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Blaise LI
bioinfo_utils
Commits
e35654a5
Commit
e35654a5
authored
Jan 27, 2020
by
Blaise Li
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Using pep518-aware pybedtools.
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small_RNA-seq/requirements.txt
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e35654a5
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@@ -16,7 +16,7 @@ snakemake_wrappers @ git+https://bioinfo_utils:Ues9rP1tyfzs1zs5BzpY@gitlab.paste
rpy2
# extra dependencies for the sRNA-seq annotation script small_RNA_seq_annotate.py
# pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
pybedtools @ git+https://github.com/blaiseli/pybedtools.git@
auto_cythonize
pybedtools @ git+https://github.com/blaiseli/pybedtools.git@
pep518
# pybedtools
pysam
paraccumulators @ git+https://bioinfo_utils:EfTj-nvWDN84ZF_UzWPx@gitlab.pasteur.fr/bli/paraccumulators.git
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