From 15d0feef01fd1d1ca0a0e4a101dcc311659d61ba Mon Sep 17 00:00:00 2001
From: Blaise Li <blaise.li__git@nsup.org>
Date: Mon, 13 May 2019 18:05:23 +0200
Subject: [PATCH] Moved plotting scripts to subdirectory.
---
.../create_metagene_profile.py | 2 +-
.../plot_lfclfc_scatter.py | 0
2 files changed, 1 insertion(+), 1 deletion(-)
rename create_metagene_profile.py => plotting_scripts/create_metagene_profile.py (99%)
rename plot_lfclfc_scatter.py => plotting_scripts/plot_lfclfc_scatter.py (100%)
diff --git a/create_metagene_profile.py b/plotting_scripts/create_metagene_profile.py
similarity index 99%
rename from create_metagene_profile.py
rename to plotting_scripts/create_metagene_profile.py
index 7b04bf5..795d516 100755
--- a/create_metagene_profile.py
+++ b/plotting_scripts/create_metagene_profile.py
@@ -5,7 +5,6 @@ This script reads bigwig files, and creates a metagene profile.
The profiles can be restricted based on a list of gene identifiers.
"""
-# TODO: Set vertical scale ?
# TODO: Set font size or graph width to avoid very large titles (also for the pipeline) ?
# TODO: What about using deeptools?
@@ -196,6 +195,7 @@ def fix_none(param_value):
DEFAULT_PARAMETERS = {
"upstream": 0,
"downstream": 0,
+ # TODO: change to 2000 ?
"body": 500,
"bin size": 10,
"ref point": None,
diff --git a/plot_lfclfc_scatter.py b/plotting_scripts/plot_lfclfc_scatter.py
similarity index 100%
rename from plot_lfclfc_scatter.py
rename to plotting_scripts/plot_lfclfc_scatter.py
--
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