Commit 2cf48265 authored by Blaise Li's avatar Blaise Li
Browse files

Merge branch 'master' of gitlab.pasteur.fr:bli/bioinfo_utils

parents bd7d9415 c8d6fc0e
bam25prime @ 04678029
Subproject commit e196dc25c2725c932974444d76ee16097488dda0 Subproject commit 0467802954cef4c07a1adfc4b9692bd9fdd6f792
libhts @ 3bf44740
Subproject commit e2deadec42e7eb8a61d083c99cc6e7a7728de5e6 Subproject commit 3bf447402ee938d825ac43b33d12bb065c88139f
...@@ -15,8 +15,8 @@ libworkflows @ git+https://bioinfo_utils:tfuTQsSZWMtC5xXJNFJh@gitlab.pasteur.fr/ ...@@ -15,8 +15,8 @@ libworkflows @ git+https://bioinfo_utils:tfuTQsSZWMtC5xXJNFJh@gitlab.pasteur.fr/
snakemake_wrappers @ git+https://bioinfo_utils:Ues9rP1tyfzs1zs5BzpY@gitlab.pasteur.fr/bli/snakemake_wrappers.git snakemake_wrappers @ git+https://bioinfo_utils:Ues9rP1tyfzs1zs5BzpY@gitlab.pasteur.fr/bli/snakemake_wrappers.git
rpy2 rpy2
# extra dependencies for the sRNA-seq annotation script small_RNA_seq_annotate.py # extra dependencies for the sRNA-seq annotation script small_RNA_seq_annotate.py
# pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize" pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
pybedtools # pybedtools
pysam pysam
paraccumulators @ git+https://bioinfo_utils:EfTj-nvWDN84ZF_UzWPx@gitlab.pasteur.fr/bli/paraccumulators.git paraccumulators @ git+https://bioinfo_utils:EfTj-nvWDN84ZF_UzWPx@gitlab.pasteur.fr/bli/paraccumulators.git
# extra dependencies for some rules # extra dependencies for some rules
......
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