From 0906153cf1f86c93af0919118779c19132bca69b Mon Sep 17 00:00:00 2001
From: Blaise Li <blaise.li__git@nsup.org>
Date: Wed, 20 Nov 2019 16:27:48 +0100
Subject: [PATCH] Fix makefile. Symbolic link update was wrong.
---
singularity/Makefile | 7 +++----
1 file changed, 3 insertions(+), 4 deletions(-)
diff --git a/singularity/Makefile b/singularity/Makefile
index 0b6cb08..95ebca4 100644
--- a/singularity/Makefile
+++ b/singularity/Makefile
@@ -4,8 +4,9 @@ ifeq ($(PREFIX),)
PREFIX := /opt/bioinfo_utils
endif
+all: run_pipeline
-install: all
+install: run_pipeline
install -d $(PREFIX)_$(VERSION)/bin
install run_pipeline $(PREFIX)_$(VERSION)/bin/.
install run_pipeline.sh $(PREFIX)_$(VERSION)/bin/.
@@ -13,9 +14,7 @@ install: all
do \
ln -sf $(PREFIX)_$(VERSION)/bin/run_pipeline.sh $(PREFIX)_$(VERSION)/bin/run_$${datatype}_pipeline; \
done
- ln -sf $(PREFIX)_$(VERSION) $(PREFIX)
-
-all: run_pipeline
+ ln -sfn $(PREFIX)_$(VERSION) $(PREFIX)
# Should depend on the rest of the repository.
run_pipeline: run_pipeline.def
--
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