF, NO, NONE, NZERO, NaN, PATH_MODULES, PINF, PRINT_LOCK, PROJECT_TEMPLATE, PZERO, RAISE, REPORT, SHIFT_DIVIDEBYZERO, SHIFT_INVALID, SHIFT_OVERFLOW, SHIFT_UNDERFLOW, SPECTRUM_REPORT, STRING, ScalarType, TUPLE, TYPES, True_, UFUNC_BUFSIZE_DEFAULT, UFUNC_PYVALS_NAME, UNAMBIG_REPORT, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, WRAP, YES, absolute, add, arccos, arccosh, arcsin, arcsinh, arctan, arctan2, arctanh, bitwise_and, bitwise_not, bitwise_or, bitwise_xor, cbrt, ceil, conj, conjugate, copysign, cos, cosh, deg2rad, degrees, divide, divmod, e, equal, euler_gamma, exp, exp2, expm1, fabs, float_power, floor, floor_divide, fmax, fmin, fmod, frexp, gcd, greater, greater_equal, heaviside, hypot, inf, infty, invert, isfinite, isinf, isnan, isnat, lcm, ldexp, left_shift, less, less_equal, little_endian, log, log10, log1p, log2, logaddexp, logaddexp2, logical_and, logical_not, logical_or, logical_xor, matmul, maximum, minimum, mod, modf, multiply, nan, negative, newaxis, nextafter, not_equal, pi, positive, power, rad2deg, radians, reciprocal, remainder, right_shift, rint, sctypeDict, sctypes, sign, signbit, sin, sinh, spacing, sqrt, square, subtract, tan, tanh, tracemalloc_domain, true_divide, trunc, typeDict, typecodes
:members: ALLOW_THREADS, ALWAYS, AMBIG_REPORT, ARIA_ENV, ARRAY, BOOL, BUFSIZE, CCPN_EXTENSION, CLIP, CONSTRAINT_LIST_REPORT, DICT, ERR_CALL, ERR_DEFAULT, ERR_IGNORE, ERR_LOG, ERR_PRINT, ERR_RAISE, ERR_WARN, FLOAT, FLOAT64, FLOATING_POINT_SUPPORT, FPE_DIVIDEBYZERO, FPE_INVALID, FPE_OVERFLOW, FPE_UNDERFLOW, False_, GZIP, INT, Inf, Infinity, Iteration, IterationTextPickler, LIST, MAXDIMS, MAY_SHARE_BOUNDS, MAY_SHARE_EXACT, MODULE_NAME, NA, NAN, NINF, NO, NONE, NZERO, NaN, ORDEREDICT, PATH_MODULES, PINF, PRINT_LOCK, PROJECT_TEMPLATE, PZERO, RAISE, REPORT, SHIFT_DIVIDEBYZERO, SHIFT_INVALID, SHIFT_OVERFLOW, SHIFT_UNDERFLOW, SPECTRUM_REPORT, STRING, ScalarType, TUPLE, TYPES, True_, UFUNC_BUFSIZE_DEFAULT, UFUNC_PYVALS_NAME, UNAMBIG_REPORT, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, WRAP, YES, absolute, add, arccos, arccosh, arcsin, arcsinh, arctan, arctan2, arctanh, bitwise_and, bitwise_not, bitwise_or, bitwise_xor, cbrt, ceil, conj, conjugate, copysign, cos, cosh, deg2rad, degrees, divide, divmod, e, equal, euler_gamma, exp, exp2, expm1, fabs, float_power, floor, floor_divide, fmax, fmin, fmod, frexp, gcd, greater, greater_equal, heaviside, hypot, inf, infty, invert, isfinite, isinf, isnan, isnat, lcm, ldexp, left_shift, less, less_equal, little_endian, log, log10, log1p, log2, logaddexp, logaddexp2, logical_and, logical_not, logical_or, logical_xor, matmul, maximum, minimum, mod, modf, multiply, nan, negative, newaxis, nextafter, not_equal, pi, positive, power, rad2deg, radians, reciprocal, remainder, right_shift, rint, sctypeDict, sctypes, sign, signbit, sin, sinh, spacing, sqrt, square, subtract, tan, tanh, tracemalloc_domain, true_divide, trunc, typeDict, typecodes
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -70,6 +70,7 @@ Data:
NONE
NZERO
NaN
ORDEREDICT
PATH_MODULES
PINF
PRINT_LOCK
......
......@@ -7,7 +7,7 @@ aria.core.JobManager module
.. currentmodule:: aria.core.JobManager
.. automodule:: aria.core.JobManager
:members: ALWAYS, ARIA_ENV, ARRAY, BOOL, CCPN_EXTENSION, DICT, FLOAT, FLOAT64, GZIP, HostSettings, HostSettingsXMLPickler, INT, Job, JobManager, JobManagerXMLPickler, JobScheduler, JobSchedulerSettings, JobSettings, LIST, MODULE_NAME, NO, NONE, NOT_INIT, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, PartlyUsedNodesFinder, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:members: ALWAYS, ARIA_ENV, ARRAY, BOOL, CCPN_EXTENSION, DICT, FLOAT, FLOAT64, GZIP, HostSettings, HostSettingsXMLPickler, INT, Job, JobManager, JobManagerXMLPickler, JobScheduler, JobSchedulerSettings, JobSettings, LIST, MODULE_NAME, NO, NONE, NOT_INIT, ORDEREDICT, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, PartlyUsedNodesFinder, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -50,6 +50,7 @@ Data:
NO
NONE
NOT_INIT
ORDEREDICT
PATH_MODULES
PRINT_LOCK
PROJECT_TEMPLATE
......
......@@ -7,7 +7,7 @@ aria.core.Molecule module
.. currentmodule:: aria.core.Molecule
.. automodule:: aria.core.Molecule
:members: ALWAYS, ARIA_ENV, ARRAY, BOOL, CCPN_EXTENSION, DICT, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, Molecule, MoleculeXMLPickler, NO, NONE, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:members: ALWAYS, ARIA_ENV, ARRAY, BOOL, CCPN_EXTENSION, DICT, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, Molecule, MoleculeXMLPickler, NO, NONE, ORDEREDICT, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TUPLE, TYPES, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES
:undoc-members:
:show-inheritance:
:member-order: bysource
......@@ -42,6 +42,7 @@ Data:
MODULE_NAME
NO
NONE
ORDEREDICT
PATH_MODULES
PRINT_LOCK
PROJECT_TEMPLATE
......
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