From 16bed85465f5b8badcb3d48c0a5a3c15397fdadc Mon Sep 17 00:00:00 2001
From: Blaise Li <blaise.li__git@nsup.org>
Date: Thu, 12 May 2022 14:20:05 +0200
Subject: [PATCH] Trying to fix broken install command.

There was a failure to install pyseqlogo from github.

See https://stackoverflow.com/q/71504533/1878788

Maybe it would be good to try other packages to plot logos (biotite ?).
---
 singularity/run_pipeline.def | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/singularity/run_pipeline.def b/singularity/run_pipeline.def
index 74d6cf8..3815187 100644
--- a/singularity/run_pipeline.def
+++ b/singularity/run_pipeline.def
@@ -67,7 +67,8 @@ From:workflows_base.sif
 	/usr/local/bin/python -m pip install --upgrade pip
 	# installing seqlogo
 	cd /usr/local/src
-	git clone git://github.com/saketkc/pyseqlogo
+	# git clone git://github.com/saketkc/pyseqlogo
+	git clone git+https://github.com/saketkc/pyseqlogo
 	cd pyseqlogo
 	pip install -r requirements.txt
 	pip install .
-- 
GitLab