1. 24 Feb, 2020 1 commit
  2. 27 Jan, 2020 3 commits
  3. 22 Jan, 2020 2 commits
  4. 15 Oct, 2019 3 commits
  5. 14 Oct, 2019 4 commits
  6. 04 Oct, 2019 1 commit
  7. 03 Oct, 2019 1 commit
    • Blaise Li's avatar
      Trying setup_required. · a811844d
      Blaise Li authored
      Seems to work for cython/Cython. Attempt to use it for pysam and
      pybedtools failed. Install of pybedtools from source (to use unmerged
      fork providing headers) requires cythonizing, which might be done using
      --global-option="cythonize" option. Now this needs to be checked, and
      also: how to have it done as part of automatic dependency install?
      a811844d
  8. 16 Sep, 2019 2 commits
    • Blaise Li's avatar
      Trying cleaner build. · 99a8dcd6
      Blaise Li authored
      For the moments, dependency on pybedtools and pysam has to be dealt with
      manually, using a version of pybedools that comes with *.h header files.
      Ideally, this should instead be handled via pyproject.toml.
      99a8dcd6
    • Blaise Li's avatar
      More generic install script. · be274f1b
      Blaise Li authored
      be274f1b
  9. 16 Aug, 2019 1 commit
    • Blaise Li's avatar
      Half-workaround pybedtools issue. · d6c2053e
      Blaise Li authored
      For the moment, bam25prime needs bedtools sources to be installed, in a
      specific location, and in a specific version (2.27.0).
      d6c2053e
  10. 11 Jul, 2019 3 commits
  11. 13 May, 2019 1 commit
  12. 05 Mar, 2019 1 commit
  13. 20 Dec, 2018 1 commit
    • Blaise Li's avatar
      More robust python module install. · 80e713ac
      Blaise Li authored
      Depending on pip version, `pip3.6` sometimes fail with
      "ImportError: cannot import name 'main'".
      
      Using `python3.6 -m pip` instead avoids this.
      80e713ac
  14. 09 Aug, 2018 1 commit
  15. 03 Aug, 2018 1 commit