Commit 0749173d authored by Blaise Li's avatar Blaise Li
Browse files

Missing parameter in backup.

parent 96cc0300
......@@ -650,7 +650,7 @@ bam2bigwig.sh: bedGraphToBigWig failed
onsuccess:
print("iCLIP data pre-processing finished.")
cleanup_and_backup(config)
cleanup_and_backup(output_dir, config)
onerror:
print("iCLIP data pre-processing failed.")
......
......@@ -1441,7 +1441,7 @@ rule plot_meta_profile_mean:
onsuccess:
print("PRO-seq analysis finished.")
cleanup_and_backup(config)
cleanup_and_backup(output_dir, config)
onerror:
print("PRO-seq analysis failed.")
......
......@@ -1955,7 +1955,7 @@ rule make_normalized_bigwig:
params:
#orient_filter = bamcoverage_filter,
genome_binned = genome_binned,
#threads: 8 # to limit memory usage, actually
threads: 8 # to limit memory usage, actually
log:
log = OPJ(log_dir, "make_normalized_bigwig", "{lib}_{rep}_{read_type}_by_{norm}_{orientation}.log"),
err = OPJ(log_dir, "make_normalized_bigwig", "{lib}_{rep}_{read_type}_by_{norm}_{orientation}.err"),
......@@ -3857,7 +3857,7 @@ def try_to_cluster_genes(counts_data):
onsuccess:
print("small RNA-seq analysis finished.")
cleanup_and_backup(config)
cleanup_and_backup(output_dir, config)
# print("removing metadata")
# # https://stackoverflow.com/a/45614282/1878788
# rmtree(".snakemake/metadata")
......
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