requirements.txt 2.93 KB
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alabaster==0.7.12
appdirs==1.4.3
attrs==19.3.0
Babel==2.8.0
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git+https://bioinfo_utils:UTSWyWVPdw_kbxWR7-zD@gitlab.pasteur.fr/bli/bam25prime.git@b54d1ca837f41e1b8eaf1b7984d4799ca2cc50e4#egg=bam25prime==0.1
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beautifulsoup4==4.8.2
bs4==0.0.1
certifi==2019.11.28
cffi==1.13.2
chardet==3.0.4
ConfigArgParse==1.0
cycler==0.10.0
Cython==0.29.14
cytoolz==0.10.1
datrie==0.8
decorator==4.4.1
deepTools==3.3.2
deeptoolsintervals==0.1.9
docutils==0.16
gitdb2==2.0.6
GitPython==3.0.5
html5lib==1.0.1
husl==4.0.3
idna==2.8
imagesize==1.2.0
importlib-metadata==1.4.0
ipython-genutils==0.2.0
Jinja2==2.10.3
joblib==0.14.1
jsonschema==3.2.0
jupyter-core==4.6.1
kiwisolver==1.1.0
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git+https://bioinfo_utils:izoZHUvhFJU8689hqM5u@gitlab.pasteur.fr/bli/libcelegans.git@36938bcfd6c1e4d1b51ec39d7706fb17e08a64d4#egg=libcelegans==0.1
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git+https://bioinfo_utils:uqiFbzWyBtzxYn7br82P@gitlab.pasteur.fr/bli/libdeseq.git@c4928c62ba6875dbe83e77caceb7265a7a81045d#egg=libdeseq==0.2
git+https://bioinfo_utils:DP-sqNot8AdsMek_KJiC@gitlab.pasteur.fr/bli/libhts.git@c4715fde8bf617a87906d9349432b2beb9462a43#egg=libhts==0.2
git+https://bioinfo_utils:aCyAV57zB-zzvux9Zhox@gitlab.pasteur.fr/bli/libreads.git@aed0b24fc888752a5f75832ad33ccc7c9251a4c6#egg=libreads==0.2
git+https://bioinfo_utils:FjgTxcUGPsGVQ-yZZVyS@gitlab.pasteur.fr/bli/libsmallrna.git@89178795d9dd148b1780a490b70c705b58a64b12#egg=libsmallrna==0.2
git+https://bioinfo_utils:tfuTQsSZWMtC5xXJNFJh@gitlab.pasteur.fr/bli/libworkflows.git@4b3859c4c852c518b18d809954b60d8ce00c5d15#egg=libworkflows==0.2
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mappy==2.17
MarkupSafe==1.1.1
matplotlib==3.1.2
more-itertools==8.1.0
nbformat==5.0.4
networkx==2.4
numpy==1.18.1
numpydoc==0.9.2
packaging==20.1
pandas==0.25.3
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git+https://bioinfo_utils:EfTj-nvWDN84ZF_UzWPx@gitlab.pasteur.fr/bli/paraccumulators.git@314c8942595eb91fa243a0f66219abc5d106868e#egg=paraccumulators==0.1
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plotly==4.5.0
pluggy==0.13.1
psutil==5.6.7
py==1.8.1
py2bit==0.3.0
pybedtools==0.8.0
pyBigWig==0.3.17
pybind11==2.4.3
pycparser==2.19
Pygments==2.5.2
pyparsing==2.4.6
pyrsistent==0.15.7
pysam==0.15.4
pytest==5.3.4
python-dateutil==2.8.1
pytz==2019.3
PyYAML==5.3
-e git+https://bioinfo_utils:KU13FfM3kLyeCrWpD2ZG@gitlab.pasteur.fr/bli/qaf_demux.git@bdf4b407bbf3f8be5149e49ac4cfcc05302ab1dc#egg=qaf_demux&subdirectory=../../qaf_demux/Python
ratelimiter==1.2.0.post0
requests==2.22.0
retrying==1.3.3
rpy2==3.2.5
scikit-learn==0.22.1
scipy==1.4.1
seaborn==0.10.0
simplegeneric==0.8.1
six==1.14.0
smmap2==2.0.5
snakemake==5.10.0
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git+https://bioinfo_utils:Ues9rP1tyfzs1zs5BzpY@gitlab.pasteur.fr/bli/snakemake_wrappers.git@1e96ee88d41b9fdc7c15157d15041cbfe34fbc44#egg=snakemake-wrappers==0.3
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snowballstemmer==2.0.0
soupsieve==1.9.5
Sphinx==2.3.1
sphinxcontrib-applehelp==1.0.1
sphinxcontrib-devhelp==1.0.1
sphinxcontrib-htmlhelp==1.0.2
sphinxcontrib-jsmath==1.0.1
sphinxcontrib-qthelp==1.0.2
sphinxcontrib-serializinghtml==1.1.3
toolz==0.10.0
toposort==1.5
traitlets==4.3.3
tzlocal==2.0.0
urllib3==1.25.8
wcwidth==0.1.8
webencodings==0.5.1
wrapt==1.11.2
zipp==2.1.0