diff --git a/libworkflows b/libworkflows index a6a8d82cdea5cfb481637fb65e0441d615111b59..4b3859c4c852c518b18d809954b60d8ce00c5d15 160000 --- a/libworkflows +++ b/libworkflows @@ -1 +1 @@ -Subproject commit a6a8d82cdea5cfb481637fb65e0441d615111b59 +Subproject commit 4b3859c4c852c518b18d809954b60d8ce00c5d15 diff --git a/singularity/run_pipeline.sh b/singularity/run_pipeline.sh index 256976dabb4c75e4cf5a5f0e6632680156486dd8..7adb6edcbef9a4d6ff876575c60dae202d525e37 100755 --- a/singularity/run_pipeline.sh +++ b/singularity/run_pipeline.sh @@ -85,4 +85,4 @@ fi # -B /pasteur will mount /pasteur in the container # so that it finds the Genome configuration and gene lists # that are expected to be in a specific location there. -singularity run -B /pasteur ${container} ${PROGNAME} $@ +singularity run -B /pasteur -B /run/shm:/run/shm ${container} ${PROGNAME} $@