From d55ce31629c71a997e4299ef12d219d3aec3e35c Mon Sep 17 00:00:00 2001 From: Blaise Li <blaise.li__git@nsup.org> Date: Mon, 18 Nov 2019 17:17:14 +0100 Subject: [PATCH] Added symlink to install step. --- singularity/Makefile | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) diff --git a/singularity/Makefile b/singularity/Makefile index 58d42b0..0b6cb08 100644 --- a/singularity/Makefile +++ b/singularity/Makefile @@ -1,18 +1,19 @@ VERSION := $(shell git log | head -1 | cut -d " " -f2) ifeq ($(PREFIX),) - PREFIX := /opt/bioinfo_utils_$(VERSION) + PREFIX := /opt/bioinfo_utils endif install: all - install -d $(PREFIX)/bin - install run_pipeline $(PREFIX)/bin/. - install run_pipeline.sh $(PREFIX)/bin/. + install -d $(PREFIX)_$(VERSION)/bin + install run_pipeline $(PREFIX)_$(VERSION)/bin/. + install run_pipeline.sh $(PREFIX)_$(VERSION)/bin/. for datatype in sRNA-seq smallRNA-seq RNA-seq GRO-seq PRO-seq Degradome-seq Ribo-seq iCLIP-seq iCLIP; \ do \ - ln -s $(PREFIX)/bin/run_pipeline.sh $(PREFIX)/bin/run_$${datatype}_pipeline; \ + ln -sf $(PREFIX)_$(VERSION)/bin/run_pipeline.sh $(PREFIX)_$(VERSION)/bin/run_$${datatype}_pipeline; \ done + ln -sf $(PREFIX)_$(VERSION) $(PREFIX) all: run_pipeline -- GitLab