From 23c1b898d8f651e3c67b4f04e4d4a94a893e5d87 Mon Sep 17 00:00:00 2001 From: Blaise Li <blaise.li__git@nsup.org> Date: Fri, 7 Feb 2020 11:19:23 +0100 Subject: [PATCH] Bypass error from bedGraphToBigWig --- singularity/workflows_base.def | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/singularity/workflows_base.def b/singularity/workflows_base.def index a5af84f..9327a88 100644 --- a/singularity/workflows_base.def +++ b/singularity/workflows_base.def @@ -94,7 +94,8 @@ From:python:3.7-buster rsync -azvP rsync://hgdownload.soe.ucsc.edu/genome/admin/exe/linux.x86_64/bedGraphToBigWig /usr/local/bin/. prog="bedGraphToBigWig" echo "# ${prog}" >> /usr/local/share/doc/program_versions.txt - eval "${prog}" 2>> /usr/local/share/doc/program_versions.txt + # `|| :` is to "ignore" error exit code from bedGraphToBigWig + eval "${prog}" 2>&1 | head -1 >> /usr/local/share/doc/program_versions.txt || : # It is possible to test whether the R install is already OK deb_source="deb http://cran.irsn.fr/bin/linux/debian buster-cran35/" echo ${deb_source} >> /etc/apt/sources.list.d/cran.list -- GitLab