From b708b9cd230800fb3b6ec54fbff8d48c76c89453 Mon Sep 17 00:00:00 2001
From: Blaise Li <blaise.li__git@nsup.org>
Date: Mon, 20 Aug 2018 17:38:30 +0200
Subject: [PATCH] More generic colour-attributing code.
---
small_RNA-seq/small_RNA-seq.snakefile | 21 ++++++++++++++++++---
1 file changed, 18 insertions(+), 3 deletions(-)
diff --git a/small_RNA-seq/small_RNA-seq.snakefile b/small_RNA-seq/small_RNA-seq.snakefile
index 960ac61..b45f3bb 100644
--- a/small_RNA-seq/small_RNA-seq.snakefile
+++ b/small_RNA-seq/small_RNA-seq.snakefile
@@ -3792,10 +3792,23 @@ def make_lib_colour_setter(colour_series_dict):
return (colour_setter, lib2colour)
-small_type_series = {"pi" : ["pi"], "mi" : ["mi"], "gene" : ["prot_sisiu", "pseu_sisiu"], "repeat" : ["te_sisiu", "satel_sisiu", "simrep_sisiu"]}
+small_type_series = {
+ "pi" : ["pi"],
+ "mi" : ["mi"],
+ "gene" : ["prot_sisiu", "pseu_sisiu"],
+ "repeat" : ["te_sisiu", "satel_sisiu", "simrep_sisiu"]}
+
+
def make_small_type_colour_setter(small_type_series):
- base_colours = sns.color_palette("colorblind", 4)
- series2base_colour = {"pi" : base_colours[0], "mi" : base_colours[1], "gene" : base_colours[2], "repeat" : base_colours[3]}
+ base_colours = sns.color_palette("colorblind", len(small_type_series))
+ # series2base_colour = {
+ # "pi" : base_colours[0],
+ # "mi" : base_colours[1],
+ # "gene" : base_colours[2],
+ # "repeat" : base_colours[3]}
+ series2base_colour = {
+ key : base_colours[i]
+ for (i, key) in enumerate(small_type_series.keys())}
small_type2colour = {}
for (type_series, small_types) in small_type_series.items():
nb_colours = len(small_types)
@@ -3816,6 +3829,8 @@ def make_small_type_colour_setter(small_type_series):
(small_type_colour_setter, small_type2colour) = make_small_type_colour_setter(small_type_series)
+
+
(lib_colour_setter, lib2colour) = make_lib_colour_setter(genotype_series)
#def make_sample_plotter(axis, libs=LIBS, treats=TREATS):
def make_sample_plotter(axis):
--
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