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Commit e35654a5 authored by Blaise Li's avatar Blaise Li
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Using pep518-aware pybedtools.

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bam25prime @ 861a59e4
Subproject commit 0ec6a30646ddb06a6ff0bb91314515f029415985
Subproject commit 861a59e43a3525723376d2830398c80d19f5d031
libhts @ c4715fde
Subproject commit fbbe4ad34d94a039b7fdb01f32877c6d5d66512a
Subproject commit c4715fde8bf617a87906d9349432b2beb9462a43
small_RNA-seq/requirements.txt
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......@@ -16,7 +16,7 @@ snakemake_wrappers @ git+https://bioinfo_utils:Ues9rP1tyfzs1zs5BzpY@gitlab.paste
rpy2
# extra dependencies for the sRNA-seq annotation script small_RNA_seq_annotate.py
# pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
pybedtools @ git+https://github.com/blaiseli/pybedtools.git@auto_cythonize
pybedtools @ git+https://github.com/blaiseli/pybedtools.git@pep518
# pybedtools
pysam
paraccumulators @ git+https://bioinfo_utils:EfTj-nvWDN84ZF_UzWPx@gitlab.pasteur.fr/bli/paraccumulators.git
......
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