diff --git a/create_metagene_profile.py b/plotting_scripts/create_metagene_profile.py
similarity index 99%
rename from create_metagene_profile.py
rename to plotting_scripts/create_metagene_profile.py
index 7b04bf570476a71ddf3c5137a4f798e50a37b6b3..795d51606ed04bb95a4c28d54fc6d7363812364e 100755
--- a/create_metagene_profile.py
+++ b/plotting_scripts/create_metagene_profile.py
@@ -5,7 +5,6 @@ This script reads bigwig files, and creates a metagene profile.
 
 The profiles can be restricted based on a list of gene identifiers.
 """
-# TODO: Set vertical scale ?
 # TODO: Set font size or graph width to avoid very large titles (also for the pipeline) ?
 
 # TODO: What about using deeptools?
@@ -196,6 +195,7 @@ def fix_none(param_value):
 DEFAULT_PARAMETERS = {
     "upstream": 0,
     "downstream": 0,
+    # TODO: change to 2000 ?
     "body": 500,
     "bin size": 10,
     "ref point": None,
diff --git a/plot_lfclfc_scatter.py b/plotting_scripts/plot_lfclfc_scatter.py
similarity index 100%
rename from plot_lfclfc_scatter.py
rename to plotting_scripts/plot_lfclfc_scatter.py