From 1e37c6ef6bd494753f89b6407ebdb10ba64a0b43 Mon Sep 17 00:00:00 2001
From: Blaise Li <blaise.li__git@nsup.org>
Date: Tue, 17 Dec 2019 19:21:31 +0100
Subject: [PATCH] Mounting thing necessary for multiprocessing.

Also remove niceload.
---
 libworkflows                | 2 +-
 singularity/run_pipeline.sh | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/libworkflows b/libworkflows
index a6a8d82..4b3859c 160000
--- a/libworkflows
+++ b/libworkflows
@@ -1 +1 @@
-Subproject commit a6a8d82cdea5cfb481637fb65e0441d615111b59
+Subproject commit 4b3859c4c852c518b18d809954b60d8ce00c5d15
diff --git a/singularity/run_pipeline.sh b/singularity/run_pipeline.sh
index 256976d..7adb6ed 100755
--- a/singularity/run_pipeline.sh
+++ b/singularity/run_pipeline.sh
@@ -85,4 +85,4 @@ fi
 # -B /pasteur will mount /pasteur in the container
 # so that it finds the Genome configuration and gene lists
 # that are expected to be in a specific location there.
-singularity run -B /pasteur ${container} ${PROGNAME} $@
+singularity run -B /pasteur -B /run/shm:/run/shm ${container} ${PROGNAME} $@
-- 
GitLab