diff --git a/singularity/Makefile b/singularity/Makefile index 0b6cb08e6ccd82ef2dcab930adfe5d4ed7d3f716..95ebca452b70a14fb7c6e34168381505abc76f1e 100644 --- a/singularity/Makefile +++ b/singularity/Makefile @@ -4,8 +4,9 @@ ifeq ($(PREFIX),) PREFIX := /opt/bioinfo_utils endif +all: run_pipeline -install: all +install: run_pipeline install -d $(PREFIX)_$(VERSION)/bin install run_pipeline $(PREFIX)_$(VERSION)/bin/. install run_pipeline.sh $(PREFIX)_$(VERSION)/bin/. @@ -13,9 +14,7 @@ install: all do \ ln -sf $(PREFIX)_$(VERSION)/bin/run_pipeline.sh $(PREFIX)_$(VERSION)/bin/run_$${datatype}_pipeline; \ done - ln -sf $(PREFIX)_$(VERSION) $(PREFIX) - -all: run_pipeline + ln -sfn $(PREFIX)_$(VERSION) $(PREFIX) # Should depend on the rest of the repository. run_pipeline: run_pipeline.def