From e1ee877942052f6130200b0aa66a3199a0456043 Mon Sep 17 00:00:00 2001
From: Blaise Li <blaise.li__git@nsup.org>
Date: Fri, 22 Feb 2019 15:09:33 +0100
Subject: [PATCH] Trying to fix plot labels.
---
PRO-seq/PRO-seq.snakefile | 12 ++++++------
small_RNA-seq/small_RNA-seq.snakefile | 2 +-
2 files changed, 7 insertions(+), 7 deletions(-)
diff --git a/PRO-seq/PRO-seq.snakefile b/PRO-seq/PRO-seq.snakefile
index c1d5030..da3d2f7 100644
--- a/PRO-seq/PRO-seq.snakefile
+++ b/PRO-seq/PRO-seq.snakefile
@@ -1312,16 +1312,16 @@ rule make_MA_plot:
else:
grouping = params.id_list
group2colour = (wildcards.id_list, sns.xkcd_rgb["orange"])
+ title = f"MA-plot for {wildcards.contrast}, {wildcards.orientation}_{wildcards.biotype}"
+ if mpl.rcParams.get("text.usetex", False):
+ title = texscape(title)
save_plot(
output.MA_plot, plot_MA, res,
grouping=grouping,
group2colour=group2colour,
- lfc_range = params.lfc_range,
- fold_type = "log2FoldChange",
- title="MA-plot for %s, %s_%s" % (
- wildcards.contrast,
- wildcards.orientation,
- wildcards.biotype))
+ lfc_range=params.lfc_range,
+ fold_type="log2FoldChange",
+ title=title)
##################
diff --git a/small_RNA-seq/small_RNA-seq.snakefile b/small_RNA-seq/small_RNA-seq.snakefile
index e532bf4..067ca56 100644
--- a/small_RNA-seq/small_RNA-seq.snakefile
+++ b/small_RNA-seq/small_RNA-seq.snakefile
@@ -4164,7 +4164,7 @@ def plot_logo(data, ylabel):
letter2legend = dict(zip("ACGTN", "ACGTN"))
usetex = mpl.rcParams.get("text.usetex", False)
if usetex:
- ylabel = sub("_", r"\_", ylabel)
+ ylabel = texscape(ylabel)
for (read_len, rel_heights) in data.mul(information, axis=0).iterrows():
y_base = 0
for (letter, rel_height) in rel_heights.sort_values().iteritems():
--
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