Commits · 68c15add8a3f17b156c4de7b7358b12076c5e95a · bis-aria / ariaec

21 Apr, 2017 1 commit
- Updated sphinx documentation · 68c15add
  Fabrice ALLAIN authored Apr 21, 2017
  
  68c15add
20 Apr, 2017 1 commit
- Redefined several commands in order to be more explicit · a63afa91
  Fabrice ALLAIN authored Apr 20, 2017
  
  a63afa91
19 Apr, 2017 2 commits
- Updated some fields in violation file · ff1880f5
  Fabrice ALLAIN authored Apr 19, 2017
  
  ff1880f5
- pdbviol analyze with ensemble of previous iteration in the same way as aria · 2d3528a8
  Fabrice ALLAIN authored Apr 19, 2017
  
  2d3528a8
18 Apr, 2017 4 commits
- tbl2xml command functionnal · 19fef776
  Fabrice ALLAIN authored Apr 18, 2017
  
  19fef776
- mmCIF support in downloading process (pdbdist command) · 79b21dd0
  Fabrice ALLAIN authored Apr 18, 2017
  
  79b21dd0
- Updated sphninx documentation · c6f5a11c
  Fabrice ALLAIN authored Apr 18, 2017
  
  c6f5a11c
- force file format to pdb when downloading files in pdbdist section · 76b67122
  Fabrice ALLAIN authored Apr 18, 2017
  
  76b67122
13 Apr, 2017 1 commit
- Moved data folder for testing · 12ff9a26
  Fabrice ALLAIN authored Apr 13, 2017
  
  12ff9a26
11 Apr, 2017 1 commit
- Starting tbl2xml cmd dev · 661f02a9
  Fabrice ALLAIN authored Apr 11, 2017
  
  661f02a9
10 Apr, 2017 1 commit
- Finalized first version of pdbviol command · 3e10b6c2
  Fabrice ALLAIN authored Apr 10, 2017
  
  3e10b6c2
07 Apr, 2017 3 commits
- Bug revision pdbviol argparse command · 977eefd0
  Fabrice ALLAIN authored Apr 07, 2017
  
  977eefd0
- Start writing pdbviol cmd · 8fcdfd64
  Fabrice ALLAIN authored Apr 07, 2017
  
  8fcdfd64
- Updated protein blocks index in pdbdists command · f2195c8c
  Fabrice ALLAIN authored Apr 07, 2017
  
  f2195c8c
06 Apr, 2017 2 commits
- Avoid disordered atoms for the moment in pdbdist (not compatible with seen matrix index actually) · 83753ba9
  Fabrice ALLAIN authored Apr 06, 2017
  
  83753ba9
- Changed filter steps in pdbdists · 19600994
  Fabrice ALLAIN authored Apr 06, 2017
  
  19600994
05 Apr, 2017 1 commit
- Changed delimiter in pdbdist output file · 8526fe43
  Fabrice ALLAIN authored Apr 05, 2017
  
  8526fe43
04 Apr, 2017 1 commit
- Updated logger in pdbdist · ced67759
  Fabrice ALLAIN authored Apr 04, 2017
  
  ced67759
03 Apr, 2017 1 commit
- catch potential errors with retrieve_pdb function · aaa14415
  Fabrice ALLAIN authored Apr 03, 2017
  
  aaa14415
30 Mar, 2017 1 commit
- Toggle on capture of warnings with dssp inside logger · f855d819
  Fabrice ALLAIN authored Mar 30, 2017
  
  f855d819
29 Mar, 2017 1 commit
- Pdbdist command functionnal · 997944e6
  Fabrice ALLAIN authored Mar 29, 2017
  
  997944e6
28 Mar, 2017 1 commit
- Update contactmap settings · e62d90e4
  Fabrice ALLAIN authored Mar 28, 2017
  
  e62d90e4
24 Mar, 2017 4 commits
- Updated doctstring in contactmap section and changed naming convention for output files · cbf6c790
  Fabrice ALLAIN authored Mar 24, 2017
  
  cbf6c790
- Updated logger in setup step · 1dc5e8e5
  Fabrice ALLAIN authored Mar 24, 2017
  
  1dc5e8e5
- Bug revision: avoid raising of matplotlib event error for contactmap tool · 814fbdcc
  Fabrice ALLAIN authored Mar 24, 2017
  
  814fbdcc
- Added cullpdb files in package_data attribute (setup.py) · 49b450f4
  Fabrice ALLAIN authored Mar 24, 2017
  
  49b450f4
23 Mar, 2017 2 commits
- Updated aa conversion in pdbdist · 9f30a320
  Fabrice ALLAIN authored Mar 23, 2017
  
  9f30a320
- Updated documentation inside aria_ec.ini file · 87d4d52c
  Fabrice ALLAIN authored Mar 23, 2017
  
  87d4d52c
22 Mar, 2017 1 commit
- Updated secondary structure index function · 4bb7202b
  Fabrice ALLAIN authored Mar 22, 2017
  
  4bb7202b
20 Mar, 2017 1 commit
- Added neighbor search · 38db34da
  Fabrice ALLAIN authored Mar 20, 2017
  
  38db34da
16 Mar, 2017 2 commits
- pdblist moved to pdbdist init · 632ec39d
  Fabrice ALLAIN authored Mar 16, 2017
  
  632ec39d
- Smarter RegexFile class (check if the file exists or not in package data) · d33cbb72
  Fabrice ALLAIN authored Mar 16, 2017
  
  d33cbb72
15 Mar, 2017 1 commit
- Added pdbdist cmd · 284f8974
  Fabrice ALLAIN authored Mar 15, 2017
  
  284f8974
08 Mar, 2017 1 commit
- Bug revision: conservation score ignored if missing field · b2b22a4f
  Fabrice ALLAIN authored Mar 08, 2017
  
  b2b22a4f
06 Mar, 2017 1 commit
- Bug revision: reset contribution id at each new restraint · 5db6b922
  Fabrice ALLAIN authored Mar 06, 2017
  
  5db6b922
03 Mar, 2017 1 commit
- Added --no-filter option in setup command · 5a60a1e4
  Fabrice ALLAIN authored Mar 03, 2017
  
  5a60a1e4
01 Mar, 2017 4 commits
- Added verbosity option · ae29b7b0
  Fabrice ALLAIN authored Mar 01, 2017
  
  ae29b7b0
- Removed pyc files... · 6ecb9c5c
  Fabrice ALLAIN authored Mar 01, 2017
  
  6ecb9c5c
- Updated host_command modification for scheduler output. Only print a warning... · 7765d37c
  Fabrice ALLAIN authored Mar 01, 2017
```
Updated host_command modification for scheduler output. Only print a warning now (will lead to an error if we use bsub)
```
  7765d37c
- Updated host_command modification for scheduler output · 0becc743
  Fabrice ALLAIN authored Mar 01, 2017
  
  0becc743