Commit beb49352 authored by Fabrice Allain's avatar Fabrice Allain
Browse files

fix: add debug log message in ssclash

parent 10e33f40
......@@ -2184,7 +2184,9 @@ class MapFilter(object):
start_list = [ss_start_end[elm][0] for elm in ss_start_end]
end_list = [ss_start_end[elm][1] for elm in ss_start_end]
LOG.debug("Checking secondary structures clashes for contact list {0} "
"with secondary structure list {1}".format(str(contact_list),
str(ss_list)))
for icontact, contact in enumerate(contact_list):
# For each res-res contact
outcontact = str(hum_contact(contact))
......
......@@ -107,7 +107,7 @@ Translate contact maps as distance restraints and setup ARIA infrastructure.
+--------------------------------------------------------+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| ``-d DISTFILE``, ``--distfile DISTFILE`` | Pdb or distance matrix iif distance_type set to distfile in conf file, use distances in the given file as target distance to build distance restraints |
+--------------------------------------------------------+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| ``-s SSPRED``, ``--ssfile SSPRED`` | Secondary structure prediction file |
| ``-s SSPRED``, ``--ssfile SSPRED`` | Secondary structure prediction file. Supported formats are psipred, psipred2, psipred3, ss2 and indextableplus |
+--------------------------------------------------------+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| ``-p ARIAPROJECT``, ``--ariaproject ARIAPROJECT`` | ARIA project file. This project will be updated with data generated during the ``ariaec setup`` call |
+--------------------------------------------------------+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
......
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